CmoCh14G016610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G016610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CAP-Gly domain-containing linker protein 1-like
Location	Cmo_Chr14: 13114491 .. 13116567 (-)
RNA-Seq Expression	CmoCh14G016610
Synteny	CmoCh14G016610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCCCCATCTCCTTTTAATTTTCCTCTCTTCTCTTTCCTCCATTTTTTGAATTTCGATTTCATCCCATCCCCTTCTCAAAACCCTAATTTTCAGTTCAACAGATTCGGTTCCATTCGATCCCTGCTTCTATGGCGGACGCCGACTCTTCCTCTCCCTCCGCCGCTGTCCCAGCTCCTCTATCGGCTGTCAGTTCCCTTCATTTTCTTCGTTTTCACTTTCTTTTTGTTTCTGATCTGTTCTTTTACACATTTACTTACTCTGTTCTTCATCTTTATATCTGTTCCTCTTTGTTCACAGAAAAATGAGAATCTAACTCCCATTGGATCGAAAATTTCGGTATTATTTTCTTGTCCCGGCTTTTGAATTCTCCAGCTTATTAACTCGATTGTAGGATAGTTGAGAACTAAATTGTTCGTTGTTTGAAGTTCTTAAAATTTTGGGTCTGGTGGTGATTTAACCAAGAGTCCATGTGTTACTGAGATTGCTGCAATTTAGGTCTGATCTTCTGAGATTTGACATGTTTGATCTCAGGAATTGAACGAATCAAGAGCGGAGTTGCTTAATAGAATTCAATCTCTTAAGCAGGTGAAGTCTAGATTTACAATGCCCTAACTGTGAGGCTGATTATGTTGTATGTTCTTGCTCATTTAGTTGTTTTTGTCCTTTGATTTTCTTAACTTTCCCTGTGTTTTGAGCATTTCAGGATCTTCAGAATTGGAGGTCAAAGCTAGACACGCAAGTTAATACCTACCGGAGTGTAAGTTAATAGTAGTGAATTTTGTATTGCTTGTCCAGCCAGCTTGTCCTGTTTTAAGATATGTGTGTTTGTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGAGTGTGGAAACCTCTCTTGAATGATGCGTTTTAAAATTGTGAGGCTGACGACGATACGTAATGGGTCAAAGCGGACAATATTTGCTAGCGGTGGACTTGGGTTGCTAGAAATGGTATCAGAGCTAGACACCGAGCGGTTTGCTAGCGAGGACGCTAGGCCCCAAGGAGGTGGATTTTGAGATCCTACATTAGTTGGAGGGGGTACAAAGCATTCCTTATAAGAGTGTAGAAACCTCTTTCTAACAGATGCATTTTAGAACTGTGAGGTTGACAGCGATACGTAACGAGTCAAAGCGGACAATATCTGCTAGTAGTGAACTTGGGCGGTTATAGTTTGATTGTTCTAACATGATCCATAAACCAGTTGGTCATCCAAGTGGCTTACTGTAATCAAATCTTGTGGCTCATACAGACAGCCGGCTATTGTATGCTAGACATGATGTTGGTTAAACTGATTCTTGGAAGTTCAAAGAGATCTTAAGTAGTCTGCTAATGATATATATCTTCAATGCCTCATACAGGAACTCTCTGAACTCAAGAAATCACTTAATGTTGAGGTCGAGCACCTTCGAACGGTAAGTAATGCTTCACAGATCGAATACATTTTTAAACTTTTTGATACCATTTGGAAGGGTAATAAATTTGTAACATCAAAGTAGGAATTCCAAGAACTAAGGACTACCCTTCAGCAGCAACAAGAAGACGTGACTACCAGCCTGAGGAACTTGGGTGTAAGTTCTATATCTAACCACTTTCATACTCAAATATGCTGATAAGTTCTACCCACCCCATACCACCATATATGTTAGCCACTATTGAAGAAAACTACGTAACTTAGCAGCTTCAGGATGTTTCCGTGGACAATAACGAGACTCGACATCAACATCCAGCAGAAATCAGCGAGAAAGAAGATGCAGGCGAGGCAACGAAGGAAGGTCGTGGCTCGACGGAGGAAAAGGGGAATGAAGCTGGAAATTAAGAGGCACTTTGTAGCATGTAGGTTGTAAGTTTTTCATTGCATGATAAGATAACATTAGCAGCAGCTCTCTCGGCTATGGATTTCCACAATGTTTACTGTTTAAATTTCAATGCTTGTAATGGGTTTCTTTTCAATATTTCCCATTGAGGGTTCTATGAGATCTCCCTTTAGCTCACTCTCTACCTCTATCCTTCTCTCTAAACAACTTAATGATGGTCG

mRNA sequence

CGTCCCCATCTCCTTTTAATTTTCCTCTCTTCTCTTTCCTCCATTTTTTGAATTTCGATTTCATCCCATCCCCTTCTCAAAACCCTAATTTTCAGTTCAACAGATTCGGTTCCATTCGATCCCTGCTTCTATGGCGGACGCCGACTCTTCCTCTCCCTCCGCCGCTGTCCCAGCTCCTCTATCGGCTAAAAATGAGAATCTAACTCCCATTGGATCGAAAATTTCGGAATTGAACGAATCAAGAGCGGAGTTGCTTAATAGAATTCAATCTCTTAAGCAGGATCTTCAGAATTGGAGGTCAAAGCTAGACACGCAAGTTAATACCTACCGGAGTGAACTCTCTGAACTCAAGAAATCACTTAATGTTGAGGTCGAGCACCTTCGAACGGAATTCCAAGAACTAAGGACTACCCTTCAGCAGCAACAAGAAGACGTGACTACCAGCCTGAGGAACTTGGGTCTTCAGGATGTTTCCGTGGACAATAACGAGACTCGACATCAACATCCAGCAGAAATCAGCGAGAAAGAAGATGCAGGCGAGGCAACGAAGGAAGGTCGTGGCTCGACGGAGGAAAAGGGGAATGAAGCTGGAAATTAAGAGGCACTTTGTAGCATGTAGGTTGTAAGTTTTTCATTGCATGATAAGATAACATTAGCAGCAGCTCTCTCGGCTATGGATTTCCACAATGTTTACTGTTTAAATTTCAATGCTTGTAATGGGTTTCTTTTCAATATTTCCCATTGAGGGTTCTATGAGATCTCCCTTTAGCTCACTCTCTACCTCTATCCTTCTCTCTAAACAACTTAATGATGGTCG

Coding sequence (CDS)

ATGGCGGACGCCGACTCTTCCTCTCCCTCCGCCGCTGTCCCAGCTCCTCTATCGGCTAAAAATGAGAATCTAACTCCCATTGGATCGAAAATTTCGGAATTGAACGAATCAAGAGCGGAGTTGCTTAATAGAATTCAATCTCTTAAGCAGGATCTTCAGAATTGGAGGTCAAAGCTAGACACGCAAGTTAATACCTACCGGAGTGAACTCTCTGAACTCAAGAAATCACTTAATGTTGAGGTCGAGCACCTTCGAACGGAATTCCAAGAACTAAGGACTACCCTTCAGCAGCAACAAGAAGACGTGACTACCAGCCTGAGGAACTTGGGTCTTCAGGATGTTTCCGTGGACAATAACGAGACTCGACATCAACATCCAGCAGAAATCAGCGAGAAAGAAGATGCAGGCGAGGCAACGAAGGAAGGTCGTGGCTCGACGGAGGAAAAGGGGAATGAAGCTGGAAATTAA

Protein sequence

MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLDTQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNETRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN

Homology

[Close]

BLAST of CmoCh14G016610 vs. ExPASy TrEMBL
Match: A0A6J1GVY7 (CAP-Gly domain-containing linker protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111457976 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.5e-72
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN
Sbjct: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 155

[Close]

BLAST of CmoCh14G016610 vs. ExPASy TrEMBL
Match: A0A6J1IY17 (CAP-Gly domain-containing linker protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111479493 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.4e-70
Identity = 151/155 (97.42%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MADADSSSPS   PAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADADSSSPSVPAPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           TRHQHPAEISEKEDAGEATKEG GSTEEKGNEAGN
Sbjct: 121 TRHQHPAEISEKEDAGEATKEGCGSTEEKGNEAGN 155

[Close]

BLAST of CmoCh14G016610 vs. ExPASy TrEMBL
Match: A0A5D3D134 (CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00970 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 134/155 (86.45%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MAD+DSS+PS   PAPLSAK ENLTPIGSKI+ELNESR+ELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADSDSSTPS---PAPLSAKKENLTPIGSKITELNESRSELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVD NE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDTNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           T+HQHPA   +KEDA EA K+  G TEEKGNEA N
Sbjct: 121 TQHQHPAGSRDKEDADEAKKD--GLTEEKGNEAEN 150

[Close]

BLAST of CmoCh14G016610 vs. ExPASy TrEMBL
Match: A0A1S3AY29 (CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483838 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 134/155 (86.45%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MAD+DSS+PS   PAPLSAK ENLTPIGSKI+ELNESR+ELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADSDSSTPS---PAPLSAKKENLTPIGSKITELNESRSELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVD NE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDTNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           T+HQHPA   +KEDA EA K+  G TEEKGNEA N
Sbjct: 121 TQHQHPAGSRDKEDADEAKKD--GLTEEKGNEAEN 150

[Close]

BLAST of CmoCh14G016610 vs. ExPASy TrEMBL
Match: A0A1S3AXE8 (CAP-Gly domain-containing linker protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483838 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.5e-56
Identity = 134/156 (85.90%), Postives = 141/156 (90.38%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MAD+DSS+PS   PAPLSAK ENLTPIGSKI+ELNESR+ELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADSDSSTPS---PAPLSAKKENLTPIGSKITELNESRSELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLG-LQDVSVDNN 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLG LQDVSVD N
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGQLQDVSVDTN 120

Query: 121 ETRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           ET+HQHPA   +KEDA EA K+  G TEEKGNEA N
Sbjct: 121 ETQHQHPAGSRDKEDADEAKKD--GLTEEKGNEAEN 151

[Close]

BLAST of CmoCh14G016610 vs. NCBI nr
Match: XP_022956216.1 (CAP-Gly domain-containing linker protein 1-like [Cucurbita moschata] >KAG6582218.1 hypothetical protein SDJN03_22220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.8 bits (717), Expect = 7.1e-72
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN
Sbjct: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 155

[Close]

BLAST of CmoCh14G016610 vs. NCBI nr
Match: XP_023527984.1 (CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 8.7e-70
Identity = 151/155 (97.42%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MADADSSSPSAA PAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADADSSSPSAAAPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           TRHQHPAEIS+KEDA EATKEGRGSTEEKGNE GN
Sbjct: 121 TRHQHPAEISDKEDADEATKEGRGSTEEKGNEVGN 155

[Close]

BLAST of CmoCh14G016610 vs. NCBI nr
Match: XP_022979959.1 (CAP-Gly domain-containing linker protein 1 [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69
Identity = 151/155 (97.42%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MADADSSSPS   PAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADADSSSPSVPAPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           TRHQHPAEISEKEDAGEATKEG GSTEEKGNEAGN
Sbjct: 121 TRHQHPAEISEKEDAGEATKEGCGSTEEKGNEAGN 155

[Close]

BLAST of CmoCh14G016610 vs. NCBI nr
Match: KAG7018617.1 (hypothetical protein SDJN02_20487 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 140/155 (90.32%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MADADSSSPSAAVPAPLSA             ELNESRAELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADADSSSPSAAVPAPLSA-------------ELNESRAELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           TRHQHPAEIS+KEDAGEATKEG GSTEEKGNEAGN
Sbjct: 121 TRHQHPAEISKKEDAGEATKEGSGSTEEKGNEAGN 142

[Close]

BLAST of CmoCh14G016610 vs. NCBI nr
Match: XP_008438879.1 (PREDICTED: CAP-Gly domain-containing linker protein 1 isoform X2 [Cucumis melo] >KAA0049490.1 CAP-Gly domain-containing linker protein 1 isoform X2 [Cucumis melo var. makuwa] >TYK16169.1 CAP-Gly domain-containing linker protein 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 134/155 (86.45%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MADADSSSPSAAVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWRSKLD 60
           MAD+DSS+PS   PAPLSAK ENLTPIGSKI+ELNESR+ELLNRIQSLKQDLQNWRSKLD
Sbjct: 1   MADSDSSTPS---PAPLSAKKENLTPIGSKITELNESRSELLNRIQSLKQDLQNWRSKLD 60

Query: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDNNE 120
           TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVD NE
Sbjct: 61  TQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQDVSVDTNE 120

Query: 121 TRHQHPAEISEKEDAGEATKEGRGSTEEKGNEAGN 156
           T+HQHPA   +KEDA EA K+  G TEEKGNEA N
Sbjct: 121 TQHQHPAGSRDKEDADEAKKD--GLTEEKGNEAEN 150

[Close]

BLAST of CmoCh14G016610 vs. TAIR 10
Match: AT4G15790.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 6.5e-31
Identity = 82/145 (56.55%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 1   MAD--ADSSSPSA--AVPAPLSAKNENLTPIGSKISELNESRAELLNRIQSLKQDLQNWR 60
           MAD  +DS+SP A  +V +P + K +N  P+ SK++ELNESRAELLNRIQ+LKQDLQ+WR
Sbjct: 1   MADQTSDSTSPVAPLSVSSPTATKKDNTNPVDSKLTELNESRAELLNRIQNLKQDLQSWR 60

Query: 61  SKLDTQVNTYRSELSELKKSLNVEVEHLRTEFQELRTTLQQQQEDVTTSLRNLGLQD--V 120
            KLDTQV  YR ELS LKK+LN+EVE LR EF++L+TTL QQQ+DV+ SL++LGLQD   
Sbjct: 61  GKLDTQVKVYREELSGLKKTLNLEVEQLREEFKDLKTTLNQQQDDVSASLKSLGLQDSKE 120

Query: 121 SVD-NNETRHQHPAEISEKEDAGEA 139
            +D  +E   +    +S  ++A EA
Sbjct: 121 QIDKRSEVTEEKVEALSTDDNAKEA 145

The following BLAST results are available for this feature:

BLAST of CmoCh14G016610 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G016610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GVY7	3.5e-72	100.00	CAP-Gly domain-containing linker protein 1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IY17	9.4e-70	97.42	CAP-Gly domain-containing linker protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5D3D134	1.8e-57	86.45	CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo var. makuw...	[more]
A0A1S3AY29	1.8e-57	86.45	CAP-Gly domain-containing linker protein 1 isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
A0A1S3AXE8	4.5e-56	85.90	CAP-Gly domain-containing linker protein 1 isoform X1 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of CmoCh14G016610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956216.1	7.1e-72	100.00	CAP-Gly domain-containing linker protein 1-like [Cucurbita moschata] >KAG6582218...	[more]
XP_023527984.1	8.7e-70	97.42	CAP-Gly domain-containing linker protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022979959.1	1.9e-69	97.42	CAP-Gly domain-containing linker protein 1 [Cucurbita maxima]	[more]
KAG7018617.1	1.3e-60	90.32	hypothetical protein SDJN02_20487 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008438879.1	3.8e-57	86.45	PREDICTED: CAP-Gly domain-containing linker protein 1 isoform X2 [Cucumis melo] ...	[more]

BLAST of CmoCh14G016610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15790.1	6.5e-31	56.55	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 31..101
None	No IPR available	GENE3D	1.20.58.130		coord: 36..100 e-value: 8.9E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..155
None	No IPR available	PANTHER	PTHR34681:SF2	UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRIN	coord: 1..141
None	No IPR available	PANTHER	PTHR34681	UVEAL AUTOANTIGEN WITH COILED-COIL/ANKYRIN	coord: 1..141
None	No IPR available	SUPERFAMILY	58113	Apolipoprotein A-I	coord: 33..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G016610.1	CmoCh14G016610.1	mRNA