CmoCh16G008660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G008660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Wound-responsive family protein
Location	Cmo_Chr16: 4619729 .. 4620001 (-)
RNA-Seq Expression	CmoCh16G008660
Synteny	CmoCh16G008660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGGAGTGCGGCTTGCAGGGCCTGGTTCGTGGCGGCAAGCATCGGCGCCGTGGAGGCCATGAAGGATCAAGGGGTTTGCCGTTGGAACAACCTCATCAAATCCCTGCACCAACACGGGAATAGCAAGCTCAGATCTTACTACCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCCAACCAGATCAACAAGTCTAGAGAGGAGAAGATGAGGAAAGTCATGGATTTGGGGTGTTTGGGTCCCAGTACCATCAGATTCTAG

mRNA sequence

ATGTCTCGGAGTGCGGCTTGCAGGGCCTGGTTCGTGGCGGCAAGCATCGGCGCCGTGGAGGCCATGAAGGATCAAGGGGTTTGCCGTTGGAACAACCTCATCAAATCCCTGCACCAACACGGGAATAGCAAGCTCAGATCTTACTACCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCCAACCAGATCAACAAGTCTAGAGAGGAGAAGATGAGGAAAGTCATGGATTTGGGGTGTTTGGGTCCCAGTACCATCAGATTCTAG

Coding sequence (CDS)

ATGTCTCGGAGTGCGGCTTGCAGGGCCTGGTTCGTGGCGGCAAGCATCGGCGCCGTGGAGGCCATGAAGGATCAAGGGGTTTGCCGTTGGAACAACCTCATCAAATCCCTGCACCAACACGGGAATAGCAAGCTCAGATCTTACTACCAAGCTAAGAAGCTCTCTGCTTCCTCTTCTTCCGCCATTGCCAACCAGATCAACAAGTCTAGAGAGGAGAAGATGAGGAAAGTCATGGATTTGGGGTGTTTGGGTCCCAGTACCATCAGATTCTAG

Protein sequence

MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSSAIANQINKSREEKMRKVMDLGCLGPSTIRF

Homology

[Close]

BLAST of CmoCh16G008660 vs. ExPASy TrEMBL
Match: A0A6J1EMN4 (uncharacterized protein LOC111435977 OS=Cucurbita moschata OX=3662 GN=LOC111435977 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.2e-42
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS
Sbjct: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AIANQINKSREEKMRKVMDLGCLGPSTIRF
Sbjct: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. ExPASy TrEMBL
Match: A0A6J1JD67 (uncharacterized protein LOC111483317 OS=Cucurbita maxima OX=3661 GN=LOC111483317 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.0e-41
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHG+SKLRSYYQAKKLSASSSS
Sbjct: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGSSKLRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AI+NQINKSREEKMRKVMDLGCLGPSTIRF
Sbjct: 61 AISNQINKSREEKMRKVMDLGCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. ExPASy TrEMBL
Match: A0A0A0L594 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099650 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MSRSA CRAWFVAASIGAVEA+KDQGVCRWNN+IKSL QHG +K+RSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AIANQI KSRE+KMRKVMDL CLGPSTIRF
Sbjct: 61 AIANQIKKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. ExPASy TrEMBL
Match: A0A5A7TZR6 (Putative wound-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00840 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.3e-36
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MSRSA CRAWFVAASIGAVEA+KDQGVCRWNN+IKSL QHG +K+RSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AIA QINKSRE+KMRKVMDL CLGPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. ExPASy TrEMBL
Match: A0A6J1JZW3 (uncharacterized protein LOC111489778 OS=Cucurbita maxima OX=3661 GN=LOC111489778 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MS+SAACRAWFVAASIGAVEA+KDQGVCRWNN+IKSL QHG +KLRSYY AKK+SASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKLRSYYPAKKISASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AI NQ+ +SREEKMRKVMDL CLGPSTIRF
Sbjct: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. NCBI nr
Match: XP_022929392.1 (uncharacterized protein LOC111435977 [Cucurbita moschata] >KAG6577397.1 hypothetical protein SDJN03_24971, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015474.1 hypothetical protein SDJN02_23110, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS
Sbjct: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AIANQINKSREEKMRKVMDLGCLGPSTIRF
Sbjct: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. NCBI nr
Match: XP_022985278.1 (uncharacterized protein LOC111483317 [Cucurbita maxima])

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 88/90 (97.78%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHG+SKLRSYYQAKKLSASSSS
Sbjct: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGSSKLRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AI+NQINKSREEKMRKVMDLGCLGPSTIRF
Sbjct: 61 AISNQINKSREEKMRKVMDLGCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. NCBI nr
Match: XP_038877273.1 (uncharacterized protein LOC120069557 [Benincasa hispida])

HSP 1 Score: 165.2 bits (417), Expect = 2.5e-37
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1   MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
           MS+SAACRAWFVAASIGAVEA+KDQGVCRWNN+IKSL QHG +K RSYYQAKKLSASSSS
Sbjct: 74  MSKSAACRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKFRSYYQAKKLSASSSS 133

Query: 61  AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
           AIANQINKSREEKMRKVMDL CLGPSTIRF
Sbjct: 134 AIANQINKSREEKMRKVMDLSCLGPSTIRF 163

[Close]

BLAST of CmoCh16G008660 vs. NCBI nr
Match: KAA0046885.1 (putative wound-induced protein [Cucumis melo var. makuwa] >TYK03263.1 putative wound-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MSRSA CRAWFVAASIGAVEA+KDQGVCRWNN+IKSL QHG +K+RSYYQAKKLSASSSS
Sbjct: 1  MSRSAVCRAWFVAASIGAVEALKDQGVCRWNNVIKSLQQHGKTKVRSYYQAKKLSASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AIA QINKSRE+KMRKVMDL CLGPSTIRF
Sbjct: 61 AIAYQINKSREDKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. NCBI nr
Match: KAG7031383.1 (hypothetical protein SDJN02_05423, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 2.4e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MSRSAACRAWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSS 60
          MS+SAACRAWFVAASIGAVEA KDQGVCRWNN+IKSL QHG +KLRSYYQAKK+SASSSS
Sbjct: 1  MSKSAACRAWFVAASIGAVEASKDQGVCRWNNVIKSLQQHGKTKLRSYYQAKKISASSSS 60

Query: 61 AIANQINKSREEKMRKVMDLGCLGPSTIRF 91
          AI NQ+ +SREEKMRKVMDL CLGPSTIRF
Sbjct: 61 AIGNQMKRSREEKMRKVMDLSCLGPSTIRF 90

[Close]

BLAST of CmoCh16G008660 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-15
Identity = 48/84 (57.14%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 4  SAACRAWFVAASIGAVEAMKDQ-GVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSSAI 63
          S+A + W VAASIGAVEA+KDQ GVCRWN +I+S +Q+  + LRS  QAKKL  SSSS  
Sbjct: 2  SSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKL--SSSSID 61

Query: 64 ANQINKSREEKMRKVMDLGCLGPS 87
               K  EE +R VM L C GPS
Sbjct: 62 YTNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of CmoCh16G008660 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-14
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 4  SAACRAWFVAASIGAVEAMKDQ-GVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSSAI 63
          S+  +AW VA SIGAVEA+KDQ G+CRWN +++S++QH  + +RS  Q K+ S+SS SA 
Sbjct: 2  SSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAA 61

Query: 64 ANQINKSR-----EEKMRKVMDLGCLGPS 87
               +S      EE +R VM L C GP+
Sbjct: 62 VTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of CmoCh16G008660 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 63.9 bits (154), Expect = 7.4e-11
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 9  AWFVAASIGAVEAMKDQGVCRWNNLIKSLHQHGNSKLRSYYQAKKLSASSSSAIANQINK 68
          +W VA +I AVE +KDQGV RWN L + LH+   +++R+     + S  +SS+ A  I  
Sbjct: 8  SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query: 69 SR------EEKMRKVMDLGCLGPSTIRF 91
                  E    K M L C GP+T+RF
Sbjct: 68 KPLSTTPFETSFEKAMGLSCFGPTTVRF 95

The following BLAST results are available for this feature:

BLAST of CmoCh16G008660 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G008660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMN4	8.2e-42	100.00	uncharacterized protein LOC111435977 OS=Cucurbita moschata OX=3662 GN=LOC1114359...	[more]
A0A6J1JD67	7.0e-41	97.78	uncharacterized protein LOC111483317 OS=Cucurbita maxima OX=3661 GN=LOC111483317...	[more]
A0A0A0L594	1.4e-36	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099650 PE=4 SV=1	[more]
A0A5A7TZR6	2.3e-36	88.89	Putative wound-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6J1JZW3	2.6e-35	85.56	uncharacterized protein LOC111489778 OS=Cucurbita maxima OX=3661 GN=LOC111489778...	[more]

BLAST of CmoCh16G008660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929392.1	1.7e-41	100.00	uncharacterized protein LOC111435977 [Cucurbita moschata] >KAG6577397.1 hypothet...	[more]
XP_022985278.1	1.4e-40	97.78	uncharacterized protein LOC111483317 [Cucurbita maxima]	[more]
XP_038877273.1	2.5e-37	91.11	uncharacterized protein LOC120069557 [Benincasa hispida]	[more]
KAA0046885.1	4.8e-36	88.89	putative wound-induced protein [Cucumis melo var. makuwa] >TYK03263.1 putative w...	[more]
KAG7031383.1	2.4e-35	86.67	hypothetical protein SDJN02_05423, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmoCh16G008660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	1.0e-15	57.14	Wound-responsive family protein	[more]
AT4G10270.1	2.5e-14	47.19	Wound-responsive family protein	[more]
AT4G33560.1	7.4e-11	38.64	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..85 e-value: 4.0E-25 score: 88.6
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 4..90
None	No IPR available	PANTHER	PTHR33090:SF69	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 4..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G008660.1	CmoCh16G008660.1	mRNA