CmoCh16G010040 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010040
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein TIC 20
Location	Cmo_Chr16: 6907505 .. 6908167 (-)
RNA-Seq Expression	CmoCh16G010040
Synteny	CmoCh16G010040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGCTTATCTTAAATCTCTCCCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCGCCATTTCCCTCTCTCTCAAACCCTAGAACTACAGCAGCAACAACAACCCTCACTAACCAAATCAATTTCACCACTCTACGACGACGGCGACGACGACGCATCCTCACCGTCCGATCCTCCGGCGACCGCGACAACAACACCGCCGACGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCGTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACGCTCCCTTTCAGGTTCTGATTCAGCCCTTGGTTCCCGCGATTCGAGTTTTCAAGAGCTTTCCATTCAACGGATTTCTGGTGTTTTTGACTCTATACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGATATGTTAGGTTCAATATTATGCAAGCCATTGTTCTTGATGTGCTTTTGATTTTCCCCGATCTTCTGGAGAGGAGCTTCAATCCGAGAGGGGGATTGGGGTTGGATTTGGTGATGAGCTTGGATAGCACTGTGTTTCTGTTTCTTTTGATTTGTTTGATTTATGGGTCATCTTCTTGCTTGTTGGGGCAGGTCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGTGA

mRNA sequence

ATGGCGACGCTTATCTTAAATCTCTCCCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCGCCATTTCCCTCTCTCTCAAACCCTAGAACTACAGCAGCAACAACAACCCTCACTAACCAAATCAATTTCACCACTCTACGACGACGGCGACGACGACGCATCCTCACCGTCCGATCCTCCGGCGACCGCGACAACAACACCGCCGACGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCGTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACGCTCCCTTTCAGGTTCTGATTCAGCCCTTGGTTCCCGCGATTCGAGTTTTCAAGAGCTTTCCATTCAACGGATTTCTGGTGTTTTTGACTCTATACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGATATGTTAGGTTCAATATTATGCAAGCCATTGTTCTTGATGTGCTTTTGATTTTCCCCGATCTTCTGGAGAGGAGCTTCAATCCGAGAGGGGGATTGGGGTTGGATTTGGTGATGAGCTTGGATAGCACTGTGTTTCTGTTTCTTTTGATTTGTTTGATTTATGGGTCATCTTCTTGCTTGTTGGGGCAGGTCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGTGA

Coding sequence (CDS)

ATGGCGACGCTTATCTTAAATCTCTCCCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCGCCATTTCCCTCTCTCTCAAACCCTAGAACTACAGCAGCAACAACAACCCTCACTAACCAAATCAATTTCACCACTCTACGACGACGGCGACGACGACGCATCCTCACCGTCCGATCCTCCGGCGACCGCGACAACAACACCGCCGACGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCGTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACGCTCCCTTTCAGGTTCTGATTCAGCCCTTGGTTCCCGCGATTCGAGTTTTCAAGAGCTTTCCATTCAACGGATTTCTGGTGTTTTTGACTCTATACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGATATGTTAGGTTCAATATTATGCAAGCCATTGTTCTTGATGTGCTTTTGATTTTCCCCGATCTTCTGGAGAGGAGCTTCAATCCGAGAGGGGGATTGGGGTTGGATTTGGTGATGAGCTTGGATAGCACTGTGTTTCTGTTTCTTTTGATTTGTTTGATTTATGGGTCATCTTCTTGCTTGTTGGGGCAGGTCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGTGA

Protein sequence

MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM

Homology

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BLAST of CmoCh16G010040 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-69
Identity = 142/209 (67.94%), Postives = 165/209 (78.95%), Query Frame = 0


Query: 15  SSFFPSPFPSLSNPRTTAATTTLTNQIN--FTTLR-RRRRRRILTVRSSGDRDNNTADGP 74
           S FF +P PSL+   T    + L   ++  F   R  R R   L ++S GD   ++ D  
Sbjct: 5   SQFF-APLPSLTGTLTLTGRSFLPLNLDTQFPKPRLSRDRAATLVLQSKGD---DSVDAS 64

Query: 75  DRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYF 134
           DR+ISA+CYFYPFFDG+QYGK++ITQY PFQ+LIQPL PAIR FKSFPFNGFL+F+TLYF
Sbjct: 65  DRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITLYF 124

Query: 135 VVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLI 194
           VVVRNPNFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVFLFLL+
Sbjct: 125 VVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVFLFLLV 184

Query: 195 CLIYGSSSCLLGQVPRLPIVADAADRQVM 221
            LIYG S+CL G  PRLP+VA+AADRQV+
Sbjct: 185 SLIYGFSACLFGLTPRLPLVAEAADRQVL 209

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BLAST of CmoCh16G010040 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 6.9e-31
Identity = 80/197 (40.61%), Postives = 112/197 (56.85%), Query Frame = 0


Query: 25  LSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPF 84
           LS PR    + +      F+     RR   LT R+S           +R+IS   Y  PF
Sbjct: 16  LSAPRCRPLSLSFPGSSTFSIRPSSRRATALTTRAS----YTPTPATERVISIASYALPF 75

Query: 85  FDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVR 144
           F+ +QYG+++  QY    +L +P+ P + +++S P+  F+ F  LY  VVRN +FSRYVR
Sbjct: 76  FNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGLYLGVVRNTSFSRYVR 135

Query: 145 FNIMQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLL 204
           FN MQA+ LDVLL  P LL R  +P   GG G+  +M   + VF+F  +C +YG  S LL
Sbjct: 136 FNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLL 195

Query: 205 GQVPRLPIVADAADRQV 220
           G+ P +P VADAA RQ+
Sbjct: 196 GKTPYIPFVADAAGRQL 208

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BLAST of CmoCh16G010040 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-22
Identity = 57/156 (36.54%), Postives = 92/156 (58.97%), Query Frame = 0


Query: 65  NNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFL 124
           N+TADG DR  SA+ Y  P  D   +G +++ Q+   Q++  P++P ++ +  FPF  F+
Sbjct: 4   NSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASFI 63

Query: 125 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLL-IFPDLLERSFNPRGGLGLDLVMSLDS 184
           +F+ L+  VVRN N S ++RFN MQAI++ +LL +F  ++     P  G GL +  +L +
Sbjct: 64  IFIVLFMAVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGL-VTETLYN 123

Query: 185 TVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQV 220
             FL  L C  +G    +LG+   +P ++DAA  QV
Sbjct: 124 FAFLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

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BLAST of CmoCh16G010040 vs. ExPASy Swiss-Prot
Match: O19916 (Tic20 family protein Ycf60 OS=Cyanidium caldarium OX=2771 GN=ycf60 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-06
Identity = 42/149 (28.19%), Postives = 76/149 (51.01%), Query Frame = 0


Query: 73  RLISAICYFYPFFDGV-QYGKYVITQYAPFQVLIQPLVPAIRV-FKSFPFNGFLVFLTLY 132
           R IS + YF P  +G+ Q+G   I  ++  +++ +  +  I V +   P  GF +F+TLY
Sbjct: 53  RAISCLIYFLPLLEGIAQFGIVCIDDHSWIRIIYKNTLAYIVVPYLESPLIGFCIFITLY 112

Query: 133 FVVVRN-PNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFL 192
            + VR     S++++F+I+QA++L +L      +  S     G    +   L  T+ L  
Sbjct: 113 LIFVRGIIQISKFIKFHIVQALLLYLLDSVIGTVLTSLPLEIGYSF-IGDRLADTLLLIT 172

Query: 193 LICLIYGSSSCLLGQVPRLPIVADAADRQ 219
            +  IY  +  L GQ   +P++++AA  Q
Sbjct: 173 FMISIYAGTDALKGQYSNIPLISEAAKMQ 200

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BLAST of CmoCh16G010040 vs. ExPASy TrEMBL
Match: A0A6J1EW92 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111438760 PE=3 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.6e-115
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS 60
           MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS
Sbjct: 23  MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS 82

Query: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120
           GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF
Sbjct: 83  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 142

Query: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180
           NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS
Sbjct: 143 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 202

Query: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM
Sbjct: 203 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 242

[Close]

BLAST of CmoCh16G010040 vs. ExPASy TrEMBL
Match: A0A6J1HN42 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111465112 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 9.8e-113
Identity = 218/220 (99.09%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS 60
           MATLILNLSPKTL SSFFPSPFPSLSNPRTT ATTTLTNQINFTTLRRRRRRRILTVRSS
Sbjct: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTT-ATTTLTNQINFTTLRRRRRRRILTVRSS 60

Query: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120
           GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF
Sbjct: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120

Query: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180
           NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS
Sbjct: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180

Query: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM
Sbjct: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 219

[Close]

BLAST of CmoCh16G010040 vs. ExPASy TrEMBL
Match: A0A5D3CPD4 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00160 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 195/223 (87.44%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRR---RRRILTV 60
           MA LILNLSPKTLHSSFFPSPFP+LSNP+TT         +NFTT  RRR   RRRI TV
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTT--------LNFTTTLRRRGRGRRRIFTV 60

Query: 61  RSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 120
           RS+GD +NN+ADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 61  RSTGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120

Query: 121 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDL
Sbjct: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDL 180

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]

BLAST of CmoCh16G010040 vs. ExPASy TrEMBL
Match: A0A1S3BM16 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103491027 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 195/223 (87.44%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRR---RRRILTV 60
           MA LILNLSPKTLHSSFFPSPFP+LSNP+TT         +NFTT  RRR   RRRI TV
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTT--------LNFTTTLRRRGRGRRRIFTV 60

Query: 61  RSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 120
           RS+GD +NN+ADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 61  RSTGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120

Query: 121 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDL
Sbjct: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDL 180

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]

BLAST of CmoCh16G010040 vs. ExPASy TrEMBL
Match: A0A0A0L632 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_3G047830 PE=3 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 6.2e-91
Identity = 189/224 (84.38%), Postives = 195/224 (87.05%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRR---RRRILTV 60
           MA LILNLSPKT HS F    FPSLSNP+TT         +NFTT   RR   R RILTV
Sbjct: 1   MAFLILNLSPKTPHSPF----FPSLSNPKTTT--------LNFTTTLPRRWLARPRILTV 60

Query: 61  RSSG-DRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFK 120
           RS+G D +NN+AD PDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFK
Sbjct: 61  RSTGDDNNNNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFK 120

Query: 121 SFPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLD 180
           SFP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLD
Sbjct: 121 SFPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLD 180

Query: 181 LVMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           LVMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 LVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 212

[Close]

BLAST of CmoCh16G010040 vs. NCBI nr
Match: XP_022932396.1 (protein TIC 20-v, chloroplastic [Cucurbita moschata])

HSP 1 Score: 425.2 bits (1092), Expect = 3.3e-115
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS 60
           MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS
Sbjct: 23  MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS 82

Query: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120
           GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF
Sbjct: 83  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 142

Query: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180
           NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS
Sbjct: 143 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 202

Query: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM
Sbjct: 203 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 242

[Close]

BLAST of CmoCh16G010040 vs. NCBI nr
Match: KAG6577521.1 (Protein TIC 20-v, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015580.1 Protein TIC 20-v, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 419.5 bits (1077), Expect = 1.8e-113
Identity = 217/220 (98.64%), Postives = 217/220 (98.64%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS 60
           MA LILNLSPKTLHSSFFPSPFPSL NPRTTA TTTLTNQINFTTLRRRRRRRILTVRSS
Sbjct: 1   MAKLILNLSPKTLHSSFFPSPFPSLPNPRTTATTTTLTNQINFTTLRRRRRRRILTVRSS 60

Query: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120
           GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF
Sbjct: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120

Query: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180
           NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS
Sbjct: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180

Query: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM
Sbjct: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 220

[Close]

BLAST of CmoCh16G010040 vs. NCBI nr
Match: XP_023553383.1 (protein TIC 20-v, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 419.1 bits (1076), Expect = 2.4e-113
Identity = 219/220 (99.55%), Postives = 219/220 (99.55%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS 60
           MATLILNLSPKTLHSSFFPSPFPSLSNPRTT ATTTLTNQINFTTLRRRRRRRILTVRSS
Sbjct: 22  MATLILNLSPKTLHSSFFPSPFPSLSNPRTT-ATTTLTNQINFTTLRRRRRRRILTVRSS 81

Query: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120
           GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF
Sbjct: 82  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 141

Query: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180
           NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS
Sbjct: 142 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 201

Query: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM
Sbjct: 202 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 240

[Close]

BLAST of CmoCh16G010040 vs. NCBI nr
Match: XP_022965178.1 (protein TIC 20-v, chloroplastic [Cucurbita maxima])

HSP 1 Score: 416.0 bits (1068), Expect = 2.0e-112
Identity = 218/220 (99.09%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSS 60
           MATLILNLSPKTL SSFFPSPFPSLSNPRTT ATTTLTNQINFTTLRRRRRRRILTVRSS
Sbjct: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTT-ATTTLTNQINFTTLRRRRRRRILTVRSS 60

Query: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120
           GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF
Sbjct: 61  GDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPF 120

Query: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180
           NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS
Sbjct: 121 NGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMS 180

Query: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM
Sbjct: 181 LDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 219

[Close]

BLAST of CmoCh16G010040 vs. NCBI nr
Match: XP_008449034.1 (PREDICTED: protein TIC 20-v, chloroplastic [Cucumis melo] >KAA0065731.1 protein TIC 20-v [Cucumis melo var. makuwa] >TYK13757.1 protein TIC 20-v [Cucumis melo var. makuwa])

HSP 1 Score: 371.7 bits (953), Expect = 4.4e-99
Identity = 195/223 (87.44%), Postives = 203/223 (91.03%), Query Frame = 0


Query: 1   MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRR---RRRILTV 60
           MA LILNLSPKTLHSSFFPSPFP+LSNP+TT         +NFTT  RRR   RRRI TV
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTT--------LNFTTTLRRRGRGRRRIFTV 60

Query: 61  RSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 120
           RS+GD +NN+ADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 61  RSTGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120

Query: 121 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDL
Sbjct: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDL 180

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 221
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]

BLAST of CmoCh16G010040 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 264.2 bits (674), Expect = 9.1e-71
Identity = 142/209 (67.94%), Postives = 165/209 (78.95%), Query Frame = 0


Query: 15  SSFFPSPFPSLSNPRTTAATTTLTNQIN--FTTLR-RRRRRRILTVRSSGDRDNNTADGP 74
           S FF +P PSL+   T    + L   ++  F   R  R R   L ++S GD   ++ D  
Sbjct: 5   SQFF-APLPSLTGTLTLTGRSFLPLNLDTQFPKPRLSRDRAATLVLQSKGD---DSVDAS 64

Query: 75  DRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYF 134
           DR+ISA+CYFYPFFDG+QYGK++ITQY PFQ+LIQPL PAIR FKSFPFNGFL+F+TLYF
Sbjct: 65  DRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITLYF 124

Query: 135 VVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLI 194
           VVVRNPNFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVFLFLL+
Sbjct: 125 VVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVFLFLLV 184

Query: 195 CLIYGSSSCLLGQVPRLPIVADAADRQVM 221
            LIYG S+CL G  PRLP+VA+AADRQV+
Sbjct: 185 SLIYGFSACLFGLTPRLPLVAEAADRQVL 209

[Close]

BLAST of CmoCh16G010040 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 135.6 bits (340), Expect = 4.9e-32
Identity = 80/197 (40.61%), Postives = 112/197 (56.85%), Query Frame = 0


Query: 25  LSNPRTTAATTTLTNQINFTTLRRRRRRRILTVRSSGDRDNNTADGPDRLISAICYFYPF 84
           LS PR    + +      F+     RR   LT R+S           +R+IS   Y  PF
Sbjct: 16  LSAPRCRPLSLSFPGSSTFSIRPSSRRATALTTRAS----YTPTPATERVISIASYALPF 75

Query: 85  FDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPFNGFLVFLTLYFVVVRNPNFSRYVR 144
           F+ +QYG+++  QY    +L +P+ P + +++S P+  F+ F  LY  VVRN +FSRYVR
Sbjct: 76  FNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFVAFFGLYLGVVRNTSFSRYVR 135

Query: 145 FNIMQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLL 204
           FN MQA+ LDVLL  P LL R  +P   GG G+  +M   + VF+F  +C +YG  S LL
Sbjct: 136 FNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGHTGVFVFSFMCFVYGVVSSLL 195

Query: 205 GQVPRLPIVADAADRQV 220
           G+ P +P VADAA RQ+
Sbjct: 196 GKTPYIPFVADAAGRQL 208

The following BLAST results are available for this feature:

BLAST of CmoCh16G010040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FM67	1.3e-69	67.94	Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ...	[more]
O82251	6.9e-31	40.61	Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=...	[more]
P73387	2.0e-22	36.54	Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ...	[more]
O19916	1.2e-06	28.19	Tic20 family protein Ycf60 OS=Cyanidium caldarium OX=2771 GN=ycf60 PE=3 SV=1	[more]

BLAST of CmoCh16G010040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EW92	1.6e-115	100.00	Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111438760 PE=3 SV=1	[more]
A0A6J1HN42	9.8e-113	99.09	Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111465112 PE=3 SV=1	[more]
A0A5D3CPD4	2.1e-99	87.44	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00160...	[more]
A0A1S3BM16	2.1e-99	87.44	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103491027 PE=3 SV=1	[more]
A0A0A0L632	6.2e-91	84.38	Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_3G047830 PE=3 SV=1	[more]

BLAST of CmoCh16G010040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932396.1	3.3e-115	100.00	protein TIC 20-v, chloroplastic [Cucurbita moschata]	[more]
KAG6577521.1	1.8e-113	98.64	Protein TIC 20-v, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]...	[more]
XP_023553383.1	2.4e-113	99.55	protein TIC 20-v, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022965178.1	2.0e-112	99.09	protein TIC 20-v, chloroplastic [Cucurbita maxima]	[more]
XP_008449034.1	4.4e-99	87.44	PREDICTED: protein TIC 20-v, chloroplastic [Cucumis melo] >KAA0065731.1 protein ...	[more]

BLAST of CmoCh16G010040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55710.1	9.1e-71	67.94	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT2G47840.1	4.9e-32	40.61	Uncharacterised conserved protein ycf60	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 73..215 e-value: 1.2E-54 score: 184.9
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 37..220
None	No IPR available	PANTHER	PTHR33510:SF11	PROTEIN TIC 20-V, CHLOROPLASTIC	coord: 37..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010040.1	CmoCh16G010040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid