CmoCh16G009370 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G009370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LIM and calponin domains-containing protein 1, putative
Location	Cmo_Chr16: 5910319 .. 5910804 (-)
RNA-Seq Expression	CmoCh16G009370
Synteny	CmoCh16G009370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGGTTGAAGAGATCCGAAATTGTTCTTGTTTTGTGCCTCACCCTTCTTCTTCTAATAACGCCTCTTCTTTCCTCATCCCTTAGACCCACATATCTCTACTTCGTCTTCAACCTCCTCATCCTTGGCCTTCTCTCCTCTGCCTTCCCAAATAATGCTCACAGCCCCAACACCACCCCTTCCCCTCACACCTCTGCCAACAACCACAGGGCTCTAGAGAAGGCCCATTCCGACAACATTCCCCCTCCCAATCCCAAAATCGAATCTCTCAACAAGTGTCCCTCTGCTTCCACCATTTTCTTCATCGGAGATGTCGACAGTGAGGAGGCGGAAGAGGAGGCTTCTGGCGGCGGCGCCGGTGGAAATGGGCAAGACTTGTTTGCCCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGGAGATGCAGAAACAGGAGTCTTGGAAGAATGTTCATGGTTTCTATCGGAAACCCTTTTGA

mRNA sequence

ATGAGCAGGTTGAAGAGATCCGAAATTGTTCTTGTTTTGTGCCTCACCCTTCTTCTTCTAATAACGCCTCTTCTTTCCTCATCCCTTAGACCCACATATCTCTACTTCGTCTTCAACCTCCTCATCCTTGGCCTTCTCTCCTCTGCCTTCCCAAATAATGCTCACAGCCCCAACACCACCCCTTCCCCTCACACCTCTGCCAACAACCACAGGGCTCTAGAGAAGGCCCATTCCGACAACATTCCCCCTCCCAATCCCAAAATCGAATCTCTCAACAAGTGTCCCTCTGCTTCCACCATTTTCTTCATCGGAGATGTCGACAGTGAGGAGGCGGAAGAGGAGGCTTCTGGCGGCGGCGCCGGTGGAAATGGGCAAGACTTGTTTGCCCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGGAGATGCAGAAACAGGAGTCTTGGAAGAATGTTCATGGTTTCTATCGGAAACCCTTTTGA

Coding sequence (CDS)

ATGAGCAGGTTGAAGAGATCCGAAATTGTTCTTGTTTTGTGCCTCACCCTTCTTCTTCTAATAACGCCTCTTCTTTCCTCATCCCTTAGACCCACATATCTCTACTTCGTCTTCAACCTCCTCATCCTTGGCCTTCTCTCCTCTGCCTTCCCAAATAATGCTCACAGCCCCAACACCACCCCTTCCCCTCACACCTCTGCCAACAACCACAGGGCTCTAGAGAAGGCCCATTCCGACAACATTCCCCCTCCCAATCCCAAAATCGAATCTCTCAACAAGTGTCCCTCTGCTTCCACCATTTTCTTCATCGGAGATGTCGACAGTGAGGAGGCGGAAGAGGAGGCTTCTGGCGGCGGCGCCGGTGGAAATGGGCAAGACTTGTTTGCCCAAGCTGAGACGTTTATTGGGAACTTCTATAAGCAGTTGGAGATGCAGAAACAGGAGTCTTGGAAGAATGTTCATGGTTTCTATCGGAAACCCTTTTGA

Protein sequence

MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF

Homology

[Close]

BLAST of CmoCh16G009370 vs. ExPASy TrEMBL
Match: A0A6J1EWK2 (uncharacterized protein LOC111438634 OS=Cucurbita moschata OX=3662 GN=LOC111438634 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.9e-75
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60
           MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT
Sbjct: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60

Query: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA 120
           PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA
Sbjct: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA 120

Query: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN 153
           GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN
Sbjct: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN 152

[Close]

BLAST of CmoCh16G009370 vs. ExPASy TrEMBL
Match: A0A5D3DK86 (Putative LIM and calponin domains-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00520 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.0e-42
Identity = 108/185 (58.38%), Postives = 134/185 (72.43%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
           M++ K+SEI+++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++ 
Sbjct: 2   MNKFKKSEILVLLGLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61

Query: 61  HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
              N  +  SP T A++        HRALEKAHSD I   N K+ESL KCPSAS+IF+IG
Sbjct: 62  DKTNKLSLTSPETVASSTETSPLKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121

Query: 121 DVDS--------EEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGF 162
           + DS        E+ EEE  GGG   NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+HGF
Sbjct: 122 EGDSEAEETTGIEDMEEEVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIHGF 181

[Close]

BLAST of CmoCh16G009370 vs. ExPASy TrEMBL
Match: A0A0A0L509 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G074480 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-41
Identity = 108/187 (57.75%), Postives = 132/187 (70.59%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
           M++ K+SEIV++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++ 
Sbjct: 2   MNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61

Query: 61  HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
              N  +  SP T A++        HRALEKAHSD I   N K+ESL KCPSAS+IF+IG
Sbjct: 62  DKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121

Query: 121 DVDSEE----------AEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 162
           + DSE            EE   GGG   NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+H
Sbjct: 122 EGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIH 181

[Close]

BLAST of CmoCh16G009370 vs. ExPASy TrEMBL
Match: U7E225 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_0040s00200g PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 87/203 (42.86%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAF---- 60
           MS+LKRS+I+++  L  LL +TPL+SSSLRP YLYF+ NLLI+      GL+S+AF    
Sbjct: 1   MSKLKRSQILMLSILAALLFVTPLISSSLRPKYLYFIMNLLIIALGVEAGLISAAFSKPV 60

Query: 61  ----------------------PNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKI 120
                                 P + +  +TT   + +    + LEK+ S+NI     K+
Sbjct: 61  EQYKKHAVVPLTTKPARSFVMAPPDQYQASTTDQANEAPAKAKVLEKSSSENIVSTVVKV 120

Query: 121 E-SLNKCPSASTIFFIGDVD---------SEEAEEEASGGGAGGNGQDLFAQAETFIGNF 162
           +  + KCPS  ++FFIG  D         +EE EEEA G   G +GQ+LF +AETFIGNF
Sbjct: 121 DHKVKKCPSLPSLFFIGGGDHGTKAVEDVTEEHEEEAEGEVGGISGQELFTKAETFIGNF 180

[Close]

BLAST of CmoCh16G009370 vs. ExPASy TrEMBL
Match: B9I151 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G087000 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 87/203 (42.86%), Postives = 119/203 (58.62%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAF---- 60
           MS+LKRS+I+++  L  LL +TPL+SSSLRP YLYF+ NLLI+      GL+S+AF    
Sbjct: 1   MSKLKRSQILMLSILAALLFVTPLISSSLRPKYLYFIMNLLIIALGVEAGLISAAFSKPV 60

Query: 61  ----------------------PNNAHSPNTTPSPHTSANNHRALEKAHSDNIPPPNPKI 120
                                 P + +  +TT   + +    + LEK+ S+NI     K+
Sbjct: 61  EQYKKHAVVPLTTKPARSFVTAPPDQYQASTTDQANEAPAKAKVLEKSSSENIVSTVVKV 120

Query: 121 E-SLNKCPSASTIFFIGDVD---------SEEAEEEASGGGAGGNGQDLFAQAETFIGNF 162
           +  + KCPS  ++FFIG  D         +EE EEEA G   G +GQ+LF +AETFIGNF
Sbjct: 121 DHKVKKCPSLPSLFFIGGGDHGTKAVEDVTEEHEEEAEGEVGGISGQELFTKAETFIGNF 180

[Close]

BLAST of CmoCh16G009370 vs. NCBI nr
Match: KAG6577458.1 (hypothetical protein SDJN03_25032, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 305.4 bits (781), Expect = 2.8e-79
Identity = 158/161 (98.14%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60
           MSRLKRSE+VLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT
Sbjct: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60

Query: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA 120
           PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGD DSEEAEEEASGG A
Sbjct: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDGDSEEAEEEASGGAA 120

Query: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF 162
           GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF
Sbjct: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGFYRKPF 161

[Close]

BLAST of CmoCh16G009370 vs. NCBI nr
Match: XP_022932284.1 (uncharacterized protein LOC111438634 [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60
           MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT
Sbjct: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60

Query: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA 120
           PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA
Sbjct: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA 120

Query: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN 153
           GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN
Sbjct: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKN 152

[Close]

BLAST of CmoCh16G009370 vs. NCBI nr
Match: KAG7015529.1 (hypothetical protein SDJN02_23165, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.7 bits (735), Expect = 6.1e-74
Identity = 150/154 (97.40%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60
           MSRLKRSE+VLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT
Sbjct: 1   MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLILGLLSSAFPNNAHSPNTT 60

Query: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIGDVDSEEAEEEASGGGA 120
           PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPS STIFFIGD DSEEAEEEASGG A
Sbjct: 61  PSPHTSANNHRALEKAHSDNIPPPNPKIESLNKCPSPSTIFFIGDGDSEEAEEEASGGAA 120

Query: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 155
           GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH
Sbjct: 121 GGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 154

[Close]

BLAST of CmoCh16G009370 vs. NCBI nr
Match: KAA0055857.1 (putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa] >TYK24081.1 putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 6.1e-42
Identity = 108/185 (58.38%), Postives = 134/185 (72.43%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
           M++ K+SEI+++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++ 
Sbjct: 2   MNKFKKSEILVLLGLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61

Query: 61  HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
              N  +  SP T A++        HRALEKAHSD I   N K+ESL KCPSAS+IF+IG
Sbjct: 62  DKTNKLSLTSPETVASSTETSPLKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121

Query: 121 DVDS--------EEAEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVHGF 162
           + DS        E+ EEE  GGG   NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+HGF
Sbjct: 122 EGDSEAEETTGIEDMEEEVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIHGF 181

[Close]

BLAST of CmoCh16G009370 vs. NCBI nr
Match: KGN56109.1 (hypothetical protein Csa_011766 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.0e-41
Identity = 108/187 (57.75%), Postives = 132/187 (70.59%), Query Frame = 0


Query: 1   MSRLKRSEIVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
           M++ K+SEIV++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+      GLL+   P++ 
Sbjct: 2   MNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61

Query: 61  HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
              N  +  SP T A++        HRALEKAHSD I   N K+ESL KCPSAS+IF+IG
Sbjct: 62  DKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121

Query: 121 DVDSEE----------AEEEASGGGAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 162
           + DSE            EE   GGG   NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+H
Sbjct: 122 EGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIH 181

The following BLAST results are available for this feature:

BLAST of CmoCh16G009370 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G009370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EWK2	5.9e-75	100.00	uncharacterized protein LOC111438634 OS=Cucurbita moschata OX=3662 GN=LOC1114386...	[more]
A0A5D3DK86	3.0e-42	58.38	Putative LIM and calponin domains-containing protein 1 OS=Cucumis melo var. maku...	[more]
A0A0A0L509	1.9e-41	57.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G074480 PE=4 SV=1	[more]
U7E225	1.6e-27	42.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_0040s00200g PE=4...	[more]
B9I151	1.6e-27	42.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G087000 PE=4 ...	[more]

BLAST of CmoCh16G009370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577458.1	2.8e-79	98.14	hypothetical protein SDJN03_25032, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022932284.1	1.2e-74	100.00	uncharacterized protein LOC111438634 [Cucurbita moschata]	[more]
KAG7015529.1	6.1e-74	97.40	hypothetical protein SDJN02_23165, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0055857.1	6.1e-42	58.38	putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa...	[more]
KGN56109.1	4.0e-41	57.75	hypothetical protein Csa_011766 [Cucumis sativus]	[more]

BLAST of CmoCh16G009370 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 125..155 e-value: 4.1E-10 score: 39.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..85
None	No IPR available	PANTHER	PTHR36887:SF1	OS01G0532300 PROTEIN	coord: 53..159
None	No IPR available	PANTHER	PTHR36887	OS01G0532300 PROTEIN	coord: 1..47
None	No IPR available	PANTHER	PTHR36887	OS01G0532300 PROTEIN	coord: 53..159
None	No IPR available	PANTHER	PTHR36887:SF1	OS01G0532300 PROTEIN	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G009370.1	CmoCh16G009370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane