CmoCh16G003530 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh16G003530
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionhomeobox protein HAT3.1 isoform X2
LocationCmo_Chr16: 1638212 .. 1638431 (+)
RNA-Seq ExpressionCmoCh16G003530
SyntenyCmoCh16G003530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCAATATGATTATTAGCGGCGGTTGCGGAAGGCAGACGGTGCGCAGAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAAAAGAGAAAGAACAAGAAGAACACCCACCACCATCGCCAAAATTCTTACACTTTTCTTCCAAAGCTCCATAAATAAACATCTCCACCACCAACTAGATCCGTAG

mRNA sequence

ATGCGCAATATGATTATTAGCGGCGGCAGACGGTGCGCAGAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAAAAGAGAAAGAACAAGAAGAACACCCACCACCATCGCCAAAATTCTTACACTTTTCTTCCAAAGCTCCATAAATAAACATCTCCACCACCAACTAGATCCGTAG

Coding sequence (CDS)

ATGCGCAATATGATTATTAGCGGCGGCAGACGGTGCGCAGAGAGTAACGGTGGCCCAGATTTGGAGGACTCTGAGACAAAGCCGCTTTATTCTCTCTTCGCGCTGAAAAGAGAAAGAACAAGAAGAACACCCACCACCATCGCCAAAATTCTTACACTTTTCTTCCAAAGCTCCATAAATAAACATCTCCACCACCAACTAGATCCGTAG

Protein sequence

MRNMIISGGRRCAESNGGPDLEDSETKPLYSLFALKRERTRRTPTTIAKILTLFFQSSINKHLHHQLDP
Homology
[Close]
BLAST of CmoCh16G003530 vs. ExPASy TrEMBL
Match: A0A0A0LBT3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 2  RNMIISGG----------RRCAESNGGPDLEDSETKPLYSLFALK-RERTRRTPTTIAKI 61
          RN+I SGG           + A+SNGGPDLEDSETKPLYSLF L+ + RT +  T IAK 
Sbjct: 14 RNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQTTIIAKF 73

[Close]
BLAST of CmoCh16G003530 vs. ExPASy TrEMBL
Match: A0A6J1D7M5 (homeobox protein HAT3.1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017765 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 6  ISGGRRCAESNGGPDLEDSETKPLYSLFALK-RERTRRTPTTIAKIL 52
          +  GR  A  NGGPDLEDSETKPLYSLFAL+ R  T  T  TI KIL
Sbjct: 40 VKAGRNAAACNGGPDLEDSETKPLYSLFALRTRTATTTTRRTIDKIL 86

[Close]
BLAST of CmoCh16G003530 vs. NCBI nr
Match: KGN57486.1 (hypothetical protein Csa_010932 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 0 

Query: 2  RNMIISGG----------RRCAESNGGPDLEDSETKPLYSLFALK-RERTRRTPTTIAKI 61
          RN+I SGG           + A+SNGGPDLEDSETKPLYSLF L+ + RT +  T IAK 
Sbjct: 14 RNVIRSGGSGRQTVRVKASQNAQSNGGPDLEDSETKPLYSLFPLRTQRRTEQQTTIIAKF 73

[Close]
BLAST of CmoCh16G003530 vs. NCBI nr
Match: XP_022149327.1 (homeobox protein HAT3.1 isoform X2 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0 

Query: 6  ISGGRRCAESNGGPDLEDSETKPLYSLFALK-RERTRRTPTTIAKIL 52
          +  GR  A  NGGPDLEDSETKPLYSLFAL+ R  T  T  TI KIL
Sbjct: 40 VKAGRNAAACNGGPDLEDSETKPLYSLFALRTRTATTTTRRTIDKIL 86

The following BLAST results are available for this feature:
BLAST of CmoCh16G003530 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh16G003530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBT31.3e-0754.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198500 PE=4 SV=1[more]
A0A6J1D7M51.6e-0565.96homeobox protein HAT3.1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC11101776... [more]
BLAST of CmoCh16G003530 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57486.12.7e-0754.29hypothetical protein Csa_010932 [Cucumis sativus][more]
XP_022149327.13.4e-0565.96homeobox protein HAT3.1 isoform X2 [Momordica charantia][more]
BLAST of CmoCh16G003530 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003530.1CmoCh16G003530.1mRNA