CmoCh15G009750 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G009750
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr15: 5133325 .. 5133642 (-)
RNA-Seq ExpressionCmoCh15G009750
SyntenyCmoCh15G009750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAAGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACAACGCAGTCGGAGGCGGGATCGTGGGTGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGGAGAAGGAGGAGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

mRNA sequence

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAAGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACAACGCAGTCGGAGGCGGGATCGTGGGTGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGGAGAAGGAGGAGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

Coding sequence (CDS)

ATGATGGAGGCAGGCGTCGAGGCAGTCCTTGTGGAAGATGTGGCGGCAAGGAAGGCGGCGGACGAGGTTGCCGGGGGAGAGAGGGGAGAGACAGACAACGCAGTCGGAGGCGGGATCGTGGGTGTGAGGGTAGCGGTGAGAGAGGAGGCGATTGAGGTGAAGGTGGTGGGGGAGAGGGGAAATATCGGGGAGGCAGTGGTCGGGAGAAGGAGGAGCGGGGGAGAGAAAGGAGCGGAGAAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGAGATTGGGAGGAGAAGTCGTTGAGTTGGCTCTGTAA

Protein sequence

MMEAGVEAVLVEDVAARKAADEVAGGERGETDNAVGGGIVGVRVAVREEAIEVKVVGERGNIGEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL
Homology
BLAST of CmoCh15G009750 vs. ExPASy TrEMBL
Match: A0A0A0KUZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.3e-17
Identity = 63/107 (58.88%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MMEAGVEAVLVEDVAARKAADEVAGGERGETDNAVGG--GIVGVRVAVREEAIEVKVVGE 60
           M++  VEAV +E+VAA + ADEV G ERGETD+A+GG  G+VGV V V E+AIE+++VG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIGEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL 106
           RG I   V G    G E GAE+ EEIG+EREEEERER+ GEV+EL +
Sbjct: 91  RGEIRTVVGG----GEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

BLAST of CmoCh15G009750 vs. NCBI nr
Match: KAG6579228.1 (hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.4 bits (459), Expect = 4.0e-42
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MMEAGVEAVLVEDVAARKAADEVAGGERGETDNAVGGGIVGVRVAVREEAIEVKVVGERG 60
           MMEAGVEAVLVEDVAARKAADEVAGGERGETD+AVGGGIVGVRVAVREEAIEVKVVGERG
Sbjct: 1   MMEAGVEAVLVEDVAARKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKVVGERG 60

Query: 61  NIGEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL 106
           NIGEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL
Sbjct: 61  NIGEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL 105

BLAST of CmoCh15G009750 vs. NCBI nr
Match: KGN51526.1 (hypothetical protein Csa_008164 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 63/107 (58.88%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MMEAGVEAVLVEDVAARKAADEVAGGERGETDNAVGG--GIVGVRVAVREEAIEVKVVGE 60
           M++  VEAV +E+VAA + ADEV G ERGETD+A+GG  G+VGV V V E+AIE+++VG+
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGVGVGEKAIEMEMVGK 90

Query: 61  RGNIGEAVVGRRRSGGEKGAEKGEEIGEEREEEERERLGGEVVELAL 106
           RG I   V G    G E GAE+ EEIG+EREEEERER+ GEV+EL +
Sbjct: 91  RGEIRTVVGG----GEEGGAEEREEIGKEREEEERERMVGEVIELCV 133

BLAST of CmoCh15G009750 vs. NCBI nr
Match: KAG6601827.1 (hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-14
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 1  MMEAGVEAVLVEDVAARKAADEVAGGERGETDNAVGGGIVGVRVAVREEAIEVKVVGERG 60
          MM+  +EAVLVEDV AR+ AD V  GE  E D+ VGGG +GV VAV E+AIE+K++ ERG
Sbjct: 1  MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGGGIGV-VAVGEKAIEMKMLVERG 60

Query: 61 NIGEAVVGRRRSGG-EKGAEKGEEIGEEREEEERE 95
          NIG   +GRR  GG E+ AE+GEEIGEEREEEERE
Sbjct: 61 NIG---IGRRSGGGEERTAEEGEEIGEEREEEERE 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUZ66.3e-1758.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6579228.14.0e-4299.05hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN51526.11.3e-1658.88hypothetical protein Csa_008164 [Cucumis sativus][more]
KAG6601827.12.7e-1464.21hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G009750.1CmoCh15G009750.1mRNA