CmoCh16G008080 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAAGGCACCAAAATGTGGAGAGAAGGGAACGTTGGCCTTGAGAGAGAGAGAGGGGGCAAATCATTTTGTACGAAAAAGGTGGGAAAAGGCATTTTTATGGAGAATCTTCCATGGAACTACGCACAGCATTGATCGGTAATCCATTCTCGCTTGCAATCCAACAATGGATATTCAATTTTATATACATCCTCTTTCAATTCCCCTTTTCTTTCTAGACCGGAAGACATTCTTGTAAGCTAAGCAATCGCAGCCCAATCGCCACCGTGTTCCGTCTCCTTACCGTTGCTTTCTTTTCCCGGCGGTGCTGGTGGGTCGGGGGTATTTTCGAGGGAGGTCCGACCAAGCCTCTGCCTGATCGCTTCACCGTCATCTCAATCCTCCCTTCGATTCTTTTAACTCTTCCAAAACTGGTGGGTATATGTAATTTGTTGCTTATCATCTTTTAATTTCTTCGTTTTCGAGGCTTTTGTTATGTATTTCTCGATCATATCCGGAAACCCTAGTTTTTCGTCTTTTGCTTGCGATTCCCTTTTGCCCCCTTCTGTGTCTTGATTTTCGTCCTTCTTTTGATTTCTTTTGTTTTCTGATCGATGATGCTTGTCTCAATTTTAGATGTTTTTCGCTTGTATAATCATCCATATTTCGCCTTTGTTCGACTCGAAAAATTATGATTACTCTGCCGCGTCATTTGTTGTGGACCCTTTGGGTTGCTCCATGGCTATGTTCGTCTATTACATTTTTGCAGCTCTATCGAGGGACGTTGATTTGGTAACATACATGCTTGGGAACTTGATTCTTCCTGTTCAGTTTAAACATTTCAGTGACCACTTTTCATTCTTCCTGGATTACCTTTGTTTGAAGCAAAATGAAATTTGCATTACGAAATAATCAAATTCTATCATGTTTGTTTGCCATATTATGGACAATATTTTTTGTGAATCAGAATAGAAACGCTGCTATTTGTACGTAAGATTATAGGCTAGGATGAAATGTTAGAGAAAAAATTTGGATGGAAGTCATCACTTCAGAGATGGGTTAACTGACATGTTGAATCTCGTGAGATGCTTATATACCCTGAATTATGATTTTGTTAATTGCTGCTTATGCTCTGTCTTTACAAATAATAGACTCGAGGTTGTCGATCAACATGCACAAATCAATTGAAGAACTAGGTAAAAATGAAAATAGCAGGAATGAAGCATGTGAGAACAATGAATATGCAAGGCTAGTCATAGCTAATGAAGCAGGTCCTTTGGAATCAGAGATTCTACAGCCTCAAGATAAACTGAAAAGCAAATCACCCTTGAAGCGGTGGATCAAAATTTCACTATGGTGCATTGTTAGTATTGTATTTCTTCTTGTTTTCTTCAAGTGGGGAGTGCCATTTCTTTTTGAGAAGGTAATTCCCATTAATTACATCACCATTTTTTCTGTTTATAAGCTATCTTTCAGCTGAACTGTAGAAAATTTAACCTGTCCCTGTTATTTATTTTGAGAACTTTTTATTTTCTTTTTCATTTCTGCTGCTCATAGTACAGATATGCTTGCAAACCTATGCAACTAACTTCGATTTAATAATGAGTTTGAATGTGGAATAATCATATCTGCAACTTTTTTTCTTTTCTGTTAAATTTCTTTATAATATTCGTATCTGCAAATCTTAATGTTGGTTCGTGATAAGGGCATTCTTACTGGAAAAAGAAAGTAATTAGTAAATGTTTGCATCAGCTGTAAAGCATCAAAGCATCTTAGAGAATGCGAGTTTGGGGAGTGGGAGGATGAGGTTTTCCTCCTCCCTTGCATGTTTCTTTGTTCTACAAAATCTTTCCTTTCTATAAAGGAATCTGCTACTACATAAATGTTGATACAGAATCATTTTAATTTTAATAAAAAAGTAACCAAGAGTGTAGTAAAATCTGCATATAGTGCATTGCTAAAGAGGATTTTGTGGTTTGTGTTCTTTTAGTATTGTTGTAGGCACAAAATTAATATGCTTTGAAATGGGACATCATCTTGATTATTGTCTGTATTATTGGGAGAACTTCAGTACTTGTTCTACAGTGGTCTCTAGAGCTTAAACTATGCTGATTGCAAATGCATGACCAAAATTATGTGATAAGGCAAAAAATTTGATGCAGAGAAGCAGTGATGAGCCGAGTGGTATCTTATTGTGACTTACGAATAAACCTACCGAATAATATTGTTCATTTGTCAATTAGAATACACATGACCTTTTTATGGTATTTTTAGTGTGTTTTGCTTTAAAAGTGTTCTATTGAATCTCTCACTCTCCGACGTCTGTACTTCCTATGATTTATTTGACCTCTATTTTTGCTCCCTGAGTTCATTTCAGGTCATCATCCCAATCATGAAGTGGGAAGCTACTGCCTTTCGTCGACCTATGCTTGCACTAATGCTTATTGCTTCTCTGGCATCCTTTCCCGTATTTTTTATTCCCTCTGGCCCTTCAATGTGGTTGGCTGGGATGATTTTTGGCTATGGCCTTGGGTTTGTTATAATAATGGTTGGAACAACTATTGGGATGGTCCTGCCATATTTAATTGGATTAATTTTCCGTGACCGCATTCATGTAAGACCTCTATCAGTTTTTTTTTTTTTCAAATTATCGTGGCAGATAACTGGACCTATACTTCACAATCTTTCATTTGGTTCTCTGATCTCTGTATATTCATTATTGTGCAGCTATGGTTAATGAGATGGCCTCGAAAAGCAGAAGTACTCAGGCTTGCTGGGGAAGGGAGCTGGTTTCGTCAGTTTCAAGTTGTTGCACTCTTCAGGGTTTCACCATTTCCCTACACTATTTTCAATTATGCAATTGTGGTAACAAGTATGAGATTTTGGCCCTATTTGTGCGGGTCCGTTGCAGGAATGATACCAGAGGCTTTCATTTACATTTACAGGTTTCTTTCTTAGTCCCTCGAACGACTTACTAATAATCGAAAAGAAAAGTTAATATGCTGGTGTGCATGAATATATAGAAAATAGGCCATTTTTTTTAGATTTACATGAATATTTTCAGGAATTGTGTTTCTGTCACTTCATATGAAACTAGAACATGTCTTAATTTTCTTAGATCATTCATATGAAACAGGAAGAATCTCTATCGAGATAACGATAATGATGGGGTGCATTTTATGGTTAATTCATAGATATTGCTATAACTGGAGTTCTTTAGATGGTAATGTAAGCTATCTCTAGATGGGACGTTCCGATTATTCAAGAAAACGAGAACTGTAAACAATGTTAACGTTTATCTAGTATTAATTCTTACTGCCATAATGCTTGTGCGGATGTAACCTTGTTATGCATAATCTGATATTTCCTTTCCCTAGACTTCTTTGCACTCGTTAACGTCGGCTAAACATATCAGCTTTACTTATATGCAGTGGTAGGCTAATGAGGACACTAGCAGATGTTCAATATGGAAAACATCGGCTCACGACTGTAGAGATTGTGTATAACGTCATCTCCTTCATCATCGCGATCGTCACTATTATTATTTTCACTGTTTATGCAAAAAAGATGCTGAACAACCTTCAAATGGAAGAAGATAATAGAAAGTATTCTGCCTCCCACCATGGTAGTTTCGAGGTAGAGAGTCTTTCGCACGAAAGGTACAAGTAGTTTGGTTTACTATCTAGATTGTCATTAGTGTAGGTTAGTTCCTGTAAAATTAATAATTAACCCAGACCATTCTGAATACACCACTGAATTAAGTTGTTCTTTAATGATTTTCAGGTTTACTTTATAAAAAAAAAAAAAAATTGTGATGATTTCTAAAGTAGTTCGAAAAATACGATAGCTGTTGGCTGGTCTGGAAATTGTGTGTTG AAAAAAAAAAAGGCACCAAAATGTGGAGAGAAGGGAACGTTGGCCTTGAGAGAGAGAGAGGGGGCAAATCATTTTGTACGAAAAAGGTGGGAAAAGGCATTTTTATGGAGAATCTTCCATGGAACTACGCACAGCATTGATCGACCGGAAGACATTCTTGTAAGCTAAGCAATCGCAGCCCAATCGCCACCGTGTTCCGTCTCCTTACCGTTGCTTTCTTTTCCCGGCGGTGCTGGTGGGTCGGGGGTATTTTCGAGGGAGGTCCGACCAAGCCTCTGCCTGATCGCTTCACCGTCATCTCAATCCTCCCTTCGATTCTTTTAACTCTTCCAAAACTGACTCGAGGTTGTCGATCAACATGCACAAATCAATTGAAGAACTAGGTAAAAATGAAAATAGCAGGAATGAAGCATGTGAGAACAATGAATATGCAAGGCTAGTCATAGCTAATGAAGCAGGTCCTTTGGAATCAGAGATTCTACAGCCTCAAGATAAACTGAAAAGCAAATCACCCTTGAAGCGGTGGATCAAAATTTCACTATGGTGCATTGTTAGTATTGTATTTCTTCTTGTTTTCTTCAAGTGGGGAGTGCCATTTCTTTTTGAGAAGGTCATCATCCCAATCATGAAGTGGGAAGCTACTGCCTTTCGTCGACCTATGCTTGCACTAATGCTTATTGCTTCTCTGGCATCCTTTCCCGTATTTTTTATTCCCTCTGGCCCTTCAATGTGGTTGGCTGGGATGATTTTTGGCTATGGCCTTGGGTTTGTTATAATAATGGTTGGAACAACTATTGGGATGGTCCTGCCATATTTAATTGGATTAATTTTCCGTGACCGCATTCATCTATGGTTAATGAGATGGCCTCGAAAAGCAGAAGTACTCAGGCTTGCTGGGGAAGGGAGCTGGTTTCGTCAGTTTCAAGTTGTTGCACTCTTCAGGGTTTCACCATTTCCCTACACTATTTTCAATTATGCAATTGTGGTAACAAGTATGAGATTTTGGCCCTATTTGTGCGGGTCCGTTGCAGGAATGATACCAGAGGCTTTCATTTACATTTACAGTGGTAGGCTAATGAGGACACTAGCAGATGTTCAATATGGAAAACATCGGCTCACGACTGTAGAGATTGTGTATAACGTCATCTCCTTCATCATCGCGATCGTCACTATTATTATTTTCACTGTTTATGCAAAAAAGATGCTGAACAACCTTCAAATGGAAGAAGATAATAGAAAGTATTCTGCCTCCCACCATGGTAGTTTCGAGGTAGAGAGTCTTTCGCACGAAAGGTACAAGTAGTTTGGTTTACTATCTAGATTGTCATTAGTGTAGGTTAGTTCCTGTAAAATTAATAATTAACCCAGACCATTCTGAATACACCACTGAATTAAGTTGTTCTTTAATGATTTTCAGGTTTACTTTATAAAAAAAAAAAAAAATTGTGATGATTTCTAAAGTAGTTCGAAAAATACGATAGCTGTTGGCTGGTCTGGAAATTGTGTGTTG ATGCACAAATCAATTGAAGAACTAGGTAAAAATGAAAATAGCAGGAATGAAGCATGTGAGAACAATGAATATGCAAGGCTAGTCATAGCTAATGAAGCAGGTCCTTTGGAATCAGAGATTCTACAGCCTCAAGATAAACTGAAAAGCAAATCACCCTTGAAGCGGTGGATCAAAATTTCACTATGGTGCATTGTTAGTATTGTATTTCTTCTTGTTTTCTTCAAGTGGGGAGTGCCATTTCTTTTTGAGAAGGTCATCATCCCAATCATGAAGTGGGAAGCTACTGCCTTTCGTCGACCTATGCTTGCACTAATGCTTATTGCTTCTCTGGCATCCTTTCCCGTATTTTTTATTCCCTCTGGCCCTTCAATGTGGTTGGCTGGGATGATTTTTGGCTATGGCCTTGGGTTTGTTATAATAATGGTTGGAACAACTATTGGGATGGTCCTGCCATATTTAATTGGATTAATTTTCCGTGACCGCATTCATCTATGGTTAATGAGATGGCCTCGAAAAGCAGAAGTACTCAGGCTTGCTGGGGAAGGGAGCTGGTTTCGTCAGTTTCAAGTTGTTGCACTCTTCAGGGTTTCACCATTTCCCTACACTATTTTCAATTATGCAATTGTGGTAACAAGTATGAGATTTTGGCCCTATTTGTGCGGGTCCGTTGCAGGAATGATACCAGAGGCTTTCATTTACATTTACAGTGGTAGGCTAATGAGGACACTAGCAGATGTTCAATATGGAAAACATCGGCTCACGACTGTAGAGATTGTGTATAACGTCATCTCCTTCATCATCGCGATCGTCACTATTATTATTTTCACTGTTTATGCAAAAAAGATGCTGAACAACCTTCAAATGGAAGAAGATAATAGAAAGTATTCTGCCTCCCACCATGGTAGTTTCGAGGTAGAGAGTCTTTCGCACGAAAGGTACAAGTAG MHKSIEELGKNENSRNEACENNEYARLVIANEAGPLESEILQPQDKLKSKSPLKRWIKISLWCIVSIVFLLVFFKWGVPFLFEKVIIPIMKWEATAFRRPMLALMLIASLASFPVFFIPSGPSMWLAGMIFGYGLGFVIIMVGTTIGMVLPYLIGLIFRDRIHLWLMRWPRKAEVLRLAGEGSWFRQFQVVALFRVSPFPYTIFNYAIVVTSMRFWPYLCGSVAGMIPEAFIYIYSGRLMRTLADVQYGKHRLTTVEIVYNVISFIIAIVTIIIFTVYAKKMLNNLQMEEDNRKYSASHHGSFEVESLSHERYK Homology
BLAST of CmoCh16G008080 vs. ExPASy Swiss-Prot
Match: Q55909 (TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr0305 PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 2.5e-10 Identity = 54/185 (29.19%), Postives = 94/185 (50.81%), Query Frame = 0
BLAST of CmoCh16G008080 vs. ExPASy Swiss-Prot
Match: Q6YI46 (Transmembrane protein 64 OS=Homo sapiens OX=9606 GN=TMEM64 PE=2 SV=2) HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05 Identity = 40/142 (28.17%), Postives = 69/142 (48.59%), Query Frame = 0
BLAST of CmoCh16G008080 vs. ExPASy Swiss-Prot
Match: Q3U145 (Transmembrane protein 64 OS=Mus musculus OX=10090 GN=Tmem64 PE=1 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 4.2e-05 Identity = 38/139 (27.34%), Postives = 68/139 (48.92%), Query Frame = 0
BLAST of CmoCh16G008080 vs. ExPASy TrEMBL
Match: A0A6J1EMS5 (uncharacterized protein LOC111435932 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435932 PE=4 SV=1) HSP 1 Score: 606.3 bits (1562), Expect = 7.3e-170 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
BLAST of CmoCh16G008080 vs. ExPASy TrEMBL
Match: A0A6J1EMG0 (uncharacterized protein LOC111435932 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435932 PE=4 SV=1) HSP 1 Score: 606.3 bits (1562), Expect = 7.3e-170 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
BLAST of CmoCh16G008080 vs. ExPASy TrEMBL
Match: A0A6J1JA06 (uncharacterized protein LOC111482628 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482628 PE=4 SV=1) HSP 1 Score: 595.9 bits (1535), Expect = 9.8e-167 Identity = 307/312 (98.40%), Postives = 311/312 (99.68%), Query Frame = 0
BLAST of CmoCh16G008080 vs. ExPASy TrEMBL
Match: A0A6J1J4T0 (uncharacterized protein LOC111482628 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482628 PE=4 SV=1) HSP 1 Score: 595.9 bits (1535), Expect = 9.8e-167 Identity = 307/312 (98.40%), Postives = 311/312 (99.68%), Query Frame = 0
BLAST of CmoCh16G008080 vs. ExPASy TrEMBL
Match: A0A6J1J880 (uncharacterized protein LOC111482628 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482628 PE=4 SV=1) HSP 1 Score: 595.9 bits (1535), Expect = 9.8e-167 Identity = 307/312 (98.40%), Postives = 311/312 (99.68%), Query Frame = 0
BLAST of CmoCh16G008080 vs. NCBI nr
Match: XP_022929310.1 (uncharacterized protein LOC111435932 isoform X1 [Cucurbita moschata] >XP_022929311.1 uncharacterized protein LOC111435932 isoform X1 [Cucurbita moschata]) HSP 1 Score: 606.3 bits (1562), Expect = 1.5e-169 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
BLAST of CmoCh16G008080 vs. NCBI nr
Match: XP_022929312.1 (uncharacterized protein LOC111435932 isoform X2 [Cucurbita moschata]) HSP 1 Score: 606.3 bits (1562), Expect = 1.5e-169 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 0
BLAST of CmoCh16G008080 vs. NCBI nr
Match: XP_023552045.1 (uncharacterized protein LOC111809841 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 604.0 bits (1556), Expect = 7.5e-169 Identity = 310/312 (99.36%), Postives = 312/312 (100.00%), Query Frame = 0
BLAST of CmoCh16G008080 vs. NCBI nr
Match: XP_023552047.1 (uncharacterized protein LOC111809841 isoform X3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 604.0 bits (1556), Expect = 7.5e-169 Identity = 310/312 (99.36%), Postives = 312/312 (100.00%), Query Frame = 0
BLAST of CmoCh16G008080 vs. NCBI nr
Match: XP_023552048.1 (uncharacterized protein LOC111809841 isoform X4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 604.0 bits (1556), Expect = 7.5e-169 Identity = 310/312 (99.36%), Postives = 312/312 (100.00%), Query Frame = 0
BLAST of CmoCh16G008080 vs. TAIR 10
Match: AT2G02370.1 (SNARE associated Golgi protein family ) HSP 1 Score: 385.6 bits (989), Expect = 3.9e-107 Identity = 197/272 (72.43%), Postives = 228/272 (83.82%), Query Frame = 0
BLAST of CmoCh16G008080 vs. TAIR 10
Match: AT2G02370.2 (SNARE associated Golgi protein family ) HSP 1 Score: 385.6 bits (989), Expect = 3.9e-107 Identity = 197/272 (72.43%), Postives = 228/272 (83.82%), Query Frame = 0
BLAST of CmoCh16G008080 vs. TAIR 10
Match: AT1G12450.1 (SNARE associated Golgi protein family ) HSP 1 Score: 223.0 bits (567), Expect = 3.3e-58 Identity = 117/276 (42.39%), Postives = 175/276 (63.41%), Query Frame = 0
BLAST of CmoCh16G008080 vs. TAIR 10
Match: AT4G22850.1 (SNARE associated Golgi protein family ) HSP 1 Score: 208.8 bits (530), Expect = 6.5e-54 Identity = 110/273 (40.29%), Postives = 170/273 (62.27%), Query Frame = 0
BLAST of CmoCh16G008080 vs. TAIR 10
Match: AT4G12000.1 (SNARE associated Golgi protein family ) HSP 1 Score: 201.4 bits (511), Expect = 1.0e-51 Identity = 99/237 (41.77%), Postives = 153/237 (64.56%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|