CmoCh14G019780 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G019780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type E3 ubiquitin transferase
Location	Cmo_Chr14: 14563522 .. 14564463 (-)
RNA-Seq Expression	CmoCh14G019780
Synteny	CmoCh14G019780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTGTGGGAAACTCAAATCAATGGCAGCCATATGCTTACAAGGACTGTTCTTTAGAGATTTGCAGCATATACTGTCCTCAGTGGTGCTACATCATCTTTCCACCACCTCCACCTTTTGGCTATGGCAGCCATGGCGATTCCGCCACTGATTTCTCTCCTCTCATCATCGCCATCATTGGAATCTTGGCTAGCGCCTTCATTGTGGTAAGCTACTACACCATCATCTCCAAATATTGCAGGAACAGAGCTGCTACCACCAACGCTGTCATGGAAATGGATGATGAAGAAAATCTTACCCAAATCCTCCATGAAAACCAGCTGCAAGCTCCTCCTCCTCCTGCAGGCCTGGATCATGCTCTCATCAAGTCCATCACAGTCTGCAAGTATAAAAGAGGAGATGACTTAGTTGAAGGTACTGATTGCTCAGTTTGCCTGAGTGAGTTTCAAGAAAATGAGAGCTTAAGGTTGCTGCCAAAGTGCAGCCATGCCTTTCATCTTCCTTGCATTGACACATGGCTCAAATCTCACTCAACTTGCCCTCTCTGCCGCTCCAACATTTCACCAACCAATCTTTCCCCACCCCCAACACAAGAAATTCTAAGAACAGAACACCTAAATGCATCTGCTCTTCAGTATCAACACAGAACCAATGACACAGTAGTTGTTGTAGTGGTTCAAGATTTGCAGGATTTAACAGTGAGGCAAGAAACTGCTGTTTCTGGGCTTGAGAATGATGATGCTTCTTCCAAGAATCGAAGGCAAAGTTTTGCATCAGATAGTCAAGACTCAGAGCCAAGAGACAGAATGAATCAAGTTAAGCCGTATAGAAGGTCAGTTTCCTTGAATTCTTTATCATGGCAAGGGCAGGTTTCTGTTGCTGATATATTGAGAGCCAGTCAAGATAGTGAGGATGAGGTAGAGGAAGATGAATTATAA

mRNA sequence

ATGGGTTCTGTGGGAAACTCAAATCAATGGCAGCCATATGCTTACAAGGACTGTTCTTTAGAGATTTGCAGCATATACTGTCCTCAGTGGTGCTACATCATCTTTCCACCACCTCCACCTTTTGGCTATGGCAGCCATGGCGATTCCGCCACTGATTTCTCTCCTCTCATCATCGCCATCATTGGAATCTTGGCTAGCGCCTTCATTGTGGTAAGCTACTACACCATCATCTCCAAATATTGCAGGAACAGAGCTGCTACCACCAACGCTGTCATGGAAATGGATGATGAAGAAAATCTTACCCAAATCCTCCATGAAAACCAGCTGCAAGCTCCTCCTCCTCCTGCAGGCCTGGATCATGCTCTCATCAAGTCCATCACAGTCTGCAAGTATAAAAGAGGAGATGACTTAGTTGAAGGTACTGATTGCTCAGTTTGCCTGAGTGAGTTTCAAGAAAATGAGAGCTTAAGGTTGCTGCCAAAGTGCAGCCATGCCTTTCATCTTCCTTGCATTGACACATGGCTCAAATCTCACTCAACTTGCCCTCTCTGCCGCTCCAACATTTCACCAACCAATCTTTCCCCACCCCCAACACAAGAAATTCTAAGAACAGAACACCTAAATGCATCTGCTCTTCAGTATCAACACAGAACCAATGACACAGTAGTTGTTGTAGTGGTTCAAGATTTGCAGGATTTAACAGTGAGGCAAGAAACTGCTGTTTCTGGGCTTGAGAATGATGATGCTTCTTCCAAGAATCGAAGGCAAAGTTTTGCATCAGATAGTCAAGACTCAGAGCCAAGAGACAGAATGAATCAAGTTAAGCCGTATAGAAGGTCAGTTTCCTTGAATTCTTTATCATGGCAAGGGCAGGTTTCTGTTGCTGATATATTGAGAGCCAGTCAAGATAGTGAGGATGAGGTAGAGGAAGATGAATTATAA

Coding sequence (CDS)

ATGGGTTCTGTGGGAAACTCAAATCAATGGCAGCCATATGCTTACAAGGACTGTTCTTTAGAGATTTGCAGCATATACTGTCCTCAGTGGTGCTACATCATCTTTCCACCACCTCCACCTTTTGGCTATGGCAGCCATGGCGATTCCGCCACTGATTTCTCTCCTCTCATCATCGCCATCATTGGAATCTTGGCTAGCGCCTTCATTGTGGTAAGCTACTACACCATCATCTCCAAATATTGCAGGAACAGAGCTGCTACCACCAACGCTGTCATGGAAATGGATGATGAAGAAAATCTTACCCAAATCCTCCATGAAAACCAGCTGCAAGCTCCTCCTCCTCCTGCAGGCCTGGATCATGCTCTCATCAAGTCCATCACAGTCTGCAAGTATAAAAGAGGAGATGACTTAGTTGAAGGTACTGATTGCTCAGTTTGCCTGAGTGAGTTTCAAGAAAATGAGAGCTTAAGGTTGCTGCCAAAGTGCAGCCATGCCTTTCATCTTCCTTGCATTGACACATGGCTCAAATCTCACTCAACTTGCCCTCTCTGCCGCTCCAACATTTCACCAACCAATCTTTCCCCACCCCCAACACAAGAAATTCTAAGAACAGAACACCTAAATGCATCTGCTCTTCAGTATCAACACAGAACCAATGACACAGTAGTTGTTGTAGTGGTTCAAGATTTGCAGGATTTAACAGTGAGGCAAGAAACTGCTGTTTCTGGGCTTGAGAATGATGATGCTTCTTCCAAGAATCGAAGGCAAAGTTTTGCATCAGATAGTCAAGACTCAGAGCCAAGAGACAGAATGAATCAAGTTAAGCCGTATAGAAGGTCAGTTTCCTTGAATTCTTTATCATGGCAAGGGCAGGTTTCTGTTGCTGATATATTGAGAGCCAGTCAAGATAGTGAGGATGAGGTAGAGGAAGATGAATTATAA

Protein sequence

MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGDSATDFSPLIIAIIGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDHALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHSTCPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTVRQETAVSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRSVSLNSLSWQGQVSVADILRASQDSEDEVEEDEL

Homology

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BLAST of CmoCh14G019780 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 248.4 bits (633), Expect = 1.0e-64
Identity = 159/325 (48.92%), Postives = 195/325 (60.00%), Query Frame = 0


Query: 1   MGSVGNSNQWQPY--AYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGD-SATDFSPLI 60
           MGS GN N W     +Y+DCS  +CS+YCPQWCY+IFPPPP F      D S++DFSPL+
Sbjct: 1   MGSTGNPNPWGTTYDSYRDCSQGVCSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLL 60

Query: 61  IAIIGILASAFIVVSYYTIISKYCRNR--------AATTNAV-----MEMDDEENLTQIL 120
           IA+IGILASAFI+VSYYT+ISKYC  R        AA  N +      +  +  N     
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 121 HENQLQAPPPPAGLDHALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSH 180
           + NQ        GLD +LIKSITV KY++ D  VE +DCSVCLSEFQENESLRLLPKC+H
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNH 180

Query: 181 AFHLPCIDTWLKSHSTCPLCRSNI---SPTNLSPPPTQEILRTEHLNASALQYQHRTNDT 240
           AFH+PCIDTWLKSHS CPLCR+ I   S   +     Q+I+ TE+ + S       T D 
Sbjct: 181 AFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIV-TENNSIS-------TGDD 240

Query: 241 VVVVVVQDLQDLTVRQETAVSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRSV 300
            VVVV  DL++   R ET      N+ ++ K        DS+D E           RRS 
Sbjct: 241 SVVVVNLDLENSRSRNETV-----NEGSTPKPPEM---QDSRDGEE----------RRSA 297

Query: 301 SLNSLSWQGQVSVADILRASQDSED 307
           SLN  S  G VS+ADILR  +D E+
Sbjct: 301 SLN--SGGGVVSIADILREIEDDEE 297

[Close]

BLAST of CmoCh14G019780 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.7e-62
Identity = 145/323 (44.89%), Postives = 190/323 (58.82%), Query Frame = 0


Query: 6   NSNQWQPY-AYKDCSLEICSIYCPQWCYIIFPPPPP--FGYGSHGDSATDFSPLIIAIIG 65
           N N W PY +Y DCS  IC+IYCPQWCY+IFPPPPP  F       S++ FSPL+IA+IG
Sbjct: 4   NPNPWSPYDSYNDCSQGICNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIG 63

Query: 66  ILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDHAL 125
           IL SA I+VSYYT+ISKYC     T+++  E  +  +  +    +  +      GL+ ++
Sbjct: 64  ILTSALILVSYYTLISKYCHRHHQTSSS--ETLNLNHNGEGFFSSTQRISTNGDGLNESM 123

Query: 126 IKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHSTCP 185
           IKSITV KYK GD  V+G+DCSVCLSEF+ENESLRLLPKC+HAFHLPCIDTWLKSHS CP
Sbjct: 124 IKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCP 183

Query: 186 LCRSNISPTNLSPPPTQEILR------------------TEHLNASALQYQHRTNDTVVV 245
           LCR+ ++  N    PT  + +                     +N +   Y+ +T D   V
Sbjct: 184 LCRAFVTGVN---NPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSV 243

Query: 246 VVVQDLQDLTVRQETAVSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRSVSLN 305
           VV++DL+           G  N DA S+ +      +++D +         P RRSVSLN
Sbjct: 244 VVIEDLE----------IGSRNSDARSELQLPEERRETKDEDS-------LPIRRSVSLN 301

Query: 306 SLSWQGQVSVADILRASQDSEDE 308
           S      VS+AD+LR  +D E E
Sbjct: 304 S---GVVVSIADVLREIEDEEGE 301

[Close]

BLAST of CmoCh14G019780 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 219.9 bits (559), Expect = 4.0e-56
Identity = 135/316 (42.72%), Postives = 175/316 (55.38%), Query Frame = 0


Query: 10  WQPY-AYKDCSLEICSIYCPQWCYIIFPPPPPF---GYGSHGDSATDFSPLIIAIIGILA 69
           W PY   +DCS  +CS+YCPQWCY IFPPPPPF   G  +   S   FSPL+IAIIG+LA
Sbjct: 8   WVPYEPTRDCSQGLCSMYCPQWCYFIFPPPPPFDVAGTSADDSSGPVFSPLVIAIIGVLA 67

Query: 70  SAFIVVSYYTIISKYCRNRAATTNAVMEMDD--------------EENLTQILHENQLQA 129
           SAF++VSYYT ISKYC   ++    V                     +     HE+   +
Sbjct: 68  SAFLLVSYYTFISKYCGTVSSLRGRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVS 127

Query: 130 PPPPAGLDHALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCI 189
             PP+GLD  LI  ITVCKY+RGD  V  TDCSVCL EF + ESLRLLP+CSHAFH  CI
Sbjct: 128 --PPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCI 187

Query: 190 DTWLKSHSTCPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQ 249
           DTWLKSHS CPLCR+NI+   +        L +      A       N   VVVV+  L+
Sbjct: 188 DTWLKSHSNCPLCRANITFVTVG-------LASPEPEGCAPGETGGDNTHEVVVVMDGLE 247

Query: 250 DLTVRQETAVS--GLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRSVSLNSLSWQ 306
           +L   Q+ AVS     +DD  +K+  +     +  +E R+   +  P +R  S   L   
Sbjct: 248 NLCEEQQEAVSRASTADDDHDAKDVAEGMEEANGAAEIRE---EGSPPKRGASSFDLHRD 307

[Close]

BLAST of CmoCh14G019780 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-40
Identity = 91/211 (43.13%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 1   MGSVGNSNQWQPYAY-KDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGD----SATDFSP 60
           M S  N + W  Y   +DC+  +CS +CPQWC  I   PPP  Y    +    S  + SP
Sbjct: 1   MESDPNPSAWNQYINPRDCTQGLCSTFCPQWCTYINFSPPPISYEQFLNDGVASNPNLSP 60

Query: 61  LIIAIIGILASAFIVVSYYTIISKYCRN--------RAATTNAVMEMDDEENLTQILHEN 120
           L+IAI GI A+AF++ +YYT++SKYC N         +  ++ +++++  E   Q   ++
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQ---DD 120

Query: 121 QLQAPPPPAGLDHALIKSITVCKYKRGDD--LVEGTDCSVCLSEFQENESLRLLPKCSHA 180
                   AGLD  LIK I   K K+  +   + GTDCS+CL EF E+ESLRLLPKC+H 
Sbjct: 121 PFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHT 180

Query: 181 FHLPCIDTWLKSHSTCPLCRSN-ISPTNLSP 196
           FH+ CID WLKSHS CPLCR+  I PT   P
Sbjct: 181 FHVVCIDRWLKSHSNCPLCRAKIIVPTTQQP 208

[Close]

BLAST of CmoCh14G019780 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 2.7e-28
Identity = 93/303 (30.69%), Postives = 144/303 (47.52%), Query Frame = 0


Query: 17  DCSLEICSIYCPQWC------YIIFPPPPPFG----------------YGSHGDSATDFS 76
           DCS  +C   CP  C      Y I P  PP+                 Y    DS++   
Sbjct: 22  DCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLD 81

Query: 77  PLIIAIIGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHE--NQLQAP 136
            + I  I     A ++  ++ +   +  +         + D+E+N T +  E  ++ Q  
Sbjct: 82  AISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDREQVD 141

Query: 137 PP-----PAGLDHALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFH 196
            P       GL  ++I SIT+C YKRGD L+E TDC VCL+EF+E+ESLRLLPKC+HAFH
Sbjct: 142 HPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFH 201

Query: 197 LPCIDTWLKSHSTCPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVV 256
           + CIDTWL SH+ CPLCR+ I+  +++ P     +      + +    H  ND    V  
Sbjct: 202 ISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGS----HLENDG---VDE 261

Query: 257 QDLQDLTVRQETAVSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPY---RRSVSLN 288
           +D  ++  R ++     ++ D   +  R     D  ++E ++R+  +K         S+N
Sbjct: 262 EDHGEIENRVDSDFKESDDSDIRIEIYRFDSDGDGSETETKERVRVLKECMDPNGGDSVN 317

[Close]

BLAST of CmoCh14G019780 vs. ExPASy TrEMBL
Match: A0A6J1IR45 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111479735 PE=3 SV=1)

HSP 1 Score: 606.7 bits (1563), Expect = 5.6e-170
Identity = 303/313 (96.81%), Postives = 307/313 (98.08%), Query Frame = 0


Query: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGDSATDFSPLIIAI 60
           MGSVGNSNQWQPYAY DCSLEICSIYCPQWCYIIFPPPPPFGYGS+GDSATDFSPLIIAI
Sbjct: 1   MGSVGNSNQWQPYAYNDCSLEICSIYCPQWCYIIFPPPPPFGYGSNGDSATDFSPLIIAI 60

Query: 61  IGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDH 120
           IGILASAFI+VSYYTIISKYCRNRAATTNA MEMDDEENLT I HENQLQA PPPAGLDH
Sbjct: 61  IGILASAFIMVSYYTIISKYCRNRAATTNAAMEMDDEENLTHIRHENQLQA-PPPAGLDH 120

Query: 121 ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST 180
           ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST
Sbjct: 121 ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST 180

Query: 181 CPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTVRQETA 240
           CPLCRSNISPTN+SPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTVRQETA
Sbjct: 181 CPLCRSNISPTNVSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTVRQETA 240

Query: 241 VSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRSVSLNSLSWQGQVSVADILRA 300
           VSGLENDDASSKNRRQSFASD QDSEPRDRMNQV+PYRRSVSLNSLSWQGQVSVADILRA
Sbjct: 241 VSGLENDDASSKNRRQSFASDCQDSEPRDRMNQVQPYRRSVSLNSLSWQGQVSVADILRA 300

Query: 301 SQDSEDEVEEDEL 314
           SQDSEDEVEEDEL
Sbjct: 301 SQDSEDEVEEDEL 312

[Close]

BLAST of CmoCh14G019780 vs. ExPASy TrEMBL
Match: A0A6J1E8M0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111431779 PE=3 SV=1)

HSP 1 Score: 571.6 bits (1472), Expect = 2.0e-159
Identity = 280/283 (98.94%), Postives = 281/283 (99.29%), Query Frame = 0


Query: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGDSATDFSPLIIAI 60
           MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGDSATDFSPLIIAI
Sbjct: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGDSATDFSPLIIAI 60

Query: 61  IGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDH 120
           IGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDH
Sbjct: 61  IGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDH 120

Query: 121 ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST 180
           ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST
Sbjct: 121 ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST 180

Query: 181 CPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTVRQETA 240
           CPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTVRQETA
Sbjct: 181 CPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTVRQETA 240

Query: 241 VSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRSVSL 284
           VSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRR V +
Sbjct: 241 VSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRVVRI 283

[Close]

BLAST of CmoCh14G019780 vs. ExPASy TrEMBL
Match: A0A6J1D151 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111016068 PE=3 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.2e-153
Identity = 280/323 (86.69%), Postives = 295/323 (91.33%), Query Frame = 0


Query: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGDSATDFSPLIIAI 60
           MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYG++GDS TDFSPLIIAI
Sbjct: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGNNGDSGTDFSPLIIAI 60

Query: 61  IGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDH 120
           IGILASAFI+VSYYTIISKYCRNRAATT+A MEMDDEENL QI HENQLQA  PPAGLD 
Sbjct: 61  IGILASAFILVSYYTIISKYCRNRAATTSAAMEMDDEENLAQIRHENQLQA--PPAGLDE 120

Query: 121 ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST 180
           ALIKSITVCKY RGD LVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST
Sbjct: 121 ALIKSITVCKYIRGDGLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST 180

Query: 181 CPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTVRQETA 240
           CPLCRSNISPTNL PPPTQEI RTEH+NA+ALQYQHR+NDTVVVVVVQDLQDLTV Q+TA
Sbjct: 181 CPLCRSNISPTNLFPPPTQEIQRTEHINAAALQYQHRSNDTVVVVVVQDLQDLTVSQQTA 240

Query: 241 VSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVK----------PYRRSVSLNSLSWQG 300
           V G+END ASSKN+RQSFAS SQDSEPRDRM QV+          P+RRSVSL+S SWQG
Sbjct: 241 VLGIENDGASSKNQRQSFASVSQDSEPRDRMIQVREDDVVGDVVQPFRRSVSLDSFSWQG 300

Query: 301 QVSVADILRASQDSEDEVEEDEL 314
           QVSVADILR SQDSE+EVEEDE+
Sbjct: 301 QVSVADILRESQDSEEEVEEDEM 321

[Close]

BLAST of CmoCh14G019780 vs. ExPASy TrEMBL
Match: A0A6J1G2W9 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111450329 PE=3 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.5e-151
Identity = 275/321 (85.67%), Postives = 291/321 (90.65%), Query Frame = 0


Query: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGDSATDFSPLIIAI 60
           MGSVGNSNQWQPYAY+DCSLEICSIYCPQWCYIIFPPPPPFGYG++ DS TDFSPLIIAI
Sbjct: 1   MGSVGNSNQWQPYAYRDCSLEICSIYCPQWCYIIFPPPPPFGYGANSDSGTDFSPLIIAI 60

Query: 61  IGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDH 120
           IGILASAFI+VSYYTIISKYCRNRA T+N+ MEMDDEENL+QI HENQLQAPPPPAGLD 
Sbjct: 61  IGILASAFILVSYYTIISKYCRNRATTSNSNMEMDDEENLSQIRHENQLQAPPPPAGLDE 120

Query: 121 ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST 180
           ALI SITVCKYKRGD LVEGTDCSVCLSEF+ENESLRLLPKCSHAFHLPCIDTWLKSHST
Sbjct: 121 ALINSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHST 180

Query: 181 CPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTV-RQET 240
           CPLCRSNISP NL PPPTQEI RTEHLN+   QYQHR+NDTVVVVVVQDL DLTV  QET
Sbjct: 181 CPLCRSNISPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLTVSSQET 240

Query: 241 AVSGLENDDASSKNRRQSFASDSQDSEPRDRM-------NQVKPYRRSVSLNSLSWQGQV 300
           AV GLEND  SSKN+RQSF SD+QDSEPRD M       + V+P+RRSVSLNSLSWQGQV
Sbjct: 241 AVLGLENDGVSSKNQRQSFVSDNQDSEPRDIMIHQTRQDDAVQPFRRSVSLNSLSWQGQV 300

Query: 301 SVADILRASQDSEDEVEEDEL 314
           SVADILRASQDSE+EVEEDEL
Sbjct: 301 SVADILRASQDSEEEVEEDEL 321

[Close]

BLAST of CmoCh14G019780 vs. ExPASy TrEMBL
Match: A0A6J1IC58 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111473464 PE=3 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 3.7e-150
Identity = 274/321 (85.36%), Postives = 291/321 (90.65%), Query Frame = 0


Query: 1   MGSVGNSNQWQPYAYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGDSATDFSPLIIAI 60
           MGSVGNSNQWQPYAY+DCSLEICSIYCPQWCYIIFPPPPPFGYG++ DS TDFSPLIIAI
Sbjct: 1   MGSVGNSNQWQPYAYRDCSLEICSIYCPQWCYIIFPPPPPFGYGTNSDSGTDFSPLIIAI 60

Query: 61  IGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDH 120
           IGILASAFI+VSYYTIISKYCRNRAAT+N+ MEMDDEENL+QI HENQLQAP PPAGLD 
Sbjct: 61  IGILASAFILVSYYTIISKYCRNRAATSNSNMEMDDEENLSQIRHENQLQAPLPPAGLDE 120

Query: 121 ALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHST 180
           ALIKSITVCKYKRGD LVEGTDCSVCLSEF+ENESLRLLPKCSHAFHLPCIDTWLKSHST
Sbjct: 121 ALIKSITVCKYKRGDGLVEGTDCSVCLSEFEENESLRLLPKCSHAFHLPCIDTWLKSHST 180

Query: 181 CPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVVQDLQDLTV-RQET 240
           CPLCRSNISP NL PPPTQEI RTEHLN+   QYQHR+NDTVVVVVVQDL DL V  QET
Sbjct: 181 CPLCRSNISPINLFPPPTQEIQRTEHLNSYNFQYQHRSNDTVVVVVVQDLPDLPVSSQET 240

Query: 241 AVSGLENDDASSKNRRQSFASDSQDSEPRDRM-------NQVKPYRRSVSLNSLSWQGQV 300
           AV GLEND  SSKN+RQSF SD+QDSEPR+ M       + V+P+RRSVSLNSLSWQGQV
Sbjct: 241 AVLGLENDGVSSKNQRQSFVSDNQDSEPRNIMIHQVRQDDAVQPFRRSVSLNSLSWQGQV 300

Query: 301 SVADILRASQDSEDEVEEDEL 314
           SVADILRASQDSE+EVEEDEL
Sbjct: 301 SVADILRASQDSEEEVEEDEL 321

[Close]

BLAST of CmoCh14G019780 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 248.4 bits (633), Expect = 7.4e-66
Identity = 159/325 (48.92%), Postives = 195/325 (60.00%), Query Frame = 0


Query: 1   MGSVGNSNQWQPY--AYKDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGD-SATDFSPLI 60
           MGS GN N W     +Y+DCS  +CS+YCPQWCY+IFPPPP F      D S++DFSPL+
Sbjct: 1   MGSTGNPNPWGTTYDSYRDCSQGVCSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLL 60

Query: 61  IAIIGILASAFIVVSYYTIISKYCRNR--------AATTNAV-----MEMDDEENLTQIL 120
           IA+IGILASAFI+VSYYT+ISKYC  R        AA  N +      +  +  N     
Sbjct: 61  IALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGAT 120

Query: 121 HENQLQAPPPPAGLDHALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSH 180
           + NQ        GLD +LIKSITV KY++ D  VE +DCSVCLSEFQENESLRLLPKC+H
Sbjct: 121 NPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNH 180

Query: 181 AFHLPCIDTWLKSHSTCPLCRSNI---SPTNLSPPPTQEILRTEHLNASALQYQHRTNDT 240
           AFH+PCIDTWLKSHS CPLCR+ I   S   +     Q+I+ TE+ + S       T D 
Sbjct: 181 AFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLTNQQIV-TENNSIS-------TGDD 240

Query: 241 VVVVVVQDLQDLTVRQETAVSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRSV 300
            VVVV  DL++   R ET      N+ ++ K        DS+D E           RRS 
Sbjct: 241 SVVVVNLDLENSRSRNETV-----NEGSTPKPPEM---QDSRDGEE----------RRSA 297

Query: 301 SLNSLSWQGQVSVADILRASQDSED 307
           SLN  S  G VS+ADILR  +D E+
Sbjct: 301 SLN--SGGGVVSIADILREIEDDEE 297

[Close]

BLAST of CmoCh14G019780 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-63
Identity = 145/323 (44.89%), Postives = 190/323 (58.82%), Query Frame = 0


Query: 6   NSNQWQPY-AYKDCSLEICSIYCPQWCYIIFPPPPP--FGYGSHGDSATDFSPLIIAIIG 65
           N N W PY +Y DCS  IC+IYCPQWCY+IFPPPPP  F       S++ FSPL+IA+IG
Sbjct: 4   NPNPWSPYDSYNDCSQGICNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIG 63

Query: 66  ILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHENQLQAPPPPAGLDHAL 125
           IL SA I+VSYYT+ISKYC     T+++  E  +  +  +    +  +      GL+ ++
Sbjct: 64  ILTSALILVSYYTLISKYCHRHHQTSSS--ETLNLNHNGEGFFSSTQRISTNGDGLNESM 123

Query: 126 IKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHSTCP 185
           IKSITV KYK GD  V+G+DCSVCLSEF+ENESLRLLPKC+HAFHLPCIDTWLKSHS CP
Sbjct: 124 IKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCP 183

Query: 186 LCRSNISPTNLSPPPTQEILR------------------TEHLNASALQYQHRTNDTVVV 245
           LCR+ ++  N    PT  + +                     +N +   Y+ +T D   V
Sbjct: 184 LCRAFVTGVN---NPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSV 243

Query: 246 VVVQDLQDLTVRQETAVSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPYRRSVSLN 305
           VV++DL+           G  N DA S+ +      +++D +         P RRSVSLN
Sbjct: 244 VVIEDLE----------IGSRNSDARSELQLPEERRETKDEDS-------LPIRRSVSLN 301

Query: 306 SLSWQGQVSVADILRASQDSEDE 308
           S      VS+AD+LR  +D E E
Sbjct: 304 S---GVVVSIADVLREIEDEEGE 301

[Close]

BLAST of CmoCh14G019780 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 168.3 bits (425), Expect = 9.7e-42
Identity = 91/211 (43.13%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 1   MGSVGNSNQWQPYAY-KDCSLEICSIYCPQWCYIIFPPPPPFGYGSHGD----SATDFSP 60
           M S  N + W  Y   +DC+  +CS +CPQWC  I   PPP  Y    +    S  + SP
Sbjct: 1   MESDPNPSAWNQYINPRDCTQGLCSTFCPQWCTYINFSPPPISYEQFLNDGVASNPNLSP 60

Query: 61  LIIAIIGILASAFIVVSYYTIISKYCRN--------RAATTNAVMEMDDEENLTQILHEN 120
           L+IAI GI A+AF++ +YYT++SKYC N         +  ++ +++++  E   Q   ++
Sbjct: 61  LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQ---DD 120

Query: 121 QLQAPPPPAGLDHALIKSITVCKYKRGDD--LVEGTDCSVCLSEFQENESLRLLPKCSHA 180
                   AGLD  LIK I   K K+  +   + GTDCS+CL EF E+ESLRLLPKC+H 
Sbjct: 121 PFALESSTAGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHT 180

Query: 181 FHLPCIDTWLKSHSTCPLCRSN-ISPTNLSP 196
           FH+ CID WLKSHS CPLCR+  I PT   P
Sbjct: 181 FHVVCIDRWLKSHSNCPLCRAKIIVPTTQQP 208

[Close]

BLAST of CmoCh14G019780 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-29
Identity = 93/303 (30.69%), Postives = 144/303 (47.52%), Query Frame = 0


Query: 17  DCSLEICSIYCPQWC------YIIFPPPPPFG----------------YGSHGDSATDFS 76
           DCS  +C   CP  C      Y I P  PP+                 Y    DS++   
Sbjct: 22  DCSNGVCDPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLD 81

Query: 77  PLIIAIIGILASAFIVVSYYTIISKYCRNRAATTNAVMEMDDEENLTQILHE--NQLQAP 136
            + I  I     A ++  ++ +   +  +         + D+E+N T +  E  ++ Q  
Sbjct: 82  AISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDREQVD 141

Query: 137 PP-----PAGLDHALIKSITVCKYKRGDDLVEGTDCSVCLSEFQENESLRLLPKCSHAFH 196
            P       GL  ++I SIT+C YKRGD L+E TDC VCL+EF+E+ESLRLLPKC+HAFH
Sbjct: 142 HPIWLIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFH 201

Query: 197 LPCIDTWLKSHSTCPLCRSNISPTNLSPPPTQEILRTEHLNASALQYQHRTNDTVVVVVV 256
           + CIDTWL SH+ CPLCR+ I+  +++ P     +      + +    H  ND    V  
Sbjct: 202 ISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGS----HLENDG---VDE 261

Query: 257 QDLQDLTVRQETAVSGLENDDASSKNRRQSFASDSQDSEPRDRMNQVKPY---RRSVSLN 288
           +D  ++  R ++     ++ D   +  R     D  ++E ++R+  +K         S+N
Sbjct: 262 EDHGEIENRVDSDFKESDDSDIRIEIYRFDSDGDGSETETKERVRVLKECMDPNGGDSVN 317

[Close]

BLAST of CmoCh14G019780 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-29
Identity = 76/180 (42.22%), Postives = 107/180 (59.44%), Query Frame = 0


Query: 29  QWCYIIFPPPPPFGYGSHGDSATDFSPLIIAIIG-ILASAFIVVSYYTIISKYCRNRAAT 88
           ++C+  +PPPPP        S     P  I ++G I+   F+V   Y  I++  R  AA+
Sbjct: 19  RFCFRQYPPPPPPPPPPRELSL--LLPTSICVVGSIILFLFLVFFLYLHITQQRRISAAS 78

Query: 89  -----TNAVMEMD--DEENLTQILHENQLQAPPPPAGLDHALIKSITVCKYKRGDDLVEG 148
                TN   + D  +E + +   H  Q+    P  GL  + I SITV  +K+G+ +++G
Sbjct: 79  VTPGDTNQQEDEDETEERDFSDFHHVWQI----PTVGLHRSAINSITVVGFKKGEGIIDG 138

Query: 149 TDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHSTCPLCRSNISPTNLSPPPTQE 201
           T+CSVCL+EF+E+ESLRLLPKCSHAFHL CIDTWL SH  CPLCR+ +    ++ PP QE
Sbjct: 139 TECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV--LLITEPPHQE 190

The following BLAST results are available for this feature:

BLAST of CmoCh14G019780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRQ8	1.0e-64	48.92	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q9LF64	3.7e-62	44.89	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q7XLY8	4.0e-56	42.72	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
P0C041	1.4e-40	43.13	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q8LFY8	2.7e-28	30.69	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]

BLAST of CmoCh14G019780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IR45	5.6e-170	96.81	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111479735 P...	[more]
A0A6J1E8M0	2.0e-159	98.94	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111431779...	[more]
A0A6J1D151	1.2e-153	86.69	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11101606...	[more]
A0A6J1G2W9	1.5e-151	85.67	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111450329...	[more]
A0A6J1IC58	3.7e-150	85.36	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111473464 P...	[more]

BLAST of CmoCh14G019780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03550.1	7.4e-66	48.92	RING/U-box superfamily protein	[more]
AT5G17600.1	2.6e-63	44.89	RING/U-box superfamily protein	[more]
AT4G17905.1	9.7e-42	43.13	RING/U-box superfamily protein	[more]
AT1G72220.1	1.9e-29	30.69	RING/U-box superfamily protein	[more]
AT5G10380.1	7.2e-29	42.22	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 143..184 e-value: 2.1E-7 score: 40.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 142..185 e-value: 1.0E-13 score: 51.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 143..185 score: 12.961374
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 118..192 e-value: 7.6E-22 score: 78.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..279
None	No IPR available	PANTHER	PTHR45676:SF95	RING-H2 FINGER PROTEIN ATL53-RELATED	coord: 3..309
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 142..185 e-value: 6.92341E-18 score: 73.8753
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 135..191
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 3..309

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G019780.1	CmoCh14G019780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane