CmoCh16G008380 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G008380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPMD domain-containing protein
LocationCmo_Chr16: 4405637 .. 4408213 (-)
RNA-Seq ExpressionCmoCh16G008380
SyntenyCmoCh16G008380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGAAACTCTTAAGAAACTGATTTAGTTTATAGCAGATGATATCAGAATATAAGTAACTGGCATCACAGAGGATCTTGGGCATCTTCTTCTTCCTCTTCCCTTGGCTTCTGTAAGTGCTTGCTTTTTGTTTATTATTCTCTTCTCATTCTTCTTTTAACACTTGCACATACACGGCCACCCCCACCCAAATGTGGGGAGCGCTCGATATCTTAATCATTGAAGCATGTAATGTAACAACTTAAGGCCACCGCTAGTAGAGCTTTCATACCCTTATAAAGGGTGTTTTGTTCTCCTCTCAATCGATGTGAGATCTCACAATTCATCTCCATTTGAGGCCAGTGTCCTCACTGGCACTCTGTTCCCTTCTCCGATCCATGGATCCATGTGGGACCCCCCAATCTACACCCTTTCGGGGCTCGGCGTCCTTGATGGCACACACCCCCCTTCGGGGCTAAGCCTCCTCGTTGGCATATCGCCCGGTGTCTGGACAGCCCAAGCCCACCGTAGCAGATATTGTCCTCTTTGGATTTTCCCTTTCAGGCTTCCCCTCAAGGTTTTTTAAAACGTGTCTGCTAGGAAGAGGTTTCCACACTCTTATAAAGAATGTTTCGTTCTACTCCCCAACCAAAACCGAAGTGGAATCTTACCTATAAGAATATGAAAAACAAAATATATTGGAAGTTCCTTCTTTTCTGCAGTTAGCTGAAGATCTAGAAAAGATAAGACAAAGACCCCTTCCCCCCACTTGACTCTATAAGGTGTGTGTGGTGTTGTTCCTTGTAGAATTGCCCTTATAAGATGTTTGCCCCTCTTGTATCAAAATTCGTGGCTCTGCCATGGGGATGGGATTCAAATAAGAATACTGAGAAAATCTGTTTCTTTTCAGAGCTAAGGGTCGTCAGCAGCAATACATTCTTATGTGGAAGCCATTTTCATCAGAATCAGTTTTTCTCCAAGCATTCAGTTGAAGAAGATTGAAACCACAGAGGTATGAGTGAGGTTGGTTCTGAAAGATCAGAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAGCTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTCCTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTACGTCTCGACCTGGGTTGTTTATCTTTATGTTTTAAGTTTCTTGGCTTGTGGGATTTAGATTCTTGTAACTCTTCAGTGCTTTCCCCTTCACTTGAAATAAGTGTTTCAGTTGCTGAGACTTTAAACTACTTCATATCATTATAGAATAAGCCTTCTTCCCCCTGAACAGATTTGCTTAGAAGATCAGTTTAAGACAACTTAAAGCCAACTCTTCTCATCTAGAATAACTACAAGTATGCTTGTCTGAACCACTCTTTTACTTCATCAAACAGGACCATAGAAGCTAACATTCTTTAGGAAATCAAGTGTTTCGAGTCTAGAATAATTATAAATACGTTTATCTTTCATATCTCGGTACTTTCTAGAATATGCGGAGATATCTATAACAGTCATACATTTTTTTCACCCTTCATACTTTCTTCTTAGTGCCAAAACTCAGTGGTAGAAAATGATACCTCGAGACTTGAAAGTAGATATCTTTTTCTCCAGTACAAACCGGTATTGAAGTTGATTTGTATGCATCTTGATCGATCACACGACATAGAATCGTACCAGACTCGTTTCACCAGCAGCTTCATAAGCTTCATCTCTTGACAAAACCTACACAGAAAACAACTGTTATTTCCTAACTAGTTTTGTTACTACCAAATCTAAAAAATAACTGTTCTCTTTGTCTTCTTCAAGAACATCATCTTTTATCATAACAGTGACAAGACACAGAACATCGACACAAACCAGTACCCATCATTACAGAATACATGCTTTTCTTTTAAGGTCAAGTCAAGTCAAGTCATTGCACTGAACATTGGAAATGATATGGTTTTGTTTGTTGAGCTTGTGGTTTTTCTATGGCAGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTGATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGAGGCAAATATATGGTATTTCTTGCCACCATAGAAAGCAGTTACTGTATTTAGGAAAACTATCAGCTTTGCTTTTTCTCAGAATAATAATACTTTGTGCTTCTTCACCCACAGGGAGATTTGCCAAATGCTGATACTTTTTTGTTCCCAGTTTCTCATCTGTAAATTGATTATCAAAGAAGTCAGCAGTATTTACACGATTCTACTTGTTTGATAAAGATTTGAGATATAAGTAGAAATCACCTCACTTTTATGCTCATCATTTTAGGCTGATGGTGAATCTCCGCTTCTT

mRNA sequence

TTAGAAACTCTTAAGAAACTGATTTAGTTTATAGCAGATGATATCAGAATATAAGTAACTGGCATCACAGAGGATCTTGGGCATCTTCTTCTTCCTCTTCCCTTGGCTTCTAGCTAAGGGTCGTCAGCAGCAATACATTCTTATGTGGAAGCCATTTTCATCAGAATCAGTTTTTCTCCAAGCATTCAGTTGAAGAAGATTGAAACCACAGAGGTATGAGTGAGGTTGGTTCTGAAAGATCAGAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAGCTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTCCTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTGATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGAGGCAAATATATGGTATTTCTTGCCACCATAGAAAGCAGTTACTGTATTTAGGAAAACTATCAGCTTTGCTTTTTCTCAGAATAATAATACTTTGTGCTTCTTCACCCACAGGGAGATTTGCCAAATGCTGATACTTTTTTGTTCCCAGTTTCTCATCTGTAAATTGATTATCAAAGAAGTCAGCAGTATTTACACGATTCTACTTGTTTGATAAAGATTTGAGATATAAGTAGAAATCACCTCACTTTTATGCTCATCATTTTAGGCTGATGGTGAATCTCCGCTTCTT

Coding sequence (CDS)

ATGAGTGAGGTTGGTTCTGAAAGATCAGAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAGCTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTCCTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTGATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGA

Protein sequence

MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Homology
[Close]
BLAST of CmoCh16G008380 vs. ExPASy TrEMBL
Match: A0A6J1EMJ9 (uncharacterized protein LOC111435885 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435885 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]
BLAST of CmoCh16G008380 vs. ExPASy TrEMBL
Match: A0A6J1J2I5 (uncharacterized protein LOC111482824 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482824 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.9e-73
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVPTSYASDFSVLMPGQ IPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]
BLAST of CmoCh16G008380 vs. ExPASy TrEMBL
Match: A0A6J1EM82 (uncharacterized protein LOC111435885 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435885 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.7e-70
Identity = 145/175 (82.86%), Postives = 145/175 (82.86%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT---------------------- 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT                      
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTNIIFYHNSDKTQNIDTNQYPSL 120

Query: 121 --------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 146
                   VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 QNTCFSFKVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 175

[Close]
BLAST of CmoCh16G008380 vs. ExPASy TrEMBL
Match: A0A6J1JAW6 (uncharacterized protein LOC111482824 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482824 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 142/175 (81.14%), Postives = 144/175 (82.29%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT---------------------- 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNT                      
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTSIIFYHNSDKTQNIDTNQYPPL 120

Query: 121 --------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 146
                   VPTSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 QNTCFSFKVPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 175

[Close]
BLAST of CmoCh16G008380 vs. ExPASy TrEMBL
Match: A0A6J1FV27 (uncharacterized protein LOC111447541 OS=Cucurbita moschata OX=3662 GN=LOC111447541 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.4e-64
Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSE+GSERS+SWNIYTT +QSP SSQTGIGQ+APWK+FGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSP-SSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSS-EVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTF 120
           IMAIFEHLFRPTS FSSS EVTNN A+SGP EKF SPNTVPTSYA+DFSVLMPGQ IPTF
Sbjct: 61  IMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTF 120

Query: 121 IAQPAPLPCQRERIYWPSHDHNFLGP 146
           IAQPAPLPCQRE  YWPSHDHNFLGP
Sbjct: 121 IAQPAPLPCQREGTYWPSHDHNFLGP 145

[Close]
BLAST of CmoCh16G008380 vs. NCBI nr
Match: XP_022929236.1 (uncharacterized protein LOC111435885 isoform X2 [Cucurbita moschata])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]
BLAST of CmoCh16G008380 vs. NCBI nr
Match: KAG6577368.1 (hypothetical protein SDJN03_24942, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015458.1 hypothetical protein SDJN02_23094, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.3 bits (734), Expect = 7.1e-74
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]
BLAST of CmoCh16G008380 vs. NCBI nr
Match: XP_022984567.1 (uncharacterized protein LOC111482824 isoform X2 [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 6.0e-73
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVPTSYASDFSVLMPGQ IPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]
BLAST of CmoCh16G008380 vs. NCBI nr
Match: XP_023552325.1 (uncharacterized protein LOC111810023 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 140/145 (96.55%), Postives = 141/145 (97.24%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQT IGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTSIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF S NTVPTSYASDFSVLMPGQ IPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFASLNTVPTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]
BLAST of CmoCh16G008380 vs. NCBI nr
Match: XP_022929232.1 (uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata] >XP_022929233.1 uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata] >XP_022929234.1 uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 145/175 (82.86%), Postives = 145/175 (82.86%), Query Frame = 0 

Query: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT---------------------- 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT                      
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTNIIFYHNSDKTQNIDTNQYPSL 120

Query: 121 --------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 146
                   VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 QNTCFSFKVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 175

[Close]
BLAST of CmoCh16G008380 vs. TAIR 10
Match: AT1G09812.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 68/133 (51.13%), Postives = 82/133 (61.65%), Query Frame = 0 

Query: 8   RSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEH 67
           +S SW+IY+  E            E PW+S  +SMNAISFGFVATAILISMFLIMAIFEH
Sbjct: 3   KSSSWSIYSPREGD---------SEGPWRS-STSMNAISFGFVATAILISMFLIMAIFEH 62

Query: 68  LFRP-TSPFSSSEVTNNSAESGPAE---KFISPNTVPTSYASDFSVLMPGQDIPTFIAQP 127
           LFRP  S F S          G ++        + VP S   D SV+MPG+ +P+ IA P
Sbjct: 63  LFRPENSSFDSPHQIRQRQRDGSSQFQKLADQASMVPVSTVVDVSVVMPGEKLPSHIALP 122

Query: 128 APLPCQRERIYWP 137
           APLPC+RE I+WP
Sbjct: 123 APLPCRREGIHWP 125

[Close]
BLAST of CmoCh16G008380 vs. TAIR 10
Match: AT1G11120.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-21
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 0 

Query: 22  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEV 81
           P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+  +++  
Sbjct: 17  PIGAPMNLRREEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSD 76

Query: 82  TNNS----------AESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQR 141
           +++S            +G A K    +   T Y++  SVLMPG DIPTFIA PAP+PC  
Sbjct: 77  SSSSRVLPGMDSRVGFNGAATKLGYQSPKMTVYSNGVSVLMPGDDIPTFIAHPAPVPCPP 136

[Close]
BLAST of CmoCh16G008380 vs. TAIR 10
Match: AT1G58007.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 91 Blast hits to 91 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-21
Identity = 65/133 (48.87%), Postives = 81/133 (60.90%), Query Frame = 0 

Query: 6   SERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIF 65
           S    +W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI 
Sbjct: 4   SRSIRTWSIYRTKDTS-----------------GSSMNAISFGFVATAILILMFIIMAIL 63

Query: 66  EHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAP 125
           EHLFR +   SS +V ++S     AEK    + VP +  SD SV+MPG  +P+++A PAP
Sbjct: 64  EHLFR-SDHSSSYDVDDSSQFQKLAEK---ASMVPVT-TSDVSVVMPGDKLPSYVALPAP 114

Query: 126 LPCQRERIYWPSH 139
            PC+RE I WPSH
Sbjct: 124 FPCRREGIRWPSH 114

[Close]
BLAST of CmoCh16G008380 vs. TAIR 10
Match: AT1G58007.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-21
Identity = 65/133 (48.87%), Postives = 81/133 (60.90%), Query Frame = 0 

Query: 6   SERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIF 65
           S    +W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI 
Sbjct: 4   SRSIRTWSIYRTKDTS-----------------GSSMNAISFGFVATAILILMFIIMAIL 63

Query: 66  EHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAP 125
           EHLFR +   SS +V ++S     AEK    + VP +  SD SV+MPG  +P+++A PAP
Sbjct: 64  EHLFR-SDHSSSYDVDDSSQFQKLAEK---ASMVPVT-TSDVSVVMPGDKLPSYVALPAP 114

Query: 126 LPCQRERIYWPSH 139
            PC+RE I WPSH
Sbjct: 124 FPCRREGIRWPSH 114

[Close]
BLAST of CmoCh16G008380 vs. TAIR 10
Match: AT1G11120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 270 Blast hits to 255 proteins in 62 species: Archae - 0; Bacteria - 2; Metazoa - 93; Fungi - 14; Plants - 126; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18
Identity = 63/156 (40.38%), Postives = 78/156 (50.00%), Query Frame = 0 

Query: 22  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSP------ 81
           P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+       
Sbjct: 17  PIGAPMNLRREEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSD 76

Query: 82  ------------------------FSSSEVTNN------SAESGPAEKFISPNTVPTSYA 141
                                   + S + +NN      S     +E FI      T Y+
Sbjct: 77  SSSSRVLPGMDSRVGFNGAATKLGYQSPKASNNRIVFSFSFNILKSELFIVIILRMTVYS 136

The following BLAST results are available for this feature:
BLAST of CmoCh16G008380 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G008380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EMJ91.2e-74100.00uncharacterized protein LOC111435885 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J2I52.9e-7397.93uncharacterized protein LOC111482824 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1EM826.7e-7082.86uncharacterized protein LOC111435885 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JAW61.7e-6881.14uncharacterized protein LOC111482824 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1FV279.4e-6488.36uncharacterized protein LOC111447541 OS=Cucurbita moschata OX=3662 GN=LOC1114475... [more]
BLAST of CmoCh16G008380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929236.12.5e-74100.00uncharacterized protein LOC111435885 isoform X2 [Cucurbita moschata][more]
KAG6577368.17.1e-7499.31hypothetical protein SDJN03_24942, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022984567.16.0e-7397.93uncharacterized protein LOC111482824 isoform X2 [Cucurbita maxima][more]
XP_023552325.11.3e-7096.55uncharacterized protein LOC111810023 [Cucurbita pepo subsp. pepo][more]
XP_022929232.11.4e-6982.86uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata] >XP_0229292... [more]
BLAST of CmoCh16G008380 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G09812.11.1e-2451.13unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G11120.21.5e-2146.15unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G58007.13.4e-2148.87unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G58007.23.4e-2148.87unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G11120.12.0e-1840.38unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..95
NoneNo IPR availablePANTHERPTHR33728CTTNBP 2 AMINO-TERMINAL-LIKE PROTEINcoord: 1..143
NoneNo IPR availablePANTHERPTHR33728:SF3MULTIDRUG RESISTANCE PROTEINcoord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G008380.1CmoCh16G008380.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane