CmoCh15G000710 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G000710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr15: 388401 .. 388700 (+)
RNA-Seq ExpressionCmoCh15G000710
SyntenyCmoCh15G000710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCAAGGTGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGCCCTCTCCATGGGGAAGGTATGGCGTCGTGTTCAAGTCATGTTGCATTTATGGTTCATCGCCAGGAGAGGGCTGCCATGGCTCCATCGAACCAAAGAGTTGTTCATGATCAAGCCATGAATAATGTCCAGGAGGCCAACTTTAGGAACCCTCAAGGCGGTGGGGGTTTCGCCGACGAACATATCGATCGGAAGGCTGCCATGTACATATCATCAGTCCAAGAACGCTTTAGACTTGAGGGCTTAATCAATTGA

mRNA sequence

ATGGATGCAAGGTGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGCCCTCTCCATGGGGAAGGTATGGCGTCGTGTTCAAGTCATGTTGCATTTATGGTTCATCGCCAGGAGAGGGCTGCCATGGCTCCATCGAACCAAAGAGTTGTTCATGATCAAGCCATGAATAATGTCCAGGAGGCCAACTTTAGGAACCCTCAAGGCGGTGGGGGTTTCGCCGACGAACATATCGATCGGAAGGCTGCCATGTACATATCATCAGTCCAAGAACGCTTTAGACTTGAGGGCTTAATCAATTGA

Coding sequence (CDS)

ATGGATGCAAGGTGTAGAGCAAGAGGCCTTGTGAAGGGCATGTTGGGCCCTCTCCATGGGGAAGGTATGGCGTCGTGTTCAAGTCATGTTGCATTTATGGTTCATCGCCAGGAGAGGGCTGCCATGGCTCCATCGAACCAAAGAGTTGTTCATGATCAAGCCATGAATAATGTCCAGGAGGCCAACTTTAGGAACCCTCAAGGCGGTGGGGGTTTCGCCGACGAACATATCGATCGGAAGGCTGCCATGTACATATCATCAGTCCAAGAACGCTTTAGACTTGAGGGCTTAATCAATTGA

Protein sequence

MDARCRARGLVKGMLGPLHGEGMASCSSHVAFMVHRQERAAMAPSNQRVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN
Homology
BLAST of CmoCh15G000710 vs. ExPASy TrEMBL
Match: A0A0A0LQT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 0

Query: 1   MDARCRARGLVKGMLGPLHGEGMAS--------------CSSHVAFMVHRQERAAMAPSN 60
           MD+RCRARGLVKGM+GPLHGE M                CSSH++F VH QERA MAPSN
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSRSKITPTTSNASLCSSHISFTVHHQERALMAPSN 60

Query: 61  QRVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 100
            RVVHDQAMNNV EA   N  G G   DEHIDRKA++YISSVQERF+LEGLIN
Sbjct: 61  HRVVHDQAMNNVHEATLWNLYGVG--VDEHIDRKASLYISSVQERFKLEGLIN 111

BLAST of CmoCh15G000710 vs. ExPASy TrEMBL
Match: A0A5A7UMY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00160 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.0e-29
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 0

Query: 1   MDARCRARGLVKGMLGPLHGEGMAS-------------CSSHVAFMVHRQERAAMAPSNQ 60
           MD+RCRARGLVKGM+GPLHGE M               CSSH++F VH QER  MAPSN+
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSRKMAPTTSNASLCSSHISFTVHHQERVMMAPSNR 60

Query: 61  RV-VHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 100
           RV VHDQAMNNV EA   N  G G   DEHIDRKAA+YISSVQERF+LEGLIN
Sbjct: 61  RVLVHDQAMNNVHEATLWNLYGVG--VDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of CmoCh15G000710 vs. NCBI nr
Match: KAG6578363.1 (hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0

Query: 1   MDARCRARGLVKGMLGPLHGEGMASCSSHVAFMVHRQERAAMAPSNQRVVHDQAMNNVQE 60
           MDARCRARGLVKGMLGPLHGEGMASCSSHV+FMVHRQERAAM PSNQRVVHDQAMNNVQE
Sbjct: 1   MDARCRARGLVKGMLGPLHGEGMASCSSHVSFMVHRQERAAMPPSNQRVVHDQAMNNVQE 60

Query: 61  ANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 100
           ANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN
Sbjct: 61  ANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 99

BLAST of CmoCh15G000710 vs. NCBI nr
Match: KAA0056544.1 (hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK02718.1 hypothetical protein E5676_scaffold1154G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 6.2e-29
Identity = 75/113 (66.37%), Postives = 82/113 (72.57%), Query Frame = 0

Query: 1   MDARCRARGLVKGMLGPLHGEGMAS-------------CSSHVAFMVHRQERAAMAPSNQ 60
           MD+RCRARGLVKGM+GPLHGE M               CSSH++F VH QER  MAPSN+
Sbjct: 1   MDSRCRARGLVKGMVGPLHGEAMTGSRKMAPTTSNASLCSSHISFTVHHQERVMMAPSNR 60

Query: 61  RV-VHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 100
           RV VHDQAMNNV EA   N  G G   DEHIDRKAA+YISSVQERF+LEGLIN
Sbjct: 61  RVLVHDQAMNNVHEATLWNLYGVG--VDEHIDRKAALYISSVQERFKLEGLIN 111

BLAST of CmoCh15G000710 vs. NCBI nr
Match: KAE8652260.1 (hypothetical protein Csa_022307 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-26
Identity = 70/107 (65.42%), Postives = 76/107 (71.03%), Query Frame = 0

Query: 7   ARGLVKGMLGPLHGEGMAS--------------CSSHVAFMVHRQERAAMAPSNQRVVHD 66
           ARGLVKGM+GPLHGE M                CSSH++F VH QERA MAPSN RVVHD
Sbjct: 122 ARGLVKGMVGPLHGEAMTGSRSKITPTTSNASLCSSHISFTVHHQERALMAPSNHRVVHD 181

Query: 67  QAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 100
           QAMNNV EA   N  G G   DEHIDRKA++YISSVQERF+LEGLIN
Sbjct: 182 QAMNNVHEATLWNLYGVG--VDEHIDRKASLYISSVQERFKLEGLIN 226

BLAST of CmoCh15G000710 vs. NCBI nr
Match: KAG6602687.1 (hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 70/115 (60.87%), Postives = 74/115 (64.35%), Query Frame = 0

Query: 1   MDARCR-ARGLVKGMLGPLHGEGMA---------------SCSSHVAFMVHRQERAAMAP 60
           MD+RCR AR LV       HGE MA               SCS HV+FMVH QERA MA 
Sbjct: 1   MDSRCRSARPLVP------HGEAMASSRNTKPTATLLNASSCSCHVSFMVHHQERAKMAS 60

Query: 61  SNQRVVHDQAMNNVQEANFRNPQGGGGFADEHIDRKAAMYISSVQERFRLEGLIN 100
           SNQRVVH +AM NV EA F N  G G   DEHIDRKAAMYISSVQERFRLEG I+
Sbjct: 61  SNQRVVH-EAM-NVHEAKFWN--GYGVVVDEHIDRKAAMYISSVQERFRLEGSIS 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQT51.6e-3066.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G406070 PE=4 SV=1[more]
A0A5A7UMY13.0e-2966.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG6578363.11.3e-4797.98hypothetical protein SDJN03_22811, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0056544.16.2e-2966.37hypothetical protein E6C27_scaffold288G00460 [Cucumis melo var. makuwa] >TYK0271... [more]
KAE8652260.11.7e-2665.42hypothetical protein Csa_022307 [Cucumis sativus][more]
KAG6602687.11.3e-1860.87hypothetical protein SDJN03_07920, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36030FAMILY NOT NAMEDcoord: 25..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G000710.1CmoCh15G000710.1mRNA