CmoCh14G012750 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G012750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ankyrin repeat-containing protein NPR4-like
Location	Cmo_Chr14: 10694132 .. 10694775 (-)
RNA-Seq Expression	CmoCh14G012750
Synteny	CmoCh14G012750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGATTCACCCACAACCTATACCTTCTTCCATTTCTCCATATCAACCAAATCAAGAAATTAGCATTGTGATGCAATCTGAGGTTGATGCCTTTCAACCAACGCCCCTCCACCTTGCTTCCAAAAATGGAGACATGGACATCGTTTGAGCTTTTTTGTTGGAGAACAACACGAGTGCTTGCTTGGTTTACGATAACAACGGGTTCATTCCTCTCCATTATGAAGTAATTAGTGGACAAATCGAGATCATGCAAGAGCTTATTCATGCAAGACCAAAATCTGTATGGATGAAGCTCAACGACGGTCGGACTATTTTACATTTATGTGTAGAAAGTAACAATTTAGAGGGCAAGATTTCTAAATCATGAAGGTGAAGGTTTCCTAAATACAGTGGATGGCAAAGGAAATACTATTTTGGATGTATCAATGGTGCTCAAACAAAGAGAGGTAAGTAATTAAAGAAAATTTTAAATGAATTCTCTTTCATTATCATCAATTATATATCAATTTTTAATGAAAATCATCACAACTTATTTTCTTTGTAGATGGTAGAGTATTTATTTTTCTTGACAAACTTTACAGCCTCAAATGCTACGAAAGAAGGTACAGATTTACAAAAGACCAAGGCAAGAAAGCCTAA

mRNA sequence

ATGGAGGAGATTCACCCACAACCTATACCTTCTTCCATTTCTCCATATCAACCAAATCAAGAAATTAGCATTGTGATGCAATCTGAGGTTGATGCCTTTCAACCAACGCCCCTCCACCTTGCTTCCAAAAATGGAGACATGGACATCAACAACACGAGTGCTTGCTTGGTTTACGATAACAACGGGTTCATTCCTCTCCATTATGAAGTAATTAGTGGACAAATCGAGATCATGCAAGAGCTTATTCATGCAAGACCAAAATCTGTATGGATGAAGCTCAACGACGATGGTAGAGTATTTATTTTTCTTGACAAACTTTACAGCCTCAAATGCTACGAAAGAAGGTACAGATTTACAAAAGACCAAGGCAAGAAAGCCTAA

Coding sequence (CDS)

ATGGAGGAGATTCACCCACAACCTATACCTTCTTCCATTTCTCCATATCAACCAAATCAAGAAATTAGCATTGTGATGCAATCTGAGGTTGATGCCTTTCAACCAACGCCCCTCCACCTTGCTTCCAAAAATGGAGACATGGACATCAACAACACGAGTGCTTGCTTGGTTTACGATAACAACGGGTTCATTCCTCTCCATTATGAAGTAATTAGTGGACAAATCGAGATCATGCAAGAGCTTATTCATGCAAGACCAAAATCTGTATGGATGAAGCTCAACGACGATGGTAGAGTATTTATTTTTCTTGACAAACTTTACAGCCTCAAATGCTACGAAAGAAGGTACAGATTTACAAAAGACCAAGGCAAGAAAGCCTAA

Protein sequence

MEEIHPQPIPSSISPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDINNTSACLVYDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFLDKLYSLKCYERRYRFTKDQGKKA

Homology

[Close]

BLAST of CmoCh14G012750 vs. ExPASy TrEMBL
Match: A0A6J1GW32 (ankyrin repeat-containing protein NPR4-like OS=Cucurbita moschata OX=3662 GN=LOC111458019 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.1e-39
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MEEIHPQPIPSSISPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSA 60
           MEEIHPQPIPSS SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGD+D       NN SA
Sbjct: 1   MEEIHPQPIPSSNSPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNMSA 60

Query: 61  CLVYDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL 104
           CLVYDNNGFIPLHY VI+GQ+EIM+ELI A P+S+WMKLN DGR  + L
Sbjct: 61  CLVYDNNGFIPLHYAVINGQVEIMKELISATPQSIWMKLN-DGRTVLHL 108

[Close]

BLAST of CmoCh14G012750 vs. ExPASy TrEMBL
Match: A0A6J1IZU6 (ankyrin repeat-containing protein NPR4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479945 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 5   HPQPIPSSI-SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSACLV 64
           HP P  ++I      NQEI IVMQSEVDAFQPTPLHLASKNGD+D       NNTSACLV
Sbjct: 7   HPTPSFNAIPDDAAQNQEIRIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNTSACLV 66

Query: 65  YDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL----DKLYSLK 111
           YDNNGFIPLHY VI+GQ+EIM+ELI+ARP+S+WMKLN DGR  + L    D L S+K
Sbjct: 67  YDNNGFIPLHYAVINGQVEIMKELINARPQSIWMKLN-DGRTVLHLCVEGDHLESIK 122

[Close]

BLAST of CmoCh14G012750 vs. ExPASy TrEMBL
Match: A0A6J1IU53 (ankyrin repeat-containing protein NPR4-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111479945 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 5   HPQPIPSSI-SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSACLV 64
           HP P  ++I      NQEI IVMQSEVDAFQPTPLHLASKNGD+D       NNTSACLV
Sbjct: 7   HPTPSFNAIPDDAAQNQEIRIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNTSACLV 66

Query: 65  YDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL----DKLYSLK 111
           YDNNGFIPLHY VI+GQ+EIM+ELI+ARP+S+WMKLN DGR  + L    D L S+K
Sbjct: 67  YDNNGFIPLHYAVINGQVEIMKELINARPQSIWMKLN-DGRTVLHLCVEGDHLESIK 122

[Close]

BLAST of CmoCh14G012750 vs. ExPASy TrEMBL
Match: A0A6J1IX06 (ankyrin repeat-containing protein NPR4-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111479945 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 5   HPQPIPSSI-SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSACLV 64
           HP P  ++I      NQEI IVMQSEVDAFQPTPLHLASKNGD+D       NNTSACLV
Sbjct: 7   HPTPSFNAIPDDAAQNQEIRIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNTSACLV 66

Query: 65  YDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL----DKLYSLK 111
           YDNNGFIPLHY VI+GQ+EIM+ELI+ARP+S+WMKLN DGR  + L    D L S+K
Sbjct: 67  YDNNGFIPLHYAVINGQVEIMKELINARPQSIWMKLN-DGRTVLHLCVEGDHLESIK 122

[Close]

BLAST of CmoCh14G012750 vs. ExPASy TrEMBL
Match: A0A6J1GV64 (uncharacterized protein LOC111457477 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457477 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 71/106 (66.98%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 5   HPQPIPSSI-SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSACLV 64
           HP P  + I      NQEI IVMQSEVDAFQPTPLHLASKNGD+D       NNTSACLV
Sbjct: 7   HPTPSFNGIPDDAAQNQEIRIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNTSACLV 66

Query: 65  YDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL 104
           YDN+GFIPLHY VI+GQ++IM+E I+ARP+S+WMKLN DGR  + L
Sbjct: 67  YDNDGFIPLHYAVINGQVDIMKEFINARPQSIWMKLN-DGRTILHL 111

[Close]

BLAST of CmoCh14G012750 vs. NCBI nr
Match: XP_022956266.1 (ankyrin repeat-containing protein NPR4-like [Cucurbita moschata])

HSP 1 Score: 171.0 bits (432), Expect = 6.5e-39
Identity = 86/109 (78.90%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MEEIHPQPIPSSISPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSA 60
           MEEIHPQPIPSS SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGD+D       NN SA
Sbjct: 1   MEEIHPQPIPSSNSPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNMSA 60

Query: 61  CLVYDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL 104
           CLVYDNNGFIPLHY VI+GQ+EIM+ELI A P+S+WMKLN DGR  + L
Sbjct: 61  CLVYDNNGFIPLHYAVINGQVEIMKELISATPQSIWMKLN-DGRTVLHL 108

[Close]

BLAST of CmoCh14G012750 vs. NCBI nr
Match: KAG6581827.1 (Ankyrin repeat-containing protein BDA1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-36
Identity = 82/109 (75.23%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MEEIHPQPIPSSISPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSA 60
           MEEIHPQPIPSS SPYQPNQEI IVMQSEVDAFQPTPLHLASKNGD+D       NNTSA
Sbjct: 1   MEEIHPQPIPSSNSPYQPNQEIRIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNTSA 60

Query: 61  CLVYDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL 104
           CLVY+ +GFIPLHY VI+GQ+EIM+ELI+A P+S+WM LN DGR  + L
Sbjct: 61  CLVYNKDGFIPLHYVVINGQVEIMKELINATPQSIWMNLN-DGRTVLHL 108

[Close]

BLAST of CmoCh14G012750 vs. NCBI nr
Match: XP_022980641.1 (ankyrin repeat-containing protein NPR4-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 4.2e-30
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 5   HPQPIPSSI-SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSACLV 64
           HP P  ++I      NQEI IVMQSEVDAFQPTPLHLASKNGD+D       NNTSACLV
Sbjct: 7   HPTPSFNAIPDDAAQNQEIRIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNTSACLV 66

Query: 65  YDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL----DKLYSLK 111
           YDNNGFIPLHY VI+GQ+EIM+ELI+ARP+S+WMKLN DGR  + L    D L S+K
Sbjct: 67  YDNNGFIPLHYAVINGQVEIMKELINARPQSIWMKLN-DGRTVLHLCVEGDHLESIK 122

[Close]

BLAST of CmoCh14G012750 vs. NCBI nr
Match: XP_022980640.1 (ankyrin repeat-containing protein NPR4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 4.2e-30
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 5   HPQPIPSSI-SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSACLV 64
           HP P  ++I      NQEI IVMQSEVDAFQPTPLHLASKNGD+D       NNTSACLV
Sbjct: 7   HPTPSFNAIPDDAAQNQEIRIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNTSACLV 66

Query: 65  YDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL----DKLYSLK 111
           YDNNGFIPLHY VI+GQ+EIM+ELI+ARP+S+WMKLN DGR  + L    D L S+K
Sbjct: 67  YDNNGFIPLHYAVINGQVEIMKELINARPQSIWMKLN-DGRTVLHLCVEGDHLESIK 122

[Close]

BLAST of CmoCh14G012750 vs. NCBI nr
Match: XP_022980639.1 (ankyrin repeat-containing protein NPR4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 141.7 bits (356), Expect = 4.2e-30
Identity = 78/117 (66.67%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 5   HPQPIPSSI-SPYQPNQEISIVMQSEVDAFQPTPLHLASKNGDMDI------NNTSACLV 64
           HP P  ++I      NQEI IVMQSEVDAFQPTPLHLASKNGD+D       NNTSACLV
Sbjct: 7   HPTPSFNAIPDDAAQNQEIRIVMQSEVDAFQPTPLHLASKNGDIDTVRALLENNTSACLV 66

Query: 65  YDNNGFIPLHYEVISGQIEIMQELIHARPKSVWMKLNDDGRVFIFL----DKLYSLK 111
           YDNNGFIPLHY VI+GQ+EIM+ELI+ARP+S+WMKLN DGR  + L    D L S+K
Sbjct: 67  YDNNGFIPLHYAVINGQVEIMKELINARPQSIWMKLN-DGRTVLHLCVEGDHLESIK 122

[Close]

BLAST of CmoCh14G012750 vs. TAIR 10
Match: AT5G54710.1 (Ankyrin repeat family protein )

HSP 1 Score: 42.4 bits (98), Expect = 3.2e-04
Identity = 26/69 (37.68%), Postives = 36/69 (52.17%), Query Frame = 0


Query: 29  EVDAFQPTPLHLASKNG---------DMDINNTSACLVYDNNGFIPLHYEVISGQIEIMQ 88
           + D  Q T LH A K+G         D+D+N   A  V D +G  PLH  VI+G +EI++
Sbjct: 192 DADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKV-DKDGLTPLHRAVINGSVEILK 251

The following BLAST results are available for this feature:

BLAST of CmoCh14G012750 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G012750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GW32	3.1e-39	78.90	ankyrin repeat-containing protein NPR4-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IZU6	2.0e-30	66.67	ankyrin repeat-containing protein NPR4-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1IU53	2.0e-30	66.67	ankyrin repeat-containing protein NPR4-like isoform X3 OS=Cucurbita maxima OX=36...	[more]
A0A6J1IX06	2.0e-30	66.67	ankyrin repeat-containing protein NPR4-like isoform X2 OS=Cucurbita maxima OX=36...	[more]
A0A6J1GV64	1.1e-28	66.98	uncharacterized protein LOC111457477 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmoCh14G012750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956266.1	6.5e-39	78.90	ankyrin repeat-containing protein NPR4-like [Cucurbita moschata]	[more]
KAG6581827.1	1.0e-36	75.23	Ankyrin repeat-containing protein BDA1, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022980641.1	4.2e-30	66.67	ankyrin repeat-containing protein NPR4-like isoform X3 [Cucurbita maxima]	[more]
XP_022980640.1	4.2e-30	66.67	ankyrin repeat-containing protein NPR4-like isoform X2 [Cucurbita maxima]	[more]
XP_022980639.1	4.2e-30	66.67	ankyrin repeat-containing protein NPR4-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh14G012750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54710.1	3.2e-04	37.68	Ankyrin repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 22..89 e-value: 2.4E-6 score: 29.0
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 31..88
None	No IPR available	PANTHER	PTHR24128:SF56	ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE	coord: 27..94
None	No IPR available	PANTHER	PTHR24128	HOMEOBOX PROTEIN WARIAI	coord: 27..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G012750.1	CmoCh14G012750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane