CmoCh14G019090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G019090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionglutathione transferase GST 23-like
LocationCmo_Chr14: 14210035 .. 14210988 (-)
RNA-Seq ExpressionCmoCh14G019090
SyntenyCmoCh14G019090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTCAGATCACAATTCTTGTGGTGATATGCAAATAGGTACGAACTCTACTCCTTATGTAGTGCTGAAAATATTAGTCAATCTTGGATGTTGGAGTTGCTCTGAACCACCAAAAATGGTGAAGTTGTTGGATTCTGTTCTTCAGTTCTTCGAATTAGCTTTAGCTTTGGCCATTATTTTCAGAATTTCCATTGTTGAGTAGGTAAGCTGCAGGGCTTTGAAGATAGCTGTTATTCAGTGTGGAGGGTTTAACCAATCCAAATACATCAATGTCAGGGACTTGCTTCTTCTTTATGATCCCCGACCTCTGCCCGTCCACGCTGCACAGCCGCACGGCCCAATTGAGGTAAGGATACACTGTTGTCTCGTGAGATTAGTTGAGTTTGAACGTATTTTTTTTATACTCAAATCGGCTTAATTAGAACATTTATAAGTTTGTGTCTATGTGGTGAATTAAATTTCTGAAGTATCTAACTAAACATTGATTAATCGGTTCCCGCAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATCGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGTGGAGAACTCTTTAACTTTTGACTACTCATATGTTAATAATGGCTTGAATATTGTATATAACATATACATGAATATAGGCATGACTTATTAAGAAACCTCTATAATGCTAAAATTAATATTTAAGACGAGTTAAGGTTCCAG

mRNA sequence

ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTCAGATCACAATTCTTGTGGTGATATGCAAATAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATCGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGTGGAGAACTCTTTAACTTTTGACTACTCATATGTTAATAATGGCTTGAATATTGTATATAACATATACATGAATATAGGCATGACTTATTAAGAAACCTCTATAATGCTAAAATTAATATTTAAGACGAGTTAAGGTTCCAG

Coding sequence (CDS)

ATGATTGCCATTGCAAGGAAGGCTGAGAAAGATGACTGCCTGAACATGTTGCAGAGTCCGTATGAACTCTCAGATCACAATTCTTGTGGTGATATGCAAATAGCGGTGAAGAAAGCTAGGGCAGAGGCGATCGAATTCCTAAGAACAATGCCTTGGCGACAAGAAATTCTTCACCGGAGAGGAGATCGGCACCCTGGATTTGGAGTTCGGAGGAATTGTGCATGCGATGAATTCCCTGGCTTGTACGCTTGGACCCATAACTTAAAGAAAGCTGCTCTGATCAGAGATAACCTGCCGGACGCCGACAAGTTGGCCGGAATATACAAGCGCCTGTACGAGCAGCGGCAGTGGAGAACTCTTTAA

Protein sequence

MIAIARKAEKDDCLNMLQSPYELSDHNSCGDMQIAVKKARAEAIEFLRTMPWRQEILHRRGDRHPGFGVRRNCACDEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQRQWRTL
Homology
[Close]
BLAST of CmoCh14G019090 vs. ExPASy TrEMBL
Match: A0A6J1IWB9 (uncharacterized protein LOC111479812 OS=Cucurbita maxima OX=3661 GN=LOC111479812 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.4e-34
Identity = 73/84 (86.90%), Postives = 74/84 (88.10%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRRGDRHPGFGVRRNCACDEFPGLYAWTHNLKKAALIRD 96
           +KARAE IE LRTMPWRQEIL RRGD   GFGVRRNCA DEFP LY WTHNLKKAALIRD
Sbjct: 31  EKARAETIELLRTMPWRQEILRRRGDLR-GFGVRRNCASDEFPRLYVWTHNLKKAALIRD 90

Query: 97  NLPDADKLAGIYKRLYEQRQWRTL 121
           NLPDADKLAGIYKRLYEQRQWR L
Sbjct: 91  NLPDADKLAGIYKRLYEQRQWRIL 113

[Close]
BLAST of CmoCh14G019090 vs. ExPASy TrEMBL
Match: A0A5D3CZI9 (Glutathione transferase GST 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002310 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-08
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRR--------GDRHPGFGVRRN-------------CAC 96
           +KA+AEAIEFLRT+   ++ L  +        G     FG   +                
Sbjct: 120 EKAKAEAIEFLRTI--EEQCLGDKKFFAGEEIGALDLAFGGIAHWLPVLEQITGKILLDA 179

Query: 97  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQR 116
           DEFP LYAWT N K+AA+IRDNLPDA KLAG+Y  L +++
Sbjct: 180 DEFPRLYAWTQNFKEAAVIRDNLPDAQKLAGLYNALRDKQ 217

[Close]
BLAST of CmoCh14G019090 vs. ExPASy TrEMBL
Match: A0A5A7U6Q4 (Glutathione transferase GST 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G004240 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-08
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRR--------GDRHPGFGVRRN-------------CAC 96
           +KA+AEAIEFLRT+   ++ L  +        G     FG   +                
Sbjct: 120 EKAKAEAIEFLRTI--EEQCLGDKKFFAGEEIGALDLAFGGIAHWLPVLEQITGKILLDA 179

Query: 97  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQR 116
           DEFP LYAWT N K+AA+IRDNLPDA KLAG+Y  L +++
Sbjct: 180 DEFPRLYAWTQNFKEAAVIRDNLPDAQKLAGLYNALRDKQ 217

[Close]
BLAST of CmoCh14G019090 vs. ExPASy TrEMBL
Match: A0A1S3AWB4 (glutathione transferase GST 23-like OS=Cucumis melo OX=3656 GN=LOC103483520 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-08
Identity = 42/100 (42.00%), Postives = 55/100 (55.00%), Query Frame = 0 

Query: 37  KKARAEAIEFLRTMPWRQEILHRR--------GDRHPGFGVRRN-------------CAC 96
           +KA+AEAIEFLRT+   ++ L  +        G     FG   +                
Sbjct: 120 EKAKAEAIEFLRTI--EEQCLGDKKFFAGEEIGALDLAFGGIAHWLPVLEQITGKILLDA 179

Query: 97  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRLYEQR 116
           DEFP LYAWT N K+AA+IRDNLPDA KLAG+Y  L +++
Sbjct: 180 DEFPRLYAWTQNFKEAAVIRDNLPDAQKLAGLYNALRDKQ 217

[Close]
BLAST of CmoCh14G019090 vs. ExPASy TrEMBL
Match: A0A0A0L6W3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133350 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0 

Query: 76  DEFPGLYAWTHNLKKAALIRDNLPDADKLAGIYKRL 112
           D+FP LYAWT N K++A+IRDNLPDA KLA +Y  L
Sbjct: 178 DQFPRLYAWTQNFKESAVIRDNLPDAQKLAALYNAL 213

The following BLAST results are available for this feature:
BLAST of CmoCh14G019090 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh14G019090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IWB96.4e-3486.90uncharacterized protein LOC111479812 OS=Cucurbita maxima OX=3661 GN=LOC111479812... [more]
A0A5D3CZI96.1e-0842.00Glutathione transferase GST 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7U6Q46.1e-0842.00Glutathione transferase GST 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A1S3AWB46.1e-0842.00glutathione transferase GST 23-like OS=Cucumis melo OX=3656 GN=LOC103483520 PE=3... [more]
A0A0A0L6W31.7e-0566.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G133350 PE=3 SV=1[more]
BLAST of CmoCh14G019090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G019090.1CmoCh14G019090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006749 glutathione metabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004364 glutathione transferase activity