CmoCh16G009320 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G009320
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Rrna intron-encoded homing endonuclease
Location	Cmo_Chr16: 5791953 .. 5792202 (+)
RNA-Seq Expression	CmoCh16G009320
Synteny	CmoCh16G009320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTCAAACGAATAAGCTTGCCCCGCGCCCCGATCTTGGTGTGCGGGGGGCAAAGCATTCTTGTCGTATTATTCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCTTGGGCGTCACGCATCGCTGA

mRNA sequence

ATGGAGCTCAAACGAATAAGCTTGCCCCGCGCCCCGATCTTGGTGTGCGGGGGGCAAAGCATTCTTGTCGTATTATTCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCTTGGGCGTCACGCATCGCTGA

Coding sequence (CDS)

ATGGAGCTCAAACGAATAAGCTTGCCCCGCGCCCCGATCTTGGTGTGCGGGGGGCAAAGCATTCTTGTCGTATTATTCACAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGATCCCGCGAACCACCGAGTCTTTGAACGCAAGTTGCGCCCGGAGCCTTCTGGCCGAGGGCACGTCTGCTTGGGCGTCACGCATCGCTGA

Protein sequence

MELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKLRPEPSGRGHVCLGVTHR

Homology

[Close]

BLAST of CmoCh16G009320 vs. ExPASy TrEMBL
Match: A0A6A5L7G0 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043475 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.4e-18
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 128 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 187

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 188 RPKPLGRGHACLGVAHR 204

[Close]

BLAST of CmoCh16G009320 vs. ExPASy TrEMBL
Match: A0A6A5P378 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00049250 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.4e-18
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 155 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 214

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 215 RPKPLGRGHACLGVAHR 231

[Close]

BLAST of CmoCh16G009320 vs. ExPASy TrEMBL
Match: A0A6A5L9L7 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046678 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.4e-18
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 184 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 243

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 244 RPKPLGRGHACLGVAHR 260

[Close]

BLAST of CmoCh16G009320 vs. ExPASy TrEMBL
Match: A0A6A5L557 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046676 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.4e-18
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 162 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 221

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 222 RPKPLGRGHACLGVAHR 238

[Close]

BLAST of CmoCh16G009320 vs. ExPASy TrEMBL
Match: A0A6A5L5G1 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045024 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.4e-18
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 128 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 187

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 188 RPKPLGRGHACLGVAHR 204

[Close]

BLAST of CmoCh16G009320 vs. NCBI nr
Match: KAF1856291.1 (hypothetical protein Lal_00046676 [Lupinus albus])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 162 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 221

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 222 RPKPLGRGHACLGVAHR 238

[Close]

BLAST of CmoCh16G009320 vs. NCBI nr
Match: KAF1891678.1 (hypothetical protein Lal_00049250 [Lupinus albus])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 155 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 214

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 215 RPKPLGRGHACLGVAHR 231

[Close]

BLAST of CmoCh16G009320 vs. NCBI nr
Match: KAF1854745.1 (hypothetical protein Lal_00045024 [Lupinus albus])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 128 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 187

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 188 RPKPLGRGHACLGVAHR 204

[Close]

BLAST of CmoCh16G009320 vs. NCBI nr
Match: KAF1854964.1 (hypothetical protein Lal_00048032 [Lupinus albus] >KAF1855664.1 hypothetical protein Lal_00046555 [Lupinus albus] >KAF1855752.1 hypothetical protein Lal_00045081 [Lupinus albus] >KAF1855917.1 hypothetical protein Lal_00043575 [Lupinus albus] >KAF1855989.1 hypothetical protein Lal_00045252 [Lupinus albus])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 128 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 187

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 188 RPKPLGRGHACLGVAHR 204

[Close]

BLAST of CmoCh16G009320 vs. NCBI nr
Match: KAF1856293.1 (hypothetical protein Lal_00046678 [Lupinus albus])

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 49/77 (63.64%), Postives = 53/77 (68.83%), Query Frame = 0


Query: 2   ELKRISLPRAPILVCGGQSILVVLFTTTLGNGYLGSRIDEERSEMRYLDPANHRVFERKL 61
           +LK  S P +    C        L   TLGNGYLGS IDEERSEMRYL+P NHRVFERKL
Sbjct: 184 KLKSFSSPPSARRRCSCGRRCDTLILKTLGNGYLGSCIDEERSEMRYLNPVNHRVFERKL 243

Query: 62  RPEPSGRGHVCLGVTHR 79
           RP+P GRGH CLGV HR
Sbjct: 244 RPKPLGRGHACLGVAHR 260

The following BLAST results are available for this feature:

BLAST of CmoCh16G009320 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G009320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5L7G0	9.4e-18	63.64	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043475 PE=4 SV=1	[more]
A0A6A5P378	9.4e-18	63.64	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00049250 PE=4 SV=1	[more]
A0A6A5L9L7	9.4e-18	63.64	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046678 PE=4 SV=1	[more]
A0A6A5L557	9.4e-18	63.64	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00046676 PE=4 SV=1	[more]
A0A6A5L5G1	9.4e-18	63.64	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00045024 PE=4 SV=1	[more]

BLAST of CmoCh16G009320 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF1856291.1	1.9e-17	63.64	hypothetical protein Lal_00046676 [Lupinus albus]	[more]
KAF1891678.1	1.9e-17	63.64	hypothetical protein Lal_00049250 [Lupinus albus]	[more]
KAF1854745.1	1.9e-17	63.64	hypothetical protein Lal_00045024 [Lupinus albus]	[more]
KAF1854964.1	1.9e-17	63.64	hypothetical protein Lal_00048032 [Lupinus albus] >KAF1855664.1 hypothetical pro...	[more]
KAF1856293.1	1.9e-17	63.64	hypothetical protein Lal_00046678 [Lupinus albus]	[more]

BLAST of CmoCh16G009320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33220	BNAA09G04420D PROTEIN	coord: 51..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G009320.1	CmoCh16G009320.1	mRNA