CmoCh16G006180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G006180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	cation/H(+) antiporter 18-like
Location	Cmo_Chr16: 3023907 .. 3024154 (+)
RNA-Seq Expression	CmoCh16G006180
Synteny	CmoCh16G006180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCAATGCGACCGTGTCCGGTGCTTGTCCGGCGTCCATGAAGGCCACCTCTAATGGCGTCTTCCAAGGCGATAACCCTTTGAATTATGCTCTCCCTCTCGCCATCCTTCAGATTTGTCTCGTCGTCCTCCTCACTAGACTCCTTTCCATTCTTCTTCGCCCCATTCGTCAGCCTCGTGTCATTGCTGAGATCGTCGTATGTATAATCTAATTCTCTTATCTCTTTAGATCACCACCATCTAA

mRNA sequence

ATGGCGACCAATGCGACCGTGTCCGGTGCTTGTCCGGCGTCCATGAAGGCCACCTCTAATGGCGTCTTCCAAGGCGATAACCCTTTGAATTATGCTCTCCCTCTCGCCATCCTTCAGATTTGTCTCGTCGTCCTCCTCACTAGACTCCTTTCCATTCTTCTTCGCCCCATTCGTCAGCCTCGTGTCATTGCTGAGATCGTCATCACCACCATCTAA

Coding sequence (CDS)

ATGGCGACCAATGCGACCGTGTCCGGTGCTTGTCCGGCGTCCATGAAGGCCACCTCTAATGGCGTCTTCCAAGGCGATAACCCTTTGAATTATGCTCTCCCTCTCGCCATCCTTCAGATTTGTCTCGTCGTCCTCCTCACTAGACTCCTTTCCATTCTTCTTCGCCCCATTCGTCAGCCTCGTGTCATTGCTGAGATCGTCATCACCACCATCTAA

Protein sequence

MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVIAEIVITTI

Homology

[Close]

BLAST of CmoCh16G006180 vs. ExPASy Swiss-Prot
Match: Q9FFR9 (Cation/H(+) antiporter 18 OS=Arabidopsis thaliana OX=3702 GN=CHX18 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-18
Identity = 49/67 (73.13%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          MATN+T   ACPA MKATSNGVFQGDNP+++ALPLAILQI +V++LTR+L+ LLRP+RQP
Sbjct: 1  MATNST--KACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQP 60

Query: 61 RVIAEIV 68
          RVIAE++
Sbjct: 61 RVIAEVI 65

[Close]

BLAST of CmoCh16G006180 vs. ExPASy Swiss-Prot
Match: Q9SUQ7 (Cation/H(+) antiporter 17 OS=Arabidopsis thaliana OX=3702 GN=CHX17 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-18
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          M TN T    CP  MKATSNGVFQG+NPL +ALPL ILQIC+V+LLTRLL+ LLRP+RQP
Sbjct: 1  MGTNGT---TCPGPMKATSNGVFQGENPLEHALPLLILQICIVLLLTRLLAFLLRPLRQP 60

Query: 61 RVIAEIV 68
          RVIAEIV
Sbjct: 61 RVIAEIV 64

[Close]

BLAST of CmoCh16G006180 vs. ExPASy Swiss-Prot
Match: Q9LUN4 (Cation/H(+) antiporter 19 OS=Arabidopsis thaliana OX=3702 GN=CHX19 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-14
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 4  NATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVI 63
          +  V+G CP  MKATSNG FQ ++PL++ALPL ILQI LVV+ TRLL+  L+P++QPRVI
Sbjct: 3  STNVTGQCPGPMKATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVI 62

Query: 64 AEIV 68
          AEI+
Sbjct: 63 AEII 66

[Close]

BLAST of CmoCh16G006180 vs. ExPASy Swiss-Prot
Match: Q1HDT3 (Cation/H(+) antiporter 16 OS=Arabidopsis thaliana OX=3702 GN=CHX16 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-13
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 11 CP---ASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVIAEIV 68
          CP   A MK TSNGVF G++PL++A PL ILQICLVV +TR L+ LLRP+RQPRV+AEI+
Sbjct: 14 CPKNVAMMKTTSNGVFDGESPLDFAFPLVILQICLVVAVTRSLAFLLRPMRQPRVVAEII 73

[Close]

BLAST of CmoCh16G006180 vs. ExPASy Swiss-Prot
Match: Q9M353 (Cation/H(+) antiporter 20 OS=Arabidopsis thaliana OX=3702 GN=CHX20 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.4e-11
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 14 SMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVIAEIV 68
          S+K +SNGV+QGDNPLN+A PL I+Q  L++ ++R L++L +P+RQP+VIAEIV
Sbjct: 7  SVKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIV 60

[Close]

BLAST of CmoCh16G006180 vs. ExPASy TrEMBL
Match: A0A6J1ETV0 (cation/H(+) antiporter 18-like OS=Cucurbita moschata OX=3662 GN=LOC111437504 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-25
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP
Sbjct: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60

Query: 61 RVIAEIV 68
          RVIAEIV
Sbjct: 61 RVIAEIV 67

[Close]

BLAST of CmoCh16G006180 vs. ExPASy TrEMBL
Match: A0A6J1JB49 (cation/H(+) antiporter 18-like OS=Cucurbita maxima OX=3661 GN=LOC111483400 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-24
Identity = 65/67 (97.01%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          MATNATV+GACPA MKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP
Sbjct: 1  MATNATVTGACPAVMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60

Query: 61 RVIAEIV 68
          RVIAEIV
Sbjct: 61 RVIAEIV 67

[Close]

BLAST of CmoCh16G006180 vs. ExPASy TrEMBL
Match: A0A6J1FP52 (cation/H(+) antiporter 18-like OS=Cucurbita moschata OX=3662 GN=LOC111447230 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 61/67 (91.04%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          MATNAT +G CPA MKATSNGVFQGDNPLNYALPLAILQICLVVLLTR LS LLRPIRQP
Sbjct: 1  MATNATATGVCPAPMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRALSFLLRPIRQP 60

Query: 61 RVIAEIV 68
          RVIAEIV
Sbjct: 61 RVIAEIV 67

[Close]

BLAST of CmoCh16G006180 vs. ExPASy TrEMBL
Match: M5WXM5 (Na_H_Exchanger domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_5G111700 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          MATNATV+ ACPA MKATSNGVFQGDNPL++ALPLAILQICLVV LTR+L+ LLRP+RQP
Sbjct: 1  MATNATVASACPAPMKATSNGVFQGDNPLDFALPLAILQICLVVALTRILAYLLRPLRQP 60

Query: 61 RVIAEIV 68
          RVIAEIV
Sbjct: 61 RVIAEIV 67

[Close]

BLAST of CmoCh16G006180 vs. ExPASy TrEMBL
Match: A0A6P5T1Y6 (cation/H(+) antiporter 18-like OS=Prunus avium OX=42229 GN=LOC110762207 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          MATNATV+ ACPA MKATSNGVFQGDNPL++ALPLAILQICLVV LTR+L+ LLRP+RQP
Sbjct: 1  MATNATVASACPAPMKATSNGVFQGDNPLDFALPLAILQICLVVALTRILAYLLRPLRQP 60

Query: 61 RVIAEIV 68
          RVIAEIV
Sbjct: 61 RVIAEIV 67

[Close]

BLAST of CmoCh16G006180 vs. TAIR 10
Match: AT5G41610.1 (cation/H+ exchanger 18 )

HSP 1 Score: 93.2 bits (230), Expect = 9.0e-20
Identity = 49/67 (73.13%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          MATN+T   ACPA MKATSNGVFQGDNP+++ALPLAILQI +V++LTR+L+ LLRP+RQP
Sbjct: 1  MATNST--KACPAPMKATSNGVFQGDNPIDFALPLAILQIVIVIVLTRVLAYLLRPLRQP 60

Query: 61 RVIAEIV 68
          RVIAE++
Sbjct: 61 RVIAEVI 65

[Close]

BLAST of CmoCh16G006180 vs. TAIR 10
Match: AT4G23700.1 (cation/H+ exchanger 17 )

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-19
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MATNATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQP 60
          M TN T    CP  MKATSNGVFQG+NPL +ALPL ILQIC+V+LLTRLL+ LLRP+RQP
Sbjct: 1  MGTNGT---TCPGPMKATSNGVFQGENPLEHALPLLILQICIVLLLTRLLAFLLRPLRQP 60

Query: 61 RVIAEIV 68
          RVIAEIV
Sbjct: 61 RVIAEIV 64

[Close]

BLAST of CmoCh16G006180 vs. TAIR 10
Match: AT3G17630.1 (cation/H+ exchanger 19 )

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-15
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 4  NATVSGACPASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVI 63
          +  V+G CP  MKATSNG FQ ++PL++ALPL ILQI LVV+ TRLL+  L+P++QPRVI
Sbjct: 3  STNVTGQCPGPMKATSNGAFQNESPLDFALPLIILQIVLVVVFTRLLAYFLKPLKQPRVI 62

Query: 64 AEIV 68
          AEI+
Sbjct: 63 AEII 66

[Close]

BLAST of CmoCh16G006180 vs. TAIR 10
Match: AT1G64170.1 (cation/H+ exchanger 16 )

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-14
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 11 CP---ASMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVIAEIV 68
          CP   A MK TSNGVF G++PL++A PL ILQICLVV +TR L+ LLRP+RQPRV+AEI+
Sbjct: 14 CPKNVAMMKTTSNGVFDGESPLDFAFPLVILQICLVVAVTRSLAFLLRPMRQPRVVAEII 73

[Close]

BLAST of CmoCh16G006180 vs. TAIR 10
Match: AT3G53720.1 (cation/H+ exchanger 20 )

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-12
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 14 SMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVIAEIV 68
          S+K +SNGV+QGDNPLN+A PL I+Q  L++ ++R L++L +P+RQP+VIAEIV
Sbjct: 7  SVKTSSNGVWQGDNPLNFAFPLLIVQTALIIAVSRFLAVLFKPLRQPKVIAEIV 60

The following BLAST results are available for this feature:

BLAST of CmoCh16G006180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFR9	1.3e-18	73.13	Cation/H(+) antiporter 18 OS=Arabidopsis thaliana OX=3702 GN=CHX18 PE=2 SV=1	[more]
Q9SUQ7	3.7e-18	74.63	Cation/H(+) antiporter 17 OS=Arabidopsis thaliana OX=3702 GN=CHX17 PE=1 SV=1	[more]
Q9LUN4	1.9e-14	62.50	Cation/H(+) antiporter 19 OS=Arabidopsis thaliana OX=3702 GN=CHX19 PE=2 SV=1	[more]
Q1HDT3	2.1e-13	66.67	Cation/H(+) antiporter 16 OS=Arabidopsis thaliana OX=3702 GN=CHX16 PE=2 SV=1	[more]
Q9M353	4.4e-11	59.26	Cation/H(+) antiporter 20 OS=Arabidopsis thaliana OX=3702 GN=CHX20 PE=2 SV=1	[more]

BLAST of CmoCh16G006180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETV0	4.2e-25	100.00	cation/H(+) antiporter 18-like OS=Cucurbita moschata OX=3662 GN=LOC111437504 PE=...	[more]
A0A6J1JB49	4.7e-24	97.01	cation/H(+) antiporter 18-like OS=Cucurbita maxima OX=3661 GN=LOC111483400 PE=4 ...	[more]
A0A6J1FP52	3.3e-22	91.04	cation/H(+) antiporter 18-like OS=Cucurbita moschata OX=3662 GN=LOC111447230 PE=...	[more]
M5WXM5	1.8e-20	85.07	Na_H_Exchanger domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_5G11...	[more]
A0A6P5T1Y6	1.8e-20	85.07	cation/H(+) antiporter 18-like OS=Prunus avium OX=42229 GN=LOC110762207 PE=4 SV=...	[more]

BLAST of CmoCh16G006180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41610.1	9.0e-20	73.13	cation/H+ exchanger 18	[more]
AT4G23700.1	2.6e-19	74.63	cation/H+ exchanger 17	[more]
AT3G17630.1	1.3e-15	62.50	cation/H+ exchanger 19	[more]
AT1G64170.1	1.5e-14	66.67	cation/H+ exchanger 16	[more]
AT3G53720.1	3.1e-12	59.26	cation/H+ exchanger 20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32468	CATION/H + ANTIPORTER	coord: 10..67
None	No IPR available	PANTHER	PTHR32468:SF144	CATION/H(+) ANTIPORTER 17	coord: 10..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G006180.1	CmoCh16G006180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0006885	regulation of pH
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015299	solute:proton antiporter activity