Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGTAAATATGATTTACTCGTTGTAGAAATGTGTTTAGTAGAGTATGACAACTCAACTTGGATACTAGATTCAGGGGCGACTAATCATATTTGTTCTTTTTACCAGGAAACTAGCTCCTGGAGAATGCTTGCGGACGGCGAGATAACACTCAGGGTTGGAACAGGAGAGGTTGTCTCAGCAAGATC
mRNA sequence
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGAAACTAGCTCCTGGAGAATGCTTGCGGACGGCGAGATAACACTCAGGGTTGGAACAGGAGAGGTTGTCTCAGCAAGATC
Coding sequence (CDS)
ATGACAAACTCAATAGTACAATTACTCGCTTCTGAGAAATTAAACGGCGACAACTACACAACTTGGAAATCAAACCTAAACACAATACTGGTCATTGATGATTTAAAGTTTGTTTTAACTGAGGAGTGTCCTCCAAACCCAAACTCAAATGCAAACCGAACAGCTCGGGATGCATATGACAGATGGATAAAGGCAAATGACAAAGCCCGAGTGTACATTCTAGCCAGCATATCTGATGTTTTGGCTAAGAAACACGATGTTATGGGTACTGCTAAAGAGATTATGGAATCTCTAAAAGGGATGTTTGGACAACCGTCCTTCTCCCTTAGACATGAAGCCATAAAATACATTTACAACTGCCGTATGAAAGAAGGGACCTCAGTTAGAGAACATGTCCTGGACATGATGGTCCATTTCAATGTGGCAGAAGAAAATGAAGCTGTCATTGATGAGAAGAGTCAAGTCAGTTTTATCATGATGTCTCTTCCGAAGAGCTTCTTCCAGTTCCGCACCAATGTGGTTATGAACAAAATAGAATATAACTTGACTGCTCTTCTCAATGAGCTACAGACTTATCAGTCCCTCTTAACAAACAAGGGACAAACAGGAGAAGCAAATGTTGCCATCTCCAAGAAATTACTACGAGGATCGTCCTCCCAAAATAAGTCTGGACCTTCAACTTCTAAAAGTGTTTTGATGAAGAAGAAGGGAAAAGGGAAAAATAAGATTCCTACTAACCGCAAGAACAAGGTTCAAAAAGCAGATAAAGGAAAATGTTTCCATTGCAACGAAAACGGGCACTGGAAGAGAAATTGCCCAAAATACCTTGCAGAGAAGAAAGCCGAAAAGACACAACAAGGAAACTAG
Protein sequence
MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQTYQSLLTNKGQTGEANVAISKKLLRGSSSQNKSGPSTSKSVLMKKKGKGKNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQGN
Homology
BLAST of CmoCh16G009780 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 58.5 bits (140), Expect = 1.4e-07
Identity = 58/264 (21.97%), Postives = 108/264 (40.91%), Query Frame = 0
Query: 13 KLNGDN-YTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYDRWIKANDKARV 72
K NGDN ++TW+ + +L+ L VL + A + W +++A
Sbjct: 10 KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKA--------EDWADLDERAAS 69
Query: 73 YILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNCRMKEGTSVREH 132
I +SD + TA+ I L+ ++ + + + K +Y M EGT+ H
Sbjct: 70 AIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSH 129
Query: 133 VLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEYNLTALLNELQT 192
+ I+E+ + ++ SLP S+ T ++ K L + + L
Sbjct: 130 LNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLL 189
Query: 193 YQSLLTNKGQTGEANV--AISKKLLRGSSSQNKSGPSTSKSVLMKKKGKGKNKIPTNRKN 252
+ + G+A + + R S++ +SG +GK KN+ + +N
Sbjct: 190 NEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSG----------ARGKSKNRSKSRVRN 246
Query: 253 KVQKADKGKCFHCNENGHWKRNCP 274
C++CN+ GH+KR+CP
Sbjct: 250 ---------CYNCNQPGHFKRDCP 246
BLAST of CmoCh16G009780 vs. ExPASy TrEMBL
Match:
E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)
HSP 1 Score: 395.6 bits (1015), Expect = 1.8e-106
Identity = 208/288 (72.22%), Postives = 240/288 (83.33%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
M SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP P NANRT R+AYD
Sbjct: 1 MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY
Sbjct: 61 RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGTSVREHVLDMM+HFN+AE N IDE +QVSFI+ SLPKSF F+TN +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ +Q+L +KG+ EANVA++K K +RGSSS+NK GPS ++ MKKKGKG
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQ---MKKKGKG 240
Query: 241 KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
K P K K + ADKGKCFHCN++GHWKRNCPKYLAEKKAEK QG
Sbjct: 241 --KAPNTSKVK-KNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQG 282
BLAST of CmoCh16G009780 vs. ExPASy TrEMBL
Match:
A0A5D3E7W3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G00700 PE=4 SV=1)
HSP 1 Score: 371.7 bits (953), Expect = 2.8e-99
Identity = 199/289 (68.86%), Postives = 234/289 (80.97%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
+ +SIVQLLASEKLNGDNY WKSNLNTILV+DDL+FVLTEE P P SNANRT+R AYD
Sbjct: 35 INSSIVQLLASEKLNGDNYAAWKSNLNTILVVDDLRFVLTEEYPQIPTSNANRTSRKAYD 94
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RW+KAN+KARVYILA ++DVLAKKH+ + TAKEIM++LK MFGQP +SLRHEAIKYIY
Sbjct: 95 RWVKANEKARVYILAIMTDVLAKKHESLATAKEIMDALKVMFGQPKWSLRHEAIKYIYTK 154
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGT VREHVLDMM+ FN+AE N+ IDE +QVSFI+ SLPKSF F+TN +NKIE+
Sbjct: 155 RMKEGTYVREHVLDMMMQFNIAEVNDGAIDETNQVSFILESLPKSFIPFQTNASLNKIEF 214
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ +Q+L KG+ EANVAI+K K RGSSS+ K+GP K + KKKGKG
Sbjct: 215 NLTTLLNELQQFQTLTMGKGKQVEANVAITKRKFSRGSSSKTKAGPLKPKPQI-KKKGKG 274
Query: 241 KNKIPTNRKNKVQKA-DKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
K T ++NK +KA +KGKC+H +NGHW RNCPKYLAEKKAEK QG
Sbjct: 275 K----TPKQNKGKKASEKGKCYHYGQNGHWLRNCPKYLAEKKAEKETQG 318
BLAST of CmoCh16G009780 vs. ExPASy TrEMBL
Match:
A0A5D3CJ27 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001090 PE=4 SV=1)
HSP 1 Score: 370.5 bits (950), Expect = 6.2e-99
Identity = 195/288 (67.71%), Postives = 230/288 (79.86%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
M +SIVQLLASEKLNGDNY WKSNLNTILV++DL+FVLTEECPP P SNANRT+R+AYD
Sbjct: 1 MNSSIVQLLASEKLNGDNYAAWKSNLNTILVVEDLRFVLTEECPPTPTSNANRTSREAYD 60
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RWIKAN+KA VYIL S+ DVLAKKH+ + AKEIM+SLKGMFGQ +SL+HEAIKYIY
Sbjct: 61 RWIKANEKACVYILVSMFDVLAKKHESLAMAKEIMDSLKGMFGQLEWSLKHEAIKYIYTK 120
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGT VREHVL+MM+HFN+AE N IDE +QVSFI+ SLPKSF F+TN ++KIE+
Sbjct: 121 RMKEGTFVREHVLNMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQTNASLSKIEF 180
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ++Q+L KG+ EANVA +K K RG SS++K GPS + +KKGKG
Sbjct: 181 NLTTLLNELQSFQNLTMGKGKEVEANVATTKRKFSRGLSSKSKDGPSKPNRKI-EKKGKG 240
Query: 241 KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
N P K K + +KGKC+HC ENGHW RNCPKYLA+KKAEK QG
Sbjct: 241 NN--PKQNKGK-KTTEKGKCYHCGENGHWLRNCPKYLAQKKAEKEAQG 284
BLAST of CmoCh16G009780 vs. ExPASy TrEMBL
Match:
A0A5A7TWX1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001820 PE=4 SV=1)
HSP 1 Score: 369.8 bits (948), Expect = 1.1e-98
Identity = 198/288 (68.75%), Postives = 232/288 (80.56%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
M + IVQLLASEKLN DNYTTWKSNLNTILV+DDL+FVLTEECP P SNANRT+R+AYD
Sbjct: 1 MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSREAYD 60
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM+SLKGMFGQP +SLRH+AIKYIY
Sbjct: 61 RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGTS+REHVL MM+HFN+AE N IDE +QVSFI+ SLPKSF F+TNV +NKIE+
Sbjct: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQTNVSLNKIEF 180
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ +Q+L K + EAN+A +K K RGSSS++K GPS + +KKGKG
Sbjct: 181 NLTTLLNELQRFQNLTMGKAKEMEANIATTKGKFSRGSSSKSKVGPSKPNRKI-EKKGKG 240
Query: 241 KNKIPTNRKNKVQKAD-KGKCFHCNENGHWKRNCPKYLAEKKAEKTQQ 287
K T ++NK +K KGKC+HC ENGH NCPKYL +KKAEK Q
Sbjct: 241 K----TPKQNKGKKTQGKGKCYHCGENGHSLINCPKYLTQKKAEKEAQ 283
BLAST of CmoCh16G009780 vs. ExPASy TrEMBL
Match:
A0A5D3BPM3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G00170 PE=4 SV=1)
HSP 1 Score: 366.3 bits (939), Expect = 1.2e-97
Identity = 196/285 (68.77%), Postives = 227/285 (79.65%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
M NSIVQLLASEKLN +NY WKSNLNTILV+DDL+FVLTEECP P SNANR ++ AYD
Sbjct: 1 MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRASQKAYD 60
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RWIKAN K VYILAS+SDVLAKKH+ + T KEI++SLKGMFGQP +SLRHEAIKYIY
Sbjct: 61 RWIKANGKVCVYILASMSDVLAKKHESLATTKEIVDSLKGMFGQPDWSLRHEAIKYIYTK 120
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGTSVREHVLDMM+HFN+AE N VIDE QVSFI+ SL KSF F+TN +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFILESLLKSFIPFQTNASLNKIEF 180
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ +Q+L KG+ EANVA +K K RGSSS++K GPS S MKKKG G
Sbjct: 181 NLTTLLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSRSKYGPS-KLSRKMKKKGNG 240
Query: 241 KNKIPTNRKNKVQK-ADKGKCFHCNENGHWKRNCPKYLAEKKAEK 284
K T ++NKV+K +KGKC+HC ENGHW +NCPKYLA+KK +
Sbjct: 241 K----TPKQNKVKKTTEKGKCYHCGENGHWLKNCPKYLAQKKGRE 280
BLAST of CmoCh16G009780 vs. NCBI nr
Match:
ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])
HSP 1 Score: 395.6 bits (1015), Expect = 3.7e-106
Identity = 208/288 (72.22%), Postives = 240/288 (83.33%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
M SIVQLLASEKLNGDNY+ WKSNLNTILV+DDL+FVLTEECP P NANRT R+AYD
Sbjct: 1 MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RW+KANDKARVYILAS++DVLAKKHD + TAK IM+SL+ MFGQPS+SLRHEAIK+IY
Sbjct: 61 RWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTK 120
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGTSVREHVLDMM+HFN+AE N IDE +QVSFI+ SLPKSF F+TN +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEF 180
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ +Q+L +KG+ EANVA++K K +RGSSS+NK GPS ++ MKKKGKG
Sbjct: 181 NLTTLLNELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQ---MKKKGKG 240
Query: 241 KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
K P K K + ADKGKCFHCN++GHWKRNCPKYLAEKKAEK QG
Sbjct: 241 --KAPNTSKVK-KNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQG 282
BLAST of CmoCh16G009780 vs. NCBI nr
Match:
TYK31700.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 371.7 bits (953), Expect = 5.7e-99
Identity = 199/289 (68.86%), Postives = 234/289 (80.97%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
+ +SIVQLLASEKLNGDNY WKSNLNTILV+DDL+FVLTEE P P SNANRT+R AYD
Sbjct: 35 INSSIVQLLASEKLNGDNYAAWKSNLNTILVVDDLRFVLTEEYPQIPTSNANRTSRKAYD 94
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RW+KAN+KARVYILA ++DVLAKKH+ + TAKEIM++LK MFGQP +SLRHEAIKYIY
Sbjct: 95 RWVKANEKARVYILAIMTDVLAKKHESLATAKEIMDALKVMFGQPKWSLRHEAIKYIYTK 154
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGT VREHVLDMM+ FN+AE N+ IDE +QVSFI+ SLPKSF F+TN +NKIE+
Sbjct: 155 RMKEGTYVREHVLDMMMQFNIAEVNDGAIDETNQVSFILESLPKSFIPFQTNASLNKIEF 214
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ +Q+L KG+ EANVAI+K K RGSSS+ K+GP K + KKKGKG
Sbjct: 215 NLTTLLNELQQFQTLTMGKGKQVEANVAITKRKFSRGSSSKTKAGPLKPKPQI-KKKGKG 274
Query: 241 KNKIPTNRKNKVQKA-DKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
K T ++NK +KA +KGKC+H +NGHW RNCPKYLAEKKAEK QG
Sbjct: 275 K----TPKQNKGKKASEKGKCYHYGQNGHWLRNCPKYLAEKKAEKETQG 318
BLAST of CmoCh16G009780 vs. NCBI nr
Match:
TYK11933.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 370.5 bits (950), Expect = 1.3e-98
Identity = 195/288 (67.71%), Postives = 230/288 (79.86%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
M +SIVQLLASEKLNGDNY WKSNLNTILV++DL+FVLTEECPP P SNANRT+R+AYD
Sbjct: 1 MNSSIVQLLASEKLNGDNYAAWKSNLNTILVVEDLRFVLTEECPPTPTSNANRTSREAYD 60
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RWIKAN+KA VYIL S+ DVLAKKH+ + AKEIM+SLKGMFGQ +SL+HEAIKYIY
Sbjct: 61 RWIKANEKACVYILVSMFDVLAKKHESLAMAKEIMDSLKGMFGQLEWSLKHEAIKYIYTK 120
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGT VREHVL+MM+HFN+AE N IDE +QVSFI+ SLPKSF F+TN ++KIE+
Sbjct: 121 RMKEGTFVREHVLNMMMHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQTNASLSKIEF 180
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ++Q+L KG+ EANVA +K K RG SS++K GPS + +KKGKG
Sbjct: 181 NLTTLLNELQSFQNLTMGKGKEVEANVATTKRKFSRGLSSKSKDGPSKPNRKI-EKKGKG 240
Query: 241 KNKIPTNRKNKVQKADKGKCFHCNENGHWKRNCPKYLAEKKAEKTQQG 288
N P K K + +KGKC+HC ENGHW RNCPKYLA+KKAEK QG
Sbjct: 241 NN--PKQNKGK-KTTEKGKCYHCGENGHWLRNCPKYLAQKKAEKEAQG 284
BLAST of CmoCh16G009780 vs. NCBI nr
Match:
KAA0048103.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 369.8 bits (948), Expect = 2.2e-98
Identity = 198/288 (68.75%), Postives = 232/288 (80.56%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
M + IVQLLASEKLN DNYTTWKSNLNTILV+DDL+FVLTEECP P SNANRT+R+AYD
Sbjct: 1 MNSLIVQLLASEKLNRDNYTTWKSNLNTILVVDDLRFVLTEECPQTPASNANRTSREAYD 60
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RWIKAN+KARVYILAS+SDVLAKKH+ + TAKEIM+SLKGMFGQP +SLRH+AIKYIY
Sbjct: 61 RWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSLRHKAIKYIYTK 120
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGTS+REHVL MM+HFN+AE N IDE +QVSFI+ SLPKSF F+TNV +NKIE+
Sbjct: 121 RMKEGTSIREHVLYMMIHFNIAEVNGGAIDEANQVSFILESLPKSFIPFQTNVSLNKIEF 180
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ +Q+L K + EAN+A +K K RGSSS++K GPS + +KKGKG
Sbjct: 181 NLTTLLNELQRFQNLTMGKAKEMEANIATTKGKFSRGSSSKSKVGPSKPNRKI-EKKGKG 240
Query: 241 KNKIPTNRKNKVQKAD-KGKCFHCNENGHWKRNCPKYLAEKKAEKTQQ 287
K T ++NK +K KGKC+HC ENGH NCPKYL +KKAEK Q
Sbjct: 241 K----TPKQNKGKKTQGKGKCYHCGENGHSLINCPKYLTQKKAEKEAQ 283
BLAST of CmoCh16G009780 vs. NCBI nr
Match:
TYK01653.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 366.3 bits (939), Expect = 2.4e-97
Identity = 196/285 (68.77%), Postives = 227/285 (79.65%), Query Frame = 0
Query: 1 MTNSIVQLLASEKLNGDNYTTWKSNLNTILVIDDLKFVLTEECPPNPNSNANRTARDAYD 60
M NSIVQLLASEKLN +NY WKSNLNTILV+DDL+FVLTEECP P SNANR ++ AYD
Sbjct: 1 MNNSIVQLLASEKLNDNNYAAWKSNLNTILVVDDLRFVLTEECPQTPASNANRASQKAYD 60
Query: 61 RWIKANDKARVYILASISDVLAKKHDVMGTAKEIMESLKGMFGQPSFSLRHEAIKYIYNC 120
RWIKAN K VYILAS+SDVLAKKH+ + T KEI++SLKGMFGQP +SLRHEAIKYIY
Sbjct: 61 RWIKANGKVCVYILASMSDVLAKKHESLATTKEIVDSLKGMFGQPDWSLRHEAIKYIYTK 120
Query: 121 RMKEGTSVREHVLDMMVHFNVAEENEAVIDEKSQVSFIMMSLPKSFFQFRTNVVMNKIEY 180
RMKEGTSVREHVLDMM+HFN+AE N VIDE QVSFI+ SL KSF F+TN +NKIE+
Sbjct: 121 RMKEGTSVREHVLDMMMHFNIAEVNGGVIDEAKQVSFILESLLKSFIPFQTNASLNKIEF 180
Query: 181 NLTALLNELQTYQSLLTNKGQTGEANVAISK-KLLRGSSSQNKSGPSTSKSVLMKKKGKG 240
NLT LLNELQ +Q+L KG+ EANVA +K K RGSSS++K GPS S MKKKG G
Sbjct: 181 NLTTLLNELQRFQNLTKGKGKEVEANVATTKGKFKRGSSSRSKYGPS-KLSRKMKKKGNG 240
Query: 241 KNKIPTNRKNKVQK-ADKGKCFHCNENGHWKRNCPKYLAEKKAEK 284
K T ++NKV+K +KGKC+HC ENGHW +NCPKYLA+KK +
Sbjct: 241 K----TPKQNKVKKTTEKGKCYHCGENGHWLKNCPKYLAQKKGRE 280
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 1.4e-07 | 21.97 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
E2GK51 | 1.8e-106 | 72.22 | Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1 | [more] |
A0A5D3E7W3 | 2.8e-99 | 68.86 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold398G0070... | [more] |
A0A5D3CJ27 | 6.2e-99 | 67.71 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G0010... | [more] |
A0A5A7TWX1 | 1.1e-98 | 68.75 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G0018... | [more] |
A0A5D3BPM3 | 1.2e-97 | 68.77 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold128G0017... | [more] |
Match Name | E-value | Identity | Description | |