CmoCh15G000650 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G000650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic
Location	Cmo_Chr15: 359743 .. 360144 (-)
RNA-Seq Expression	CmoCh15G000650
Synteny	CmoCh15G000650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCTTCTCCTTCGACTCTCTCGATTCTTATTTCTCCGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA

mRNA sequence

ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCTTCTCCTTCGACTCTCTCGATTCTTATTTCTCCGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA

Coding sequence (CDS)

ATGAAATCCGACTCCAATTCGCCATGGAAGTGGAACACAGCAATCACGAACAACTTCCACACCAAGGCTGACCACCACCATTTCTCTCTCCCCAACATTTTCGACGCCAATCGCCGGAACGCAAAGCAACCGCCACCCCTAGTCTTGGACGCCGGCGGAGGAGCTGGAGTTGGCTGCGGCGTCGGGCTCGGCTTTGGTCTTGTCGGCGGGATTGGCCATGGCGGCGCCTCTCCCTGGAATCACCTTCACCTCGTTTTCGGCCTCGGTCTCGGCTGTGGCGTTGGCCTAGGGCTTGGAATTGGCAAAGGGATTGGCTATGGCTTCTCCTTCGACTCTCTCGATTCTTATTTCTCCGATCACAAACCGAACCCTAGACAGAAGCCTCCTCTGATTCAGATTTGA

Protein sequence

MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFSDHKPNPRQKPPLIQI

Homology

[Close]

BLAST of CmoCh15G000650 vs. ExPASy TrEMBL
Match: A0A5A7UC28 (Fibroin heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00440 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.6e-36
Identity = 93/136 (68.38%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 1   MKSD-SNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPP--PLVLDAGGGAGV 60
           MKSD S+SPW       NNFHT      FS    FD +RRN K+ P   LVL+AGGGAGV
Sbjct: 1   MKSDSSSSPW-------NNFHTTI----FS----FDHDRRNTKELPALALVLEAGGGAGV 60

Query: 61  GCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYF 120
           GCG+G GFGLVGGIGHGGASPWNHLHLVFGLG GCGVGLGLGIG+G GYGFSF+SLDSYF
Sbjct: 61  GCGLGFGFGLVGGIGHGGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGFSFESLDSYF 120

Query: 121 SDHKPNPRQK-PPLIQ 133
           S    +P+ K P LIQ
Sbjct: 121 SHLNSDPKHKQPSLIQ 121

[Close]

BLAST of CmoCh15G000650 vs. ExPASy TrEMBL
Match: A0A0A0LSZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404970 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 8.4e-35
Identity = 89/134 (66.42%), Postives = 97/134 (72.39%), Query Frame = 0


Query: 1   MKSD-SNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
           MKSD SNSPW       NNF T            FD +RRN K+ P LVL+AGGGAGVGC
Sbjct: 1   MKSDSSNSPW-------NNFPTIF---------CFDQDRRNTKELPALVLEAGGGAGVGC 60

Query: 61  GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFSD 120
           G+G+GFGLVGGIGH GASPWNHLHLVFGLG GCGVGLGLGIG+G GYG SF S+DSYFS 
Sbjct: 61  GLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSH 118

Query: 121 HKPNPRQK-PPLIQ 133
              NP+ K P LIQ
Sbjct: 121 LISNPKPKQPSLIQ 118

[Close]

BLAST of CmoCh15G000650 vs. ExPASy TrEMBL
Match: A0A5N6QWW9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007887 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 1   MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
           +K+DS+S WKWN  ++N    K +   F +   F   R  A++   +VL  G G G+GCG
Sbjct: 8   IKADSDSIWKWNGNLSNK--KKNEKKQFPVAKFFQNGREAAEE---VVLGPGVGVGIGCG 67

Query: 61  VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFSDH 120
           VG+GFGLVGGIG+GG  PWNHL +VFG G+GCGVGLG G G+GIGYGFS +SL+SY S  
Sbjct: 68  VGMGFGLVGGIGYGG-WPWNHLQVVFGAGIGCGVGLGFGYGQGIGYGFSLESLESYTSKR 127

Query: 121 KPNPRQKPPLI 132
             +  +K  L+
Sbjct: 128 SSDSNKKKILM 132

[Close]

BLAST of CmoCh15G000650 vs. ExPASy TrEMBL
Match: A0A2N9FV55 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19064 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.9e-24
Identity = 69/134 (51.49%), Postives = 89/134 (66.42%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
           +K+DSNS W  WN    N+   K +   F +      NR  A++   +VL  GGG G+GC
Sbjct: 8   IKADSNSFWNIWNG--NNSNKKKNEKKQFPVSKFLHNNRMKAEE---IVLGPGGGVGIGC 67

Query: 61  GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFSD 120
           GVG+GFGLVGGIG+GG  PWNHL LVFG+G+GCGVG+G G G+GIG GFS DSL+SY S 
Sbjct: 68  GVGMGFGLVGGIGYGG-WPWNHLQLVFGVGMGCGVGVGFGYGQGIGNGFSLDSLESYLSK 127

Query: 121 HKPNPRQKPPLIQI 134
              +  +K  +I+I
Sbjct: 128 QSSSDSKKRVVIEI 135

[Close]

BLAST of CmoCh15G000650 vs. ExPASy TrEMBL
Match: A0A7N2KWH8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-24
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAITN-NFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVG 60
           +K+DS+S W  WN   +N   + K    HF +      N + A++   +VL  GGG G+G
Sbjct: 8   IKTDSDSFWNIWNENSSNKKKNEKKKKKHFPVSKFLHNNPKKAEE---IVLGPGGGVGIG 67

Query: 61  CGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFS 120
           CGVGLGFGLVGG+G+GG  PWNHL LV G+G+GCGVG+G G G+GIGYGFS +SL+SY S
Sbjct: 68  CGVGLGFGLVGGVGYGG-WPWNHLQLVIGIGIGCGVGVGFGYGQGIGYGFSLESLESYLS 127

Query: 121 DHKPNPRQKPPLIQI 134
               +  +K  +I+I
Sbjct: 128 KQSSSDSKKRVVIEI 138

[Close]

BLAST of CmoCh15G000650 vs. NCBI nr
Match: KAG6578355.1 (hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 277.3 bits (708), Expect = 6.8e-71
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
           MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG
Sbjct: 1   MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60

Query: 61  VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFSDH 120
           VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYG SFDSLDSYFSDH
Sbjct: 61  VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGISFDSLDSYFSDH 120

Query: 121 KPNPRQKPPLIQI 134
           KPNPRQKPPLIQI
Sbjct: 121 KPNPRQKPPLIQI 133

[Close]

BLAST of CmoCh15G000650 vs. NCBI nr
Match: KAA0051071.1 (fibroin heavy chain [Cucumis melo var. makuwa] >TYK02741.1 fibroin heavy chain [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-35
Identity = 93/136 (68.38%), Postives = 102/136 (75.00%), Query Frame = 0


Query: 1   MKSD-SNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPP--PLVLDAGGGAGV 60
           MKSD S+SPW       NNFHT      FS    FD +RRN K+ P   LVL+AGGGAGV
Sbjct: 1   MKSDSSSSPW-------NNFHTTI----FS----FDHDRRNTKELPALALVLEAGGGAGV 60

Query: 61  GCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYF 120
           GCG+G GFGLVGGIGHGGASPWNHLHLVFGLG GCGVGLGLGIG+G GYGFSF+SLDSYF
Sbjct: 61  GCGLGFGFGLVGGIGHGGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGFSFESLDSYF 120

Query: 121 SDHKPNPRQK-PPLIQ 133
           S    +P+ K P LIQ
Sbjct: 121 SHLNSDPKHKQPSLIQ 121

[Close]

BLAST of CmoCh15G000650 vs. NCBI nr
Match: KGN63146.1 (hypothetical protein Csa_022245 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34
Identity = 89/134 (66.42%), Postives = 97/134 (72.39%), Query Frame = 0


Query: 1   MKSD-SNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGC 60
           MKSD SNSPW       NNF T            FD +RRN K+ P LVL+AGGGAGVGC
Sbjct: 1   MKSDSSNSPW-------NNFPTIF---------CFDQDRRNTKELPALVLEAGGGAGVGC 60

Query: 61  GVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFSD 120
           G+G+GFGLVGGIGH GASPWNHLHLVFGLG GCGVGLGLGIG+G GYG SF S+DSYFS 
Sbjct: 61  GLGIGFGLVGGIGHAGASPWNHLHLVFGLGAGCGVGLGLGIGQGFGYGVSFQSVDSYFSH 118

Query: 121 HKPNPRQK-PPLIQ 133
              NP+ K P LIQ
Sbjct: 121 LISNPKPKQPSLIQ 118

[Close]

BLAST of CmoCh15G000650 vs. NCBI nr
Match: KAE8022053.1 (hypothetical protein FH972_007887 [Carpinus fangiana])

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-24
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 0


Query: 1   MKSDSNSPWKWNTAITNNFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVGCG 60
           +K+DS+S WKWN  ++N    K +   F +   F   R  A++   +VL  G G G+GCG
Sbjct: 8   IKADSDSIWKWNGNLSNK--KKNEKKQFPVAKFFQNGREAAEE---VVLGPGVGVGIGCG 67

Query: 61  VGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFSDH 120
           VG+GFGLVGGIG+GG  PWNHL +VFG G+GCGVGLG G G+GIGYGFS +SL+SY S  
Sbjct: 68  VGMGFGLVGGIGYGG-WPWNHLQVVFGAGIGCGVGLGFGYGQGIGYGFSLESLESYTSKR 127

Query: 121 KPNPRQKPPLI 132
             +  +K  L+
Sbjct: 128 SSDSNKKKILM 132

[Close]

BLAST of CmoCh15G000650 vs. NCBI nr
Match: XP_030955948.1 (protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Quercus lobata])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 67/135 (49.63%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 1   MKSDSNSPWK-WNTAITN-NFHTKADHHHFSLPNIFDANRRNAKQPPPLVLDAGGGAGVG 60
           +K+DS+S W  WN   +N   + K    HF +      N + A++   +VL  GGG G+G
Sbjct: 8   IKTDSDSFWNIWNENSSNKKKNEKKKKKHFPVSKFLHNNPKKAEE---IVLGPGGGVGIG 67

Query: 61  CGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSLDSYFS 120
           CGVGLGFGLVGG+G+GG  PWNHL LV G+G+GCGVG+G G G+GIGYGFS +SL+SY S
Sbjct: 68  CGVGLGFGLVGGVGYGG-WPWNHLQLVIGIGIGCGVGVGFGYGQGIGYGFSLESLESYLS 127

Query: 121 DHKPNPRQKPPLIQI 134
               +  +K  +I+I
Sbjct: 128 KQSSSDSKKRVVIEI 138

[Close]

BLAST of CmoCh15G000650 vs. TAIR 10
Match: AT1G66820.1 (glycine-rich protein )

HSP 1 Score: 67.4 bits (163), Expect = 9.9e-12
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 52  GGGAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFD 111
           G G G+GCG G+G GL GG+G G +   +H ++V G G+GCG+G G G G G+G G+SFD
Sbjct: 42  GIGGGIGCGAGIGIGLSGGLGIGASEGLDHSNVVLGFGIGCGIGFGFGYGFGVGGGYSFD 101

Query: 112 SLDSYF 118
            +   F
Sbjct: 102 DIKERF 107

[Close]

BLAST of CmoCh15G000650 vs. TAIR 10
Match: AT4G10330.1 (glycine-rich protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-10
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 54  GAGVGCGVGLGFGLVGGIGHGGASPWNHLHLVFGLGLGCGVGLGLGIGKGIGYGFSFDSL 113
           G GVGCG G G GL+GG+G G   P     L FGLG G G G+G+G G G+G G ++D  
Sbjct: 34  GLGVGCGFGFGAGLIGGVGFGPGVP----GLQFGLGFGAGCGIGVGFGYGVGRGAAYDHS 93

Query: 114 DSYFSDHKPNPRQKPPLI 132
            SY++  KP+  +   LI
Sbjct: 94  RSYYNVGKPSLNEVDSLI 107

The following BLAST results are available for this feature:

BLAST of CmoCh15G000650 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh15G000650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC28	7.6e-36	68.38	Fibroin heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154...	[more]
A0A0A0LSZ2	8.4e-35	66.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G404970 PE=4 SV=1	[more]
A0A5N6QWW9	1.4e-24	51.15	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007887 PE=4 SV=1	[more]
A0A2N9FV55	3.9e-24	51.49	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19064 PE=4 SV=1	[more]
A0A7N2KWH8	5.1e-24	49.63	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmoCh15G000650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578355.1	6.8e-71	99.25	hypothetical protein SDJN03_22803, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0051071.1	1.6e-35	68.38	fibroin heavy chain [Cucumis melo var. makuwa] >TYK02741.1 fibroin heavy chain [...	[more]
KGN63146.1	1.7e-34	66.42	hypothetical protein Csa_022245 [Cucumis sativus]	[more]
KAE8022053.1	2.8e-24	51.15	hypothetical protein FH972_007887 [Carpinus fangiana]	[more]
XP_030955948.1	1.1e-23	49.63	protein TRIGALACTOSYLDIACYLGLYCEROL 5, chloroplastic [Quercus lobata]	[more]

BLAST of CmoCh15G000650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66820.1	9.9e-12	48.48	glycine-rich protein	[more]
AT4G10330.1	2.4e-10	46.15	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34201:SF6	GLYCINE-RICH PROTEIN	coord: 2..126
None	No IPR available	PANTHER	PTHR34201	GLYCINE-RICH PROTEIN	coord: 2..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G000650.1	CmoCh15G000650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane