CmoCh14G016580 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G016580
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S21
LocationCmo_Chr14: 13101222 .. 13103628 (+)
RNA-Seq ExpressionCmoCh14G016580
SyntenyCmoCh14G016580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAATGTATTTATTATCTATTGCAATATTATTTTTTTACAATTAGCCTCGAAATCTATGCAACAATATTTTTTATTTTTTACGTGTATAATTTTTTTAAACTAATCATTTTTATTTTTATTATTTTTTATTTTAATGATCTATCATTTACTTATATTTTCTTTACCTTTATATTTATCAATTTTGAAGAGCAGTATTTAATCGTATTTAGTTGTATTCGTGTTTATGTTAATTTGTTTGTTAGTGAATTTTTAATATTTTTTATCTAAAATTTTATCGAATAATTATAAATGGTGGATAAATAAAACTTTTTAATTTTTTTTAAATTTATAACTGGACAACTAGAACCGAACTCCAAAATAGAAGATTGAGTTGGGTACCAATCCAACAAACTTTTGGCTTAAAAATAAAATCTCTCAACGCAGTTTCGATTTTAAATTTGATTCAAATTTTATCGGCCATTCTCTCTTGGATCGCTAGTTTTCCTCGCAGTGGTTAAATTTCTCTCTGTAGTCTTTAGAATCTTTTCCTCTTTTTCCTTGCAAATTTGAATCGATTTTCCCTCCATTATCTGACGGCAGAATCGGTAATCGCAATTGTATGTGTGCTTACGAAACATTGATCGGGTCGCAGGTTTTCTAATTCTAAACAATTAGTTCATAGATGCAGAACGAGGAGGGTAAAATCAGAGCTTTAAATTCCCAGAAAATGGTTCGTAATCTTATTATTATCGTCTAGCTTCGATGATCGCACTTGATTCATGGCTTATTGTGTCGCTGATGCAGCTCCGCAACGAATCGATTGATTACTTCCAAGGACCATGCTTCCGTCCAGATCAACATTGGGCATTTGGATGAAAATGGCATCTACACTGGCCAGTTTTCCACTTTTGCTCTCTGTGGTTTCCTTCGGGCACAGGTGATTGTTCTTTGCTTCTCTCTCTCTCTCGCACTCGTTATTGATGGATTTGTAGCGATAGGATGCGATCTAATCTGTAATACATTCGATCATTGACTTGGAACAGGACATATTAGTTTACTTCGACTCAGGATTGTTTAGGTATTTTTAAGTCCAATGAACTCAACTTGCTTATGATTTCATCCGTTGGTGTTTGATCTTAGTTCTCCTAGAAAAGGGTATGCAATTGACTATTGAGCATGGCTTATTCTTCTTCTGCTGGCTGTGTTTTTATATGCAACAACAAACACGTTTATTCATTCATCTGTGATTGTTGTTGCCTGTTACATTGTTAAGCACTTAGTTTATGAGCTGCTGTCCTAATTGAAGCTAATTTGACTCAAAAGTAAAGAACACAGAAGATTTATAGTTAGACTAAATTATAGCTCAAGTAAAGAAATTTTGAACATGGCTAAACTACATTCTATAGACGATAATCAAAATGCACTAAAAGAAAATGAGAAGAAAGGTAGAAGCCTGTAAAATTGTAACGGTCAAAGCTAACCGCTAGGAGATATTGTCCTCTTTAGCCTTTTCCTTTCGGGTTTCTCCTCAAAGTTTCTAAATCGCATCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTTGTTTTCCTCCCTCAATCGATGTGGGATCTGACAATCCACCCTCCTTCGTGCCAGCGATCTCGTTGGCACTCGTTTCCTTTTCCAATCGATGTGGGACTCCTCAATTCACTCCCCCTTTGGGGCCAGCATTTTTGCTGGTACACCGCCTCATGTCCAGCTCCCTTCGGGGTTCACCCTTCTCGCTGGCACATCGCCCGGCGTATGGCTCTAATACTATTTGTAACAACCCAAACTCACCGCCAATAGATATTGTCCTCTTTGGGCTTTCCCTTAGGTTTTTAAAACACGTTTGCAAATGAGAGGTTTCTACACCTTTATAAAAGAATGTTTTGTTCTTCTACCTAATTGAATGAATGCTTTGTTCCCCTTCTCAATCGATACGAAATGAAATGTCACCAAAATTGAGTCCGCAGATGGCTTTGATGTGATCGGCCTTTGTCCTCTAGCTTCCTCTTAAACGGTGAGAGCAGCCATTATTGAAGGATAAGCAGCCATTGCTCATAATTTTTCTGTCATTTGGATATGACATCGATGCTCCCAATTATTTTTCGTGCAACTGTCTTGAATCATGCTATAGAGTTCATCAATCACTATGAGATTGATGCTTCCTATGATCGCTTGTATCATGTCTGGCACCATATCAGTTTGTCACAATATTCAATTTTCATGTTCTTTATGTGGTTCCTCTCATAATCATTGGGCACACAGACGATAAAGAGTTCTATTACATACTTGTGGTGCTTTCTTTTATATTGTGTAGGGAGATGCCGACAGTGCAGTGGATCGGCTCTGGCAGAAGAAGAAACTCGAAGTTCATCAACAACAGAAGATTTAG

mRNA sequence

ATGCTAATCTCCGCAACGAATCGATTGATTACTTCCAAGGACCATGCTTCCGTCCAGATCAACATTGGGCATTTGGATGAAAATGGCATCTACACTGGCCAGTTTTCCACTTTTGCTCTCTGTGGTTTCCTTCGGGCACAGGGAGATGCCGACAGTGCAGTGGATCGGCTCTGGCAGAAGAAGAAACTCGAAGTTCATCAACAACAGAAGATTTAG

Coding sequence (CDS)

ATGCTAATCTCCGCAACGAATCGATTGATTACTTCCAAGGACCATGCTTCCGTCCAGATCAACATTGGGCATTTGGATGAAAATGGCATCTACACTGGCCAGTTTTCCACTTTTGCTCTCTGTGGTTTCCTTCGGGCACAGGGAGATGCCGACAGTGCAGTGGATCGGCTCTGGCAGAAGAAGAAACTCGAAGTTCATCAACAACAGAAGATTTAG

Protein sequence

MLISATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKLEVHQQQKI
Homology
[Close]
BLAST of CmoCh14G016580 vs. ExPASy Swiss-Prot
Match: Q9M337 (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.7e-27
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+
Sbjct: 18 SATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 64 EVHQQ 69
          E  QQ
Sbjct: 78 EAKQQ 82

[Close]
BLAST of CmoCh14G016580 vs. ExPASy Swiss-Prot
Match: Q3E902 (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-26
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+
Sbjct: 18 SATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 64 EVHQ 68
          E  Q
Sbjct: 78 EAKQ 81

[Close]
BLAST of CmoCh14G016580 vs. ExPASy Swiss-Prot
Match: P35687 (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.1e-25
Identity = 52/65 (80.00%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GF+RAQGDADSA+DRLWQK+K 
Sbjct: 18 SATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKA 77

Query: 64 EVHQQ 69
          EV QQ
Sbjct: 78 EVKQQ 82

[Close]
BLAST of CmoCh14G016580 vs. ExPASy Swiss-Prot
Match: Q41852 (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-23
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQGDADS++DRLWQKKK 
Sbjct: 18 SATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKA 77

Query: 64 EVHQ 68
          E+ Q
Sbjct: 78 EIKQ 81

[Close]
BLAST of CmoCh14G016580 vs. ExPASy Swiss-Prot
Match: Q54BN4 (40S ribosomal protein S21 OS=Dictyostelium discoideum OX=44689 GN=rps21 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-15
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKK 62
          SATNRLIT+KDHASVQINIGH++  GIY G+ + FA CGFLR  G +D+A++RL Q+K
Sbjct: 15 SATNRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNGQSDAALNRLAQQK 72

[Close]
BLAST of CmoCh14G016580 vs. ExPASy TrEMBL
Match: A0A6J1GFE6 (40S ribosomal protein S21 OS=Cucurbita moschata OX=3662 GN=LOC111453667 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.5e-27
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLW KKK+
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKV 77

Query: 64 EVHQQ 69
          EVHQQ
Sbjct: 78 EVHQQ 82

[Close]
BLAST of CmoCh14G016580 vs. ExPASy TrEMBL
Match: A0A6J1IJN4 (40S ribosomal protein S21 OS=Cucurbita maxima OX=3661 GN=LOC111474210 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGF+RAQGDADSA+DRLW KKK+
Sbjct: 18 SATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKV 77

Query: 64 EVHQQ 69
          EVHQQ
Sbjct: 78 EVHQQ 82

[Close]
BLAST of CmoCh14G016580 vs. ExPASy TrEMBL
Match: A0A1S4DSM1 (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLWQKKK+
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKV 77

Query: 64 EVHQQ 69
          EV QQ
Sbjct: 78 EVRQQ 82

[Close]
BLAST of CmoCh14G016580 vs. ExPASy TrEMBL
Match: A0A5D3CXC9 (40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001000 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLWQKKK+
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKV 77

Query: 64 EVHQQ 69
          EV QQ
Sbjct: 78 EVRQQ 82

[Close]
BLAST of CmoCh14G016580 vs. ExPASy TrEMBL
Match: A0A0A0L7W3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLWQKKK+
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKV 77

Query: 64 EVHQQ 69
          EV QQ
Sbjct: 78 EVRQQ 82

[Close]
BLAST of CmoCh14G016580 vs. NCBI nr
Match: KAG6582215.1 (40S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 6.9e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 4   SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
           SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL
Sbjct: 193 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 252

Query: 64  EVHQQQKI 72
           EVHQQQKI
Sbjct: 253 EVHQQQKI 260

[Close]
BLAST of CmoCh14G016580 vs. NCBI nr
Match: KAG7018613.1 (40S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 6.9e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL
Sbjct: 5  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 64

Query: 64 EVHQQQKI 72
          EVHQQQKI
Sbjct: 65 EVHQQQKI 72

[Close]
BLAST of CmoCh14G016580 vs. NCBI nr
Match: XP_022950628.1 (40S ribosomal protein S21-2-like [Cucurbita moschata] >KAG6597520.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 9.3e-27
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLW KKK+
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKV 77

Query: 64 EVHQQ 69
          EVHQQ
Sbjct: 78 EVHQQ 82

[Close]
BLAST of CmoCh14G016580 vs. NCBI nr
Match: XP_022973757.1 (40S ribosomal protein S21-2-like [Cucurbita maxima] >XP_022975174.1 40S ribosomal protein S21-2-like [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 60/65 (92.31%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLD+NGIYTGQFSTFALCGF+RAQGDADSA+DRLW KKK+
Sbjct: 18 SATNRLITSKDHASVQINIGHLDDNGIYTGQFSTFALCGFIRAQGDADSALDRLWHKKKV 77

Query: 64 EVHQQ 69
          EVHQQ
Sbjct: 78 EVHQQ 82

[Close]
BLAST of CmoCh14G016580 vs. NCBI nr
Match: XP_004134210.2 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_038879937.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906504.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906506.1 40S ribosomal protein S21-2 [Benincasa hispida] >KAA0049493.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa] >KGN57104.1 hypothetical protein Csa_010287 [Cucumis sativus] >TYK16172.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGF+RAQGDADSA+DRLWQKKK+
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKV 77

Query: 64 EVHQQ 69
          EV QQ
Sbjct: 78 EVRQQ 82

[Close]
BLAST of CmoCh14G016580 vs. TAIR 10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 120.2 bits (300), Expect = 6.9e-28
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+
Sbjct: 18 SATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 64 EVHQQ 69
          E  QQ
Sbjct: 78 EAKQQ 82

[Close]
BLAST of CmoCh14G016580 vs. TAIR 10
Match: AT3G53890.2 (Ribosomal protein S21e )

HSP 1 Score: 120.2 bits (300), Expect = 6.9e-28
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+
Sbjct: 18 SATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 64 EVHQQ 69
          E  QQ
Sbjct: 78 EAKQQ 82

[Close]
BLAST of CmoCh14G016580 vs. TAIR 10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-27
Identity = 55/64 (85.94%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 4  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFLRAQGDADSAVDRLWQKKKL 63
          SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQGDADS VDRLWQKKK+
Sbjct: 18 SATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKV 77

Query: 64 EVHQ 68
          E  Q
Sbjct: 78 EAKQ 81

The following BLAST results are available for this feature:
BLAST of CmoCh14G016580 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M3379.7e-2784.6240S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1[more]
Q3E9021.7e-2685.9440S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2[more]
P356879.1e-2580.0040S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3... [more]
Q418521.3e-2378.1340S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1[more]
Q54BN42.2e-1565.5240S ribosomal protein S21 OS=Dictyostelium discoideum OX=44689 GN=rps21 PE=3 SV=... [more]
BLAST of CmoCh14G016580 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GFE64.5e-2793.8540S ribosomal protein S21 OS=Cucurbita moschata OX=3662 GN=LOC111453667 PE=3 SV=... [more]
A0A6J1IJN41.0e-2692.3140S ribosomal protein S21 OS=Cucurbita maxima OX=3661 GN=LOC111474210 PE=3 SV=1[more]
A0A1S4DSM11.0e-2693.8540S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1[more]
A0A5D3CXC91.0e-2693.8540S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0L7W31.0e-2693.8540S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1[more]
BLAST of CmoCh14G016580 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6582215.16.9e-30100.0040S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7018613.16.9e-30100.0040S ribosomal protein S21-1, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
XP_022950628.19.3e-2793.8540S ribosomal protein S21-2-like [Cucurbita moschata] >KAG6597520.1 40S ribosoma... [more]
XP_022973757.12.1e-2692.3140S ribosomal protein S21-2-like [Cucurbita maxima] >XP_022975174.1 40S ribosoma... [more]
XP_004134210.22.1e-2693.8540S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S rib... [more]
BLAST of CmoCh14G016580 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53890.16.9e-2884.62Ribosomal protein S21e [more]
AT3G53890.26.9e-2884.62Ribosomal protein S21e [more]
AT5G27700.11.2e-2785.94Ribosomal protein S21e [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001931Ribosomal protein S21ePIRSFPIRSF002148RPS21ecoord: 2..71
e-value: 1.0E-26
score: 90.8
IPR001931Ribosomal protein S21ePFAMPF01249Ribosomal_S21ecoord: 4..63
e-value: 1.3E-26
score: 92.5
IPR001931Ribosomal protein S21ePANTHERPTHR1044240S RIBOSOMAL PROTEIN S21coord: 4..68
IPR038579Ribosomal protein S21e superfamilyGENE3D3.30.1230.20coord: 2..70
e-value: 1.8E-29
score: 103.5
NoneNo IPR availablePANTHERPTHR10442:SF1340S RIBOSOMAL PROTEIN S21coord: 4..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G016580.1CmoCh14G016580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome