CmoCh16G010160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr16: 7017995 .. 7020356 (+)
RNA-Seq Expression	CmoCh16G010160
Synteny	CmoCh16G010160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTCTTCCTCAGCCGTAGTCTAAAACCAAAACTCCTTTTGAAATACAAACCTCACTCTTCCAAACCAAATCCAAATCCAAAGTCCGTTCAAAACACTCCGATCCTCCGTCTTCCGTCTTCCTTCTTCCTCTGAATCGCTAATTCGCAACTACTGTAACCAAGATCCGGCCGGCGAAGCCACGATGTGCTGCTTCGGAAAGGTGTGCATGCTGTGCACGTGCCTGATTCTGGTGGTCGTGGCCGTCGGATTCCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCACAAGATTAAAGATAAGGCCGATTTCTGCGACGGAGGTATCTGCGGCAGTGGCGGCGGCGGCGGAAGGCCTTTCTTCGCTGCTCCGCCTCCTCGTTTCTAGGTTTTCTCCTCTTCTGTGGATCTTCGTTTCGATTTTTTTATTATTTATTTATTTTTTTTAATTTAGGGATATTATGTGCTGCTGCATATCATTCTCGTAATCGTCTTGTTTAAATTACGGTTTACACGATTTTTACTTCTTTTCTACGATAAATACTGGTTTAAATAAAATTATTGAAAAATAGGTTTTAGGACGAGATTGATTTGAAGATTTATTTATTTATTTTTTTTATTATAGGATGCAAATAATTTTTTTAAAATGTTTTGTGTTGGGAGTTTACTCTTGAACTCATACTACGAGTGGTCACTTGTGTTTTCATTATAGCTATATTGCAAACAGTATTTTTCATATTATAGTTTATATATATATTATAATTAATGAATATTATAGTTATTTATTTATAACCAAATAAATTAAAAGGATAGGAAAGATAAATAAAAAGTAAAAATATACCTAAGGTAAAAAAATACATATATATTTGCTCTATAATATAATATATATATATAGTAAACTATAATATATTATTAAATATTCTTAAAAAGAAAAATAATCTGAAATTTATAAAAAGAAATAAAGTAATATACTCGTATCTAAGAAATTTTCTTAATATTCTCCCGTTGCATCATAAAAATGAACTCTTCAAAAATAATAAATTAGAAATGACATAATAAAAAATAATAAATTAAAAATGACCCAATGACTCGAAACTTACTTTAAAAAAATATATAAAATTAAGATGCATCAGAGTGAAAAAGTCTATATTTGAAAATTTGAAATTATGAAAATATTGACTAATTGATAATTTGATTTTATAAATTCAGGATTAATATGTCCATTTACACTGAATCTCTAATATAGTAATGTGTGGTTGGGTTAATAACACTAGTGCTTTTATGGTTAAGTAAACTTTGGAAAAAATCCAGATGAGATATTTCTCACATATAATGTGAAATTATAGAATCTAATAAATGGTACGTTAGTAGGCATTTTATTGGTTAAGCATACTTATATTCCATGAAACATTGAAAGATAAAAAATTTGTTAAATATTTAATAAAATTAAGGAACTTACGGTTCAAAGTCTAAAATGAATTATTTAGGCTAATTATAAATATAAACTTATTAATTTCTAGAATACTCAATAATTGGACTACAAGGTGGCCGATCATTTTGTATTAATTAGATTTTTAACCCCGTAATCCTCAAAATCATTTAAAGTCATTTTGTTTTAATTGGATTTTTATCCTCGTAACATGGATCTAAGGTTGAATTGGATTTTGAGGAGTAGATTCAGACTAGTATCAAGAATAATTAGTAACTCGAGCCTTGTTCAATTAAATGGCTCCACTGTCGATTCGACATAATTATTTTATGTAGGATGACACGTGCCTAGTGTTCCCTGCATGTGTCATATGTGTGATATGTGATCAAGTTTAATGTGTTAGGAAAGAATGGAGGTTATCTTGCATCATTTTATTATGTCGTGATGGAAAGTATGAGGATCTCATGCATAACTGTGTGTTCATGTGTATCGGGATACTTCCCTCGTTATGTTAAATTAGTATCGATGCGTACTTTCGATATTTATGTTCGTCATGATATCATGTGGTCCTTTACCTCCTGGTGACCAACGATGCGTTAACATGTTTAACACGACTAAACCAGACCTTGGGGTACGTATACAAGCCCACATGGTGGGTCAATGTGCAGGTATAGGCCATGTGTGAGGAGTACCACACATCCAACCCTGCCCGGATTGGAAAGAGCTAAGGCCATACTATTCTATTTTAAATGATAAGTCTCACCATGTTGTATGTGTTTGTGTTTCACGTCCCCAATATTGGAGTCACTTAAGAAATACTCTTACATTTTAGGTAAAGGCAAGACACCTCTATACGAATGATGGAGGTAATGCGTGAAGACCATGGAACCGGTGTTAGGGTAGTTGCATTTCATGTTATACTCTTAGGTTAGAG

mRNA sequence

ACGTCTTCCTCAGCCGTAGTCTAAAACCAAAACTCCTTTTGAAATACAAACCTCACTCTTCCAAACCAAATCCAAATCCAAAGTCCGTTCAAAACACTCCGATCCTCCGTCTTCCGTCTTCCTTCTTCCTCTGAATCGCTAATTCGCAACTACTGTAACCAAGATCCGGCCGGCGAAGCCACGATGTGCTGCTTCGGAAAGGTGTGCATGCTGTGCACGTGCCTGATTCTGGTGGTCGTGGCCGTCGGATTCCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCACAAGATTAAAGATAAGGCCGATTTCTGCGACGGAGGTATCTGCGGCAGTGGCGGCGGCGGCGGAAGGCCTTTCTTCGCTGCTCCGCCTCCTCGTTTCTAGGTAAAGGCAAGACACCTCTATACGAATGATGGAGGTAATGCGTGAAGACCATGGAACCGGTGTTAGGGTAGTTGCATTTCATGTTATACTCTTAGGTTAGAG

Coding sequence (CDS)

ATGTGCTGCTTCGGAAAGGTGTGCATGCTGTGCACGTGCCTGATTCTGGTGGTCGTGGCCGTCGGATTCCTCTTCGGATTCGGAGTTTTCAAAGACGGATTTCACAAGATTAAAGATAAGGCCGATTTCTGCGACGGAGGTATCTGCGGCAGTGGCGGCGGCGGCGGAAGGCCTTTCTTCGCTGCTCCGCCTCCTCGTTTCTAG

Protein sequence

MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFFAAPPPRF

Homology

[Close]

BLAST of CmoCh16G010160 vs. ExPASy TrEMBL
Match: A0A6J1EWB7 (uncharacterized protein LOC111438773 OS=Cucurbita moschata OX=3662 GN=LOC111438773 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60
          MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60

Query: 61 AAPPPRF 68
          AAPPPRF
Sbjct: 61 AAPPPRF 67

[Close]

BLAST of CmoCh16G010160 vs. ExPASy TrEMBL
Match: A0A1S3BL26 (uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 5.2e-25
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60
          MCCFGK+CMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG+C    GGGRPFF
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLC----GGGRPFF 60

Query: 61 AAPPPRF 68
           APPPRF
Sbjct: 61 PAPPPRF 63

[Close]

BLAST of CmoCh16G010160 vs. ExPASy TrEMBL
Match: A0A0A0L2S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60
          MCC GKVCMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG CG GG G   F 
Sbjct: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGS--FS 60

Query: 61 AAPPP 66
           APPP
Sbjct: 61 PAPPP 63

[Close]

BLAST of CmoCh16G010160 vs. ExPASy TrEMBL
Match: A0A6A4P7D7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048788 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.7e-18
Identity = 49/68 (72.06%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60
          MCC GKVCMLC CLILVV+ +G LFGFGVFK GFHKIKD   +CD   CG GGGGGRPF 
Sbjct: 1  MCCPGKVCMLCICLILVVITIGMLFGFGVFKHGFHKIKDTVSYCD--YCGGGGGGGRPFL 60

Query: 61 A-APPPRF 68
            APPP F
Sbjct: 61 GYAPPPLF 66

[Close]

BLAST of CmoCh16G010160 vs. ExPASy TrEMBL
Match: A0A1S2XMC8 (uncharacterized protein LOC101495402 OS=Cicer arietinum OX=3827 GN=LOC101495402 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60
          MCC GK+CMLCTCL+LVV+ +GF+FGFGVFK GFHK+KD   +CD   CG GG GGRPFF
Sbjct: 1  MCCGGKICMLCTCLVLVVIVIGFMFGFGVFKHGFHKLKDTVSYCDS--CG-GGSGGRPFF 60

Query: 61 A-APPPRF 68
            APPP F
Sbjct: 61 GYAPPPLF 65

[Close]

BLAST of CmoCh16G010160 vs. NCBI nr
Match: XP_022932418.1 (uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932419.1 uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932420.1 uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932421.1 uncharacterized protein LOC111438773 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 5.9e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60
          MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60

Query: 61 AAPPPRF 68
          AAPPPRF
Sbjct: 61 AAPPPRF 67

[Close]

BLAST of CmoCh16G010160 vs. NCBI nr
Match: KAG7015596.1 (hypothetical protein SDJN02_23232, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.7 bits (348), Expect = 1.9e-29
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGS--GGGGGRP 60
          MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGS  GGGGGRP
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGGGRP 60

Query: 61 FFAAPPPRF 68
          FFAAPPPRF
Sbjct: 61 FFAAPPPRF 69

[Close]

BLAST of CmoCh16G010160 vs. NCBI nr
Match: XP_038905566.1 (uncharacterized protein Os04g0629400 [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 5.2e-27
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGIC---GSGGGGGR 60
          MCCFGKVCMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK D+CDGG+C   G GGGGGR
Sbjct: 1  MCCFGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDYCDGGLCGGGGGGGGGGR 60

Query: 61 PFFAAPPPRF 68
          PFFAAPPPRF
Sbjct: 61 PFFAAPPPRF 70

[Close]

BLAST of CmoCh16G010160 vs. NCBI nr
Match: XP_023553402.1 (uncharacterized protein LOC111810828 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.3 bits (316), Expect = 9.7e-26
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60
          MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGIC    GGGRPFF
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGIC----GGGRPFF 60

Query: 61 -AAPPPRF 68
           AAPPPRF
Sbjct: 61 AAAPPPRF 64

[Close]

BLAST of CmoCh16G010160 vs. NCBI nr
Match: XP_008449006.1 (PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60
          MCCFGK+CMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG+C    GGGRPFF
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLC----GGGRPFF 60

Query: 61 AAPPPRF 68
           APPPRF
Sbjct: 61 PAPPPRF 63

[Close]

BLAST of CmoCh16G010160 vs. TAIR 10
Match: AT3G13275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-14
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADF-CDGGICGSGGGGGRPF 60
          MCC G++CMLCTCL+LVV+A+GFLFGFGVFKDGFHKI +     CD    G GGG GR  
Sbjct: 1  MCC-GRICMLCTCLLLVVIAIGFLFGFGVFKDGFHKIHESIHLECDPRF-GCGGGLGRRG 60

Query: 61 FAAPPP 66
          +  P P
Sbjct: 61 YGFPAP 64

The following BLAST results are available for this feature:

BLAST of CmoCh16G010160 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G010160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWB7	2.9e-31	100.00	uncharacterized protein LOC111438773 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A1S3BL26	5.2e-25	85.07	uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=...	[more]
A0A0A0L2S1	1.7e-20	81.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1	[more]
A0A6A4P7D7	4.7e-18	72.06	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048788 PE=4 SV=1	[more]
A0A1S2XMC8	3.1e-17	69.12	uncharacterized protein LOC101495402 OS=Cicer arietinum OX=3827 GN=LOC101495402 ...	[more]

BLAST of CmoCh16G010160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932418.1	5.9e-31	100.00	uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932419.1 unchar...	[more]
KAG7015596.1	1.9e-29	97.10	hypothetical protein SDJN02_23232, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038905566.1	5.2e-27	87.14	uncharacterized protein Os04g0629400 [Benincasa hispida]	[more]
XP_023553402.1	9.7e-26	92.65	uncharacterized protein LOC111810828 [Cucurbita pepo subsp. pepo]	[more]
XP_008449006.1	1.1e-24	85.07	PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo]	[more]

BLAST of CmoCh16G010160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13275.1	2.4e-14	62.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36753	TRANSMEMBRANE PROTEIN	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010160.1	CmoCh16G010160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane