CmoCh16G007660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G007660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L23
Location	Cmo_Chr16: 3849343 .. 3849864 (+)
RNA-Seq Expression	CmoCh16G007660
Synteny	CmoCh16G007660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCTAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTTGGATTCAAAGCTTACAAGGGTTTTTCTAATAGAGACCGCCGACGAACTGGCAGTGCTGAAACTGTTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

mRNA sequence

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCTAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTTGGATTCAAAGCTTACAAGGGTTTTTCTAATAGAGACCGCCGACGAACTGGCAGTGCTGAAACTGTTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Coding sequence (CDS)

ATGGGAAGCAGACTCGGGAGAAGAGTTATTCACTTCGCTAATCTTCCAATCAAGCTTCTTATGCCAACCTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCCTTCTGCTTCCAAAATCGAAATCAAGCGCGTCCTTGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGTACTCTCAACATGGACGGGAAGAAAAAGAAGCGCGGAGGGCTTTTGATCGCAAAGCCTGATTACAAGAAGGCTTATGTTACTCTCAGGAATCCCTTATCAATCTCTCCGGACGTGTATCCGATCCGGATTATAGAGGAGGACAAGAGGAATATGAATAAACAGTCTAAGTCCAGCATTGTTGAGGAGGGCGAGGCCAAGAGGCATTGGCTACATGAGAAGGAGCCTGTTGGATTCAAAGCTTACAAGGGTTTTTCTAATAGAGACCGCCGACGAACTGGCAGTGCTGAAACTGTTGAACCATCGACTAAGTTTCCTTGGAGTAGCATGAGGTCTGGTAGGTAG

Protein sequence

MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR

Homology

[Close]

BLAST of CmoCh16G007660 vs. ExPASy Swiss-Prot
Match: Q605B4 (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 25/60 (41.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN+ GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

[Close]

BLAST of CmoCh16G007660 vs. ExPASy Swiss-Prot
Match: Q0I161 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ + GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNPLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]

BLAST of CmoCh16G007660 vs. ExPASy Swiss-Prot
Match: A0KF23 (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.1e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of CmoCh16G007660 vs. ExPASy Swiss-Prot
Match: A4ST04 (50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKIAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRSGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of CmoCh16G007660 vs. ExPASy Swiss-Prot
Match: Q0ABH3 (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.7e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL 89
          E+  K    A K EI++ +E L+  +V  VRT+ M GK+K+ G L   +PD+KKAYVTL
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTL 86

[Close]

BLAST of CmoCh16G007660 vs. ExPASy TrEMBL
Match: A0A6J1EUM4 (uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC111436066 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of CmoCh16G007660 vs. ExPASy TrEMBL
Match: A0A6J1JA70 (uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116 PE=3 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 5.0e-88
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVGFKAYKGFS+R RRRTGSAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of CmoCh16G007660 vs. ExPASy TrEMBL
Match: A0A6J1FSK6 (uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC111448049 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.3e-83
Identity = 162/173 (93.64%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE VG K YKGF++R RRR G AE VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of CmoCh16G007660 vs. ExPASy TrEMBL
Match: A0A0A0L0J2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.7e-83
Identity = 160/174 (91.95%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRSGR 174
           EEGEAK+HWLHEKEPVG K YKGF++R RRR+ G AETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSGR 174

[Close]

BLAST of CmoCh16G007660 vs. ExPASy TrEMBL
Match: A0A5D3CZJ7 (Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00540 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 160/174 (91.95%), Postives = 167/174 (95.98%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YPIRIIEEDKRNMNKQSKSSIV
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRT-GSAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVG K YKGF++R RRR  G AETVEPSTKFPWSSMRSGR
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSGR 249

[Close]

BLAST of CmoCh16G007660 vs. NCBI nr
Match: XP_022929525.1 (uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothetical protein SDJN03_24874, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.3 bits (874), Expect = 5.0e-90
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of CmoCh16G007660 vs. NCBI nr
Match: KAG7015390.1 (rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.4 bits (864), Expect = 7.2e-89
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS 172
           EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS 171

[Close]

BLAST of CmoCh16G007660 vs. NCBI nr
Match: XP_022985025.1 (uncharacterized protein LOC111483116 [Cucurbita maxima])

HSP 1 Score: 333.6 bits (854), Expect = 1.0e-87
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAKPDYKKAYVTLRN LSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPVGFKAYKGFS+R RRRTGSAETVEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSGR 173

[Close]

BLAST of CmoCh16G007660 vs. NCBI nr
Match: XP_023552749.1 (uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752.1 uncharacterized protein LOC111810293 [Cucurbita pepo subsp. pepo] >XP_023553074.1 uncharacterized protein LOC111810580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 328.9 bits (842), Expect = 2.6e-86
Identity = 166/173 (95.95%), Postives = 170/173 (98.27%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSK SIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKEPV FK+YKGF+NR RR+TGSAET+EPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEPVEFKSYKGFANRGRRQTGSAETIEPSTKFPWSSMRSGR 173

[Close]

BLAST of CmoCh16G007660 vs. NCBI nr
Match: XP_023531609.1 (uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 hypothetical protein SDJN03_05887, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031291.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 322.4 bits (825), Expect = 2.4e-84
Identity = 163/173 (94.22%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSGR 174
           EEGEAKRHWLHEKE VG K YKGF++R RRR G AE VEPSTKFPWSSMRSGR
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR 173

[Close]

BLAST of CmoCh16G007660 vs. TAIR 10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein )

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-53
Identity = 113/175 (64.57%), Postives = 128/175 (73.14%), Query Frame = 0


Query: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RV+HFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120
           TLNMDGKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P++ IEED+++  K S S + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWLHEKEPVGFKAY-KGFSNRDRRRTGS----AETVEPSTKFPWSSMR 171
           EE + K HWL  KE      Y KG   R   R  S          + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:

BLAST of CmoCh16G007660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q605B4	1.2e-06	41.67	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
Q0I161	1.6e-06	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW...	[more]
A0KF23	2.1e-06	45.76	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]
A4ST04	2.7e-06	45.76	50S ribosomal protein L23 OS=Aeromonas salmonicida (strain A449) OX=382245 GN=rp...	[more]
Q0ABH3	2.7e-06	45.76	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]

BLAST of CmoCh16G007660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUM4	2.4e-90	100.00	uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC1114360...	[more]
A0A6J1JA70	5.0e-88	97.69	uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116...	[more]
A0A6J1FSK6	1.3e-83	93.64	uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A0A0L0J2	3.7e-83	91.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1	[more]
A0A5D3CZJ7	1.8e-82	91.95	Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of CmoCh16G007660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929525.1	5.0e-90	100.00	uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothet...	[more]
KAG7015390.1	7.2e-89	100.00	rplW, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022985025.1	1.0e-87	97.69	uncharacterized protein LOC111483116 [Cucurbita maxima]	[more]
XP_023552749.1	2.6e-86	95.95	uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752....	[more]
XP_023531609.1	2.4e-84	94.22	uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 ...	[more]

BLAST of CmoCh16G007660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39880.1	8.8e-53	64.57	Ribosomal protein L23/L15e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 29..90 e-value: 1.7E-15 score: 57.1
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..172
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..138 e-value: 1.6E-23 score: 85.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..173
None	No IPR available	PANTHER	PTHR12059:SF7	BNAC07G51330D PROTEIN	coord: 5..172
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 9..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G007660.1	CmoCh16G007660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome