CmoCh15G001790 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G001790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-H2 finger protein ATL74-like
Location	Cmo_Chr15: 820052 .. 821053 (+)
RNA-Seq Expression	CmoCh15G001790
Synteny	CmoCh15G001790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGGTATTGGTTTTTTGAGTGGCCACTGACTTGTAAGATGCTTTGAAACTTCGTTGGAATACTAAGAATTGTTTGATTTAACTCTTAAAGGATCATTGTTCATCGTTCTTTCTAGTTGAAGGCAGATCAGGAACAGAGAACACAAGGGTTTGATTGGCACATGAGTGATATGAACTTTCTATTTTCAGTCTCTCTTGTTGTTAGATTCGCTCATCAAAGAACTAAGGGGTTTTGAATTATCAAGTTTCACTGCGGAATTTCATCAAACAGGTTGAAGATCTAAAGAAAATTACCTTTGGCAGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCTTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

mRNA sequence

ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGTTGAAGGCAGATCAGGAACAGAGAACACAAGGGTTTGATTGGCACATGAGTGATATGAACTTTCTATTTTCAGTCTCTCTTGTTGTTAGATTCGCTCATCAAAGAACTAAGGGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCTTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

Coding sequence (CDS)

ATGGGAACTAGAGCTTTTTGCAGCCATGGATACTATTGTTTGGCATGTTGTTGGTTGAAGGCAGATCAGGAACAGAGAACACAAGGGTTTGATTGGCACATGAGTGATATGAACTTTCTATTTTCAGTCTCTCTTGTTGTTAGATTCGCTCATCAAAGAACTAAGGGCATCAGTCCTGCTGTTGTTTTGAAGTTGTTTGCTGCTCCTATGGCGATGGTGTCCGATCACCACCGTCCCCGTCCCCACCGCCTCCTCCTCGACGCCAACACGACGGAGGCGCCGTCGAATGGAAGCAGAACGCGAAATTCGTATACCAACGAAGCCAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCACTGATTTGCGCTCTAGGATTGAACTCAATCGTCCGGTGCGCCTTCCGCTGCAGCCGACGATTCTCCTTCGAGACAGGCGGCGGCACAGCCTCGCGCCTCGCCGCAACAGGGCTGAAGAAAAGCGCATTACGCAAACTTCCGGTCACCGTATACGGGTCGGAGTCGGGTCTAGGGATTCGAGAAACGGATTGCCCTATCTGCCTGGGAGATTTCATCGCCGGAGAGAAAATCAAAGTGCTTCCAAAATGTAACCACGGATTTCACGTCCGATGTATCGATACCTGGTTGGCTTCCCACTCGTCGTGTCCGACGTGTCGTCAATCGCTGTTCGAACAACAGTCAGCTTCTGAATCAACGGAAGCCGACGCCGGAAACCGACCCGCCGGAAATTCATCAGCTAGCGGCCAAGGTGAGATCTCGATACCCATAGATCAAATCAGCTGA

Protein sequence

MGTRAFCSHGYYCLACCWLKADQEQRTQGFDWHMSDMNFLFSVSLVVRFAHQRTKGISPAVVLKLFAAPMAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISIPIDQIS

Homology

[Close]

BLAST of CmoCh15G001790 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-42
Identity = 94/163 (57.67%), Postives = 113/163 (69.33%), Query Frame = 0


Query: 83  RLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCAFRCS 142
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC  R +
Sbjct: 3   RLLLEPQ-ANAPANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 143 RRFSFETGGGTASR--------LAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGD 202
           RRF+ +     AS          AATGLKK AL+++PV +YGS   + ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 203 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQ 238
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSL  +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of CmoCh15G001790 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.1e-41
Identity = 82/138 (59.42%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 106 NEANFDTNMVIILAALLCALICALGLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKS 165
           N A+ DT+MVIILAALLCALICALG+NS++RC  RC+RRF+        +   A G+KK 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 166 ALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSS 225
           AL+ +PV  Y  E  L ++ T+C ICLGDF+ GE ++VLPKCNHGFHV+CIDTWL SHSS
Sbjct: 93  ALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSS 152

Query: 226 CPTCRQSLFEQQSASEST 244
           CPTCRQSL E Q+ +  +
Sbjct: 153 CPTCRQSLLEHQTPANGS 168

[Close]

BLAST of CmoCh15G001790 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.1e-41
Identity = 88/154 (57.14%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 82  HRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCAFRC 141
           HRLLL+++     ++GS   + YT + NFD NMVIILAALLCALI ALGLNSI+RCA RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 142 SRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKI 201
               S     GT +  A  GLKK  L+K PV  YGS   + I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 202 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFE 236
           +VLP CNH FH+ CIDTWL SHSSCP CR SL E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of CmoCh15G001790 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-36
Identity = 83/182 (45.60%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 87  DANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCAFRCSRRFS 146
           D + T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCA RCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 147 FETGGGT-ASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLP 206
            E GG     RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 207 KCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISI 266
            C+HGFHVRCID WL+SHSSCPTCR  L +    +    AD     + NS+   Q  I +
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ----TCEKIADCSQTSSLNSTQPPQDSIIL 206

Query: 267 PI 268
            I
Sbjct: 216 QI 206

[Close]

BLAST of CmoCh15G001790 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.2e-30
Identity = 70/149 (46.98%), Postives = 96/149 (64.43%), Query Frame = 0


Query: 105 TNEANFDTNMVIILAALLCALICALGLNSIVRCAFRCSRRFSFE---TGGGTASRLAATG 164
           T+E N   N++++L+ L+C +IC LGL+ I+RCAFR S RF      +   T    +  G
Sbjct: 49  THENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSNKG 108

Query: 165 LKKSALRKLPVTVYGSESGL-GIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWL 224
           +KK ALR  PV  Y  E  L GI E +C ICL DF++GE++++LPKCNHGFHVRCID WL
Sbjct: 109 IKKKALRMFPVVSYSREMNLPGIGE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWL 168

Query: 225 ASHSSCPTCRQSLFE--QQSASESTEADA 248
             H +CP CR  L E  Q+   + ++AD+
Sbjct: 169 QHHLTCPKCRHCLVETCQKILGDFSQADS 196

[Close]

BLAST of CmoCh15G001790 vs. ExPASy TrEMBL
Match: A0A6J1FF16 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.4e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 70  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 129
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 130 GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 189
           GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 190 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 249
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 250 RPAGNSSASGQGEISIPIDQIS 272
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of CmoCh15G001790 vs. ExPASy TrEMBL
Match: A0A6J1JVF4 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.6e-107
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 70  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 129
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 130 GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 189
           GLNSIVRCA RCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 190 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 249
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 250 RPAGNSSASGQGEISIPIDQIS 272
           RPAGN SASGQGEISIPIDQIS
Sbjct: 181 RPAGNPSASGQGEISIPIDQIS 202

[Close]

BLAST of CmoCh15G001790 vs. ExPASy TrEMBL
Match: A0A5D3BXT6 (RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001810 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 4.3e-94
Identity = 176/200 (88.00%), Postives = 187/200 (93.50%), Query Frame = 0


Query: 72  MVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGL 131
           M S+HHRPR HRLLLDA+TT APSNGSRTRNSY NEANFDTNMVIILAALLCALICALGL
Sbjct: 1   MESNHHRPRSHRLLLDADTTAAPSNGSRTRNSYNNEANFDTNMVIILAALLCALICALGL 60

Query: 132 NSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPIC 191
           NSIVRCA RCSRRF+FETGGGTASRL A+GLKKSALR++PV VYGSE+GL IRETDCPIC
Sbjct: 61  NSIVRCALRCSRRFAFETGGGTASRLTASGLKKSALRQIPVAVYGSETGLEIRETDCPIC 120

Query: 192 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRP 251
           LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGNRP
Sbjct: 121 LGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLVEQQSVSESAGAEAGNRP 180

Query: 252 AGNSSASGQGEISIPIDQIS 272
           AGNSSASGQGEISI +D+I+
Sbjct: 181 AGNSSASGQGEISITVDEIT 200

[Close]

BLAST of CmoCh15G001790 vs. ExPASy TrEMBL
Match: A0A0A0KAH2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.6e-91
Identity = 172/202 (85.15%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 70  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 129
           M M S+HHRPRP RLLLD +TT  PSNGSRTRNSY NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MRMESNHHRPRPPRLLLDPDTTAPPSNGSRTRNSYNNEANFDTNMVIILAALLCALICAL 60

Query: 130 GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 189
           GLNSIVRCA RCSRRF+FETGGGTASRL ATGLKKSALR++PV VYGSE+GL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETGGGTASRLTATGLKKSALRQIPVAVYGSETGLEIRETDCP 120

Query: 190 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 249
           ICLGDF+AGEKIK+LPKCNHGFHVRCIDTWLASHSSCPTCRQSL EQQS SES   +AGN
Sbjct: 121 ICLGDFMAGEKIKILPKCNHGFHVRCIDTWLASHSSCPTCRQSLLEQQSVSESAVTEAGN 180

Query: 250 RPAGNSSASGQGEISIPIDQIS 272
           R AGNSSASGQGEISI +D I+
Sbjct: 181 RGAGNSSASGQGEISITVDGIT 202

[Close]

BLAST of CmoCh15G001790 vs. ExPASy TrEMBL
Match: A0A6J1BZW4 (RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 1.0e-87
Identity = 165/192 (85.94%), Postives = 175/192 (91.15%), Query Frame = 0


Query: 70  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 129
           MAM SDHHR RPHR LLD + T  PSNG+RTR+SY+NEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMASDHHRHRPHRFLLDGDATAPPSNGNRTRSSYSNEANFDTNMVIILAALLCALICAL 60

Query: 130 GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 189
           GLNSIVRCA RCSRRF+FET GGT++RLAATGLKKSALR++PV VYGSESGL IRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFAFETAGGTSTRLAATGLKKSALRQIPVAVYGSESGLEIRETDCP 120

Query: 190 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 249
           ICLGDFIAGEKIKVLPKCNH FHVRCIDTWLASHSSCPTCRQSL EQQS SES  A+AGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHEFHVRCIDTWLASHSSCPTCRQSLLEQQSCSESAVAEAGN 180

Query: 250 RPAGNSSASGQG 262
           RPAGNSSA GQG
Sbjct: 181 RPAGNSSAGGQG 192

[Close]

BLAST of CmoCh15G001790 vs. NCBI nr
Match: KAG7016045.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 455.7 bits (1171), Expect = 2.8e-124
Identity = 235/271 (86.72%), Postives = 239/271 (88.19%), Query Frame = 0


Query: 1   MGTRAFCSHGYYCLACCWLKADQEQRTQGFDWHMSDMNFLFSVSLVVRFAHQRTKGISPA 60
           MGTRAFCSHGYYCLACCW++ D ++ T G                           ISPA
Sbjct: 1   MGTRAFCSHGYYCLACCWVE-DLKKITFG--------------------------SISPA 60

Query: 61  VVLKLFAAPMAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAA 120
           VVLKLFAAPMAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAA
Sbjct: 61  VVLKLFAAPMAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAA 120

Query: 121 LLCALICALGLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESG 180
           LLCALICALGLNSIVRCA RCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESG
Sbjct: 121 LLCALICALGLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESG 180

Query: 181 LGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSAS 240
           LGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSAS
Sbjct: 181 LGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSAS 240

Query: 241 ESTEADAGNRPAGNSSASGQGEISIPIDQIS 272
           ESTEADAGNRPAGNSSASGQGEISIPIDQIS
Sbjct: 241 ESTEADAGNRPAGNSSASGQGEISIPIDQIS 244

[Close]

BLAST of CmoCh15G001790 vs. NCBI nr
Match: XP_022938777.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 402.5 bits (1033), Expect = 2.8e-108
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 70  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 129
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 130 GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 189
           GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 190 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 249
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 250 RPAGNSSASGQGEISIPIDQIS 272
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of CmoCh15G001790 vs. NCBI nr
Match: XP_023550807.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 400.2 bits (1027), Expect = 1.4e-107
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 70  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 129
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 130 GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 189
           GLNSIVRCA RCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 190 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 249
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 250 RPAGNSSASGQGEISIPIDQIS 272
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of CmoCh15G001790 vs. NCBI nr
Match: KAG6578482.1 (RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.3 bits (1022), Expect = 5.4e-107
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 70  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 129
           MAMVSDHHRP PHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPHPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 130 GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 189
           GLNSIVRCA RCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 190 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 249
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 250 RPAGNSSASGQGEISIPIDQIS 272
           RPAGNSSASGQGEISIPIDQIS
Sbjct: 181 RPAGNSSASGQGEISIPIDQIS 202

[Close]

BLAST of CmoCh15G001790 vs. NCBI nr
Match: XP_022993116.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 398.3 bits (1022), Expect = 5.4e-107
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 70  MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 129
           MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL
Sbjct: 1   MAMVSDHHRPRPHRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICAL 60

Query: 130 GLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 189
           GLNSIVRCA RCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP
Sbjct: 61  GLNSIVRCALRCSRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCP 120

Query: 190 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 249
           ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN
Sbjct: 121 ICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGN 180

Query: 250 RPAGNSSASGQGEISIPIDQIS 272
           RPAGN SASGQGEISIPIDQIS
Sbjct: 181 RPAGNPSASGQGEISIPIDQIS 202

[Close]

BLAST of CmoCh15G001790 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-43
Identity = 94/163 (57.67%), Postives = 113/163 (69.33%), Query Frame = 0


Query: 83  RLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCAFRCS 142
           RLLL+     AP+N +       N+  FDTNMVIILAALLCALICAL LNS +RC  R +
Sbjct: 3   RLLLEPQ-ANAPANANPKPKGGINDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 143 RRFSFETGGGTASR--------LAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGD 202
           RRF+ +     AS          AATGLKK AL+++PV +YGS   + ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 203 FIAGEKIKVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQ 238
           F  GEK++VLPKCNHGFHVRCIDTWL S SSCPTCRQSL  +Q
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQ 163

[Close]

BLAST of CmoCh15G001790 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-42
Identity = 82/138 (59.42%), Postives = 103/138 (74.64%), Query Frame = 0


Query: 106 NEANFDTNMVIILAALLCALICALGLNSIVRCAFRCSRRFSFETGGGTASRLAATGLKKS 165
           N A+ DT+MVIILAALLCALICALG+NS++RC  RC+RRF+        +   A G+KK 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 166 ALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWLASHSS 225
           AL+ +PV  Y  E  L ++ T+C ICLGDF+ GE ++VLPKCNHGFHV+CIDTWL SHSS
Sbjct: 93  ALKVIPVDSYSPE--LKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSS 152

Query: 226 CPTCRQSLFEQQSASEST 244
           CPTCRQSL E Q+ +  +
Sbjct: 153 CPTCRQSLLEHQTPANGS 168

[Close]

BLAST of CmoCh15G001790 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-42
Identity = 88/154 (57.14%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 82  HRLLLDANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCAFRC 141
           HRLLL+++     ++GS   + YT + NFD NMVIILAALLCALI ALGLNSI+RCA RC
Sbjct: 2   HRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRC 61

Query: 142 SRRFSFETGGGTASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKI 201
               S     GT +  A  GLKK  L+K PV  YGS   + I  T+C ICLG+F  GE++
Sbjct: 62  GFGLSSSAAAGTVADRA--GLKKRELKKFPVAEYGS-GEVKIAATECAICLGEFADGERV 121

Query: 202 KVLPKCNHGFHVRCIDTWLASHSSCPTCRQSLFE 236
           +VLP CNH FH+ CIDTWL SHSSCP CR SL E
Sbjct: 122 RVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]

BLAST of CmoCh15G001790 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 153.3 bits (386), Expect = 2.8e-37
Identity = 83/182 (45.60%), Postives = 110/182 (60.44%), Query Frame = 0


Query: 87  DANTTEAPSNGSRTRNSYTNEANFDTNMVIILAALLCALICALGLNSIVRCAFRCSRRFS 146
           D + T APS        Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCA RCS    
Sbjct: 36  DQSPTPAPS-------PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVP 95

Query: 147 FETGGGT-ASRLAATGLKKSALRKLPVTVYGSESGLGIRETDCPICLGDFIAGEKIKVLP 206
            E GG     RL  TG+K+ AL+      Y +E  L   +T+C ICL +F+A E++K+LP
Sbjct: 96  SEAGGDNYPVRLTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLP 155

Query: 207 KCNHGFHVRCIDTWLASHSSCPTCRQSLFEQQSASESTEADAGNRPAGNSSASGQGEISI 266
            C+HGFHVRCID WL+SHSSCPTCR  L +    +    AD     + NS+   Q  I +
Sbjct: 156 TCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ----TCEKIADCSQTSSLNSTQPPQDSIIL 206

Query: 267 PI 268
            I
Sbjct: 216 QI 206

[Close]

BLAST of CmoCh15G001790 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 132.5 bits (332), Expect = 5.1e-31
Identity = 70/149 (46.98%), Postives = 96/149 (64.43%), Query Frame = 0


Query: 105 TNEANFDTNMVIILAALLCALICALGLNSIVRCAFRCSRRFSFE---TGGGTASRLAATG 164
           T+E N   N++++L+ L+C +IC LGL+ I+RCAFR S RF      +   T    +  G
Sbjct: 49  THENNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSNKG 108

Query: 165 LKKSALRKLPVTVYGSESGL-GIRETDCPICLGDFIAGEKIKVLPKCNHGFHVRCIDTWL 224
           +KK ALR  PV  Y  E  L GI E +C ICL DF++GE++++LPKCNHGFHVRCID WL
Sbjct: 109 IKKKALRMFPVVSYSREMNLPGIGE-ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWL 168

Query: 225 ASHSSCPTCRQSLFE--QQSASESTEADA 248
             H +CP CR  L E  Q+   + ++AD+
Sbjct: 169 QHHLTCPKCRHCLVETCQKILGDFSQADS 196

The following BLAST results are available for this feature:

BLAST of CmoCh15G001790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SG96	1.7e-42	57.67	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9FLC6	3.1e-41	59.42	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	4.1e-41	57.14	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q6NQG7	3.9e-36	45.60	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
Q6NML0	7.2e-30	46.98	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]

BLAST of CmoCh15G001790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FF16	1.4e-108	100.00	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111444892 ...	[more]
A0A6J1JVF4	2.6e-107	99.01	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111489233 PE...	[more]
A0A5D3BXT6	4.3e-94	88.00	RING-H2 finger protein ATL72 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0KAH2	2.6e-91	85.15	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014550 P...	[more]
A0A6J1BZW4	1.0e-87	85.94	RING-H2 finger protein ATL74 OS=Momordica charantia OX=3673 GN=LOC111006761 PE=4...	[more]

BLAST of CmoCh15G001790 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016045.1	2.8e-124	86.72	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022938777.1	2.8e-108	100.00	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]
XP_023550807.1	1.4e-107	99.50	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo] >XP_023550808.1 R...	[more]
KAG6578482.1	5.4e-107	99.01	RING-H2 finger protein ATL72, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022993116.1	5.4e-107	99.01	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]

BLAST of CmoCh15G001790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10910.1	1.2e-43	57.67	RING/U-box superfamily protein	[more]
AT5G05280.1	2.2e-42	59.42	RING/U-box superfamily protein	[more]
AT5G01880.1	2.9e-42	57.14	RING/U-box superfamily protein	[more]
AT1G49230.1	2.8e-37	45.60	RING/U-box superfamily protein	[more]
AT1G49210.1	5.1e-31	46.98	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 188..229 e-value: 1.0E-7 score: 41.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 187..230 e-value: 3.7E-13 score: 49.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 188..230 score: 12.1057
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 152..235 e-value: 2.4E-22 score: 80.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..271
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 82..252
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 82..252
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 187..230 e-value: 2.35335E-16 score: 69.2529
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 182..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G001790.1	CmoCh15G001790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane