CmoCh14G012080 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACTTGTCGTTCGTCTCCCCAGTGTATCCTTCGATCCAAAAGAGAGCTTTCAGTGGACGTAACCGATTTTGCACGGTGCGTAGGGAAGAGCCTTGTAGAAGAATGTTTCAATGTTTGGCAACCGTTGTTAGCCAAACATCTCAGGTTTCGTTCGTCTTCTTCTCCTTATTTTCCCATTTCCTTTTAATTTTCTGCTCTTCTCTCCATTTTGTTCATGCTCTTGGCATCTTACCAGACATATAATTACGGGTTGGAAACCAAAAAGAACGATCTTCTGGTTGCCGTTCAAGAAACACAACGGGGCCTCGTCGCATCATCTGATCAACGTTGTGCCATTGAGGACGCTCTGGTCTGCTTTCTTTTCTGTTTCTCTTTCTATTCTATACATAAATCATAATCCTTCAGCCTGATTCCATGTTGGTTCCAAGTAATGGTTGTAGGTCAATGTAGAAACGTATAACATGGGTCTTCCTATTGACCTGATGAAGTTGGATGGCACATGGCGGCTGCAGTATACTTCTGCTCCTGATGTTCTTATTCTCCTAGAAGCTGCAGCCAGGCTTCCTTTCTTTCAGGTTCTTACATCTCCTACTTCACACTGGCTGAAAAAATACTTGTATTTTCTTTTTAAAGTAGGCCATATTTTTGTTTTTGGATGAAGAATCAAATTTTCATTGAGAAAGAATGAAAGAATATAATGCAAGGGCATCTAAAATAACAAGTCCACAAAAAAGGTGGACATTCTCAATGAAGATATTTTAGTCAAGCACAATCAGATCTAACCTATATTACAAAAAGATTTCGTCACCGATGCCGAAAGAGAAACATAAAACTTAGTGAGGGTCCAAACATCACAAGGATCTCTCTCCAAACCTCTAAAGGTTTTATTGTTTTTTTCTCCCAATGACTCCTTTAAATAGCTCAAACATAGCTCGCCAAAGAAACCTCCCTTTGTTACAAAAGCGAGGGTGACGGAGGAATTCCTCGATCATCTCCCTATAATGTTAGTGTCTAGCAAATTAGACTCCAAATGCAACAAAGAAGTAATTCCAAATAGTCTGTGAAAACTTGGCTTCATAGGATATGATCCTGGTTTCTCTATGCATAGTGCAGGTTTAGAAGTGATTTTGAAATTGTCAAAACCACTTTTGCTATGTTCAAACTCACTTCGAAACATGCACTATATCATTCAATATCAATTTTAATTACATGAAACATGACCTAACAAAAGTGATTTTAACCATTTTAAACTCCCAAACAGCCCTAAATCCTCTTTCCCTGCTCTAATCATTTAAGTCCTCTCTGAGGAGAGGTTTACCGACTTCCACCTTGGTGAGCCACTATATCTTGTTGATCTAGGGATTTGTGTTTAGTGCAATCTTGTTTACTTTCTTTTGCCTAAAATTTTGTGCTTCCAAGGTATCAATGTTGGTATCTTTTTGTTATGGTTTTCGTTTTCCTATTGTTAGAGGAAAAATAACTTTTCTCATACTTATATTCTTATTGCATTTCTACTTTGTCATTTGGCTACACGTGACTCATGGCTGCACCGGCAGATTGGGCAAATCTTCCAGAAATTTGAATGTCGTGACAGTTCGAATGAAGGAATTGTCCGAAATGTGGTTCGCTGGAGTATCCCATCACTCTTAGAGGTATACCATAAACAAAGTATGGCAATCATGAATTGCAGTTATAAGCTAGACTGATGGTCTTTGGTGTCCGCTCATTTCCATTTGCTCTCATTTCAAGCCACTGTTATCAAACAAATCTAATAATATGCTGTCTTACCCTCCTAATTGAAATTAGAGAGGCTTGAACTTCCTCCTATTCTCTTTGAGCTTTTTGGTTCCTGTCTCTAATCTAACTCCTCACCCCAATGAGGAAAATGGTGAGAATCTAGTTGGTATTTGGTGGATACCTTGGTATTTTATAGAGCAATGCTTTATTTTTGGCCTTTCAGGAACAGGAAGGAGCAACTCTGCTTGTTTCTGCCAAATTTTCGGTTGTTTCTTTGCGTAATATCTACCTCGAATTTGAGGAGGTCAGTTTCTGCATCTGGTGTTGCTTTGCTTTCCTTTTGGTTTGCATCACCTTGTGAATATTAGATATGTGAGAATTGCTGGCCTGCAAAGAACCATGTATTTCTTCGAACATTTATTTGTGCTCGCTTTCTGTCCTCAACTAGTTAGATCTTTGATGGTTTTCTGGAGTTCCAAGTAGTTTCATTTGCCCTTGTTTCCAGTTCTCTGCATTTTAGATTCAATTGATGTGCTAAATTGCCCCTAATCCTGACCAAGAATTGTTATTTTTTACAGCAGTATTAAGATTACTTGAAATGACATGAATAGCAAGAAAAATAAACTTTTCAACTAGTTATGCTGGAACTTTTTGTAATATAATATCTGTATGAAGAACGTGTGAGAAACATTGAAGGGAAGGTAATTAGAGACATTTTTTTGGGTCTTCAAACTCTAATATCCTGGGCAAGGAAATTCCGACCGCCTCGTAGAGTGATTTATCTGCATCTTTAAATTCTTTGGGATACACTTCGAAAAGTATTGTAGTTGTGAGATATCTGAGAAATTTAATATCGTCTTGGAGAGATTGATTTATCTGTATCTGTAAATGCTTTGGAAACAGTTCTTAAGTATTTAGTATTTTGTAGTAGTGAGATATATGTGGATTGGAAACAGTTCTCAAGTATTTAGTATTTTGTAGTAGTGAGATATATGTGGATGTTATGTTGCAAGCTGTTTGTGGCAGATCAGTGTCCAAAATATAAAGATTAGCGAGGAGCTGCAGGCTTTAATTGCTCCAGCAATACTACCACGGTCATTCATAAGTCTTCAGGTAAACAACATTCAACTAAAACATTGTTGGTTGAAGCTTGATGTATACATACATACATGTTTGGCTGAAACACGAAATGACGATTCAAATGGTTAAATAAACGCTCAGATCCTGCAATTTCTTCGGGGGTTTCAAGCTCGGGTTCCTGTGAGGAATTCAGAGAGGTAAATCTATGTGTGTGACGGAATGGTAAGAATTGTTGTTATTAGATAATGATCCTAAGAATGGTTGGGTTGGGGGGTTGCAGGAGACGATCAGTTGGAGGACTGTATTACCTCTCATATTTGGACGGGAATATGCTGTTGGGTCGTGCGGTGGGTGGCGGCGGAGTTTTTGTGTTTACCAGAGCTCAACCTCTCCAGTGCTAAACCAGCCAGCAAAGAAACAGACTCTTACAAAATTTGATTAGTTCGCCCATTATCGTTATGGATATGGATTAAGGTTCATTGTTCTTTGATCTTGTACTCTACTAACTATTACCTAAGTATATAATTTTGTATGTAATTTTTGGTTCTCGTTCGTTTAA ATGGACTTGTCGTTCGTCTCCCCAGTGTATCCTTCGATCCAAAAGAGAGCTTTCAGTGGACGTAACCGATTTTGCACGGTGCGTAGGGAAGAGCCTTGTAGAAGAATGTTTCAATGTTTGGCAACCGTTGTTAGCCAAACATCTCAGACATATAATTACGGGTTGGAAACCAAAAAGAACGATCTTCTGGTTGCCGTTCAAGAAACACAACGGGGCCTCGTCGCATCATCTGATCAACGTTGTGCCATTGAGGACGCTCTGGTCAATGTAGAAACGTATAACATGGGTCTTCCTATTGACCTGATGAAGTTGGATGGCACATGGCGGCTGCAGTATACTTCTGCTCCTGATGTTCTTATTCTCCTAGAAGCTGCAGCCAGGCTTCCTTTCTTTCAGATTGGGCAAATCTTCCAGAAATTTGAATGTCGTGACAGTTCGAATGAAGGAATTGTCCGAAATGTGGTTCGCTGGAGTATCCCATCACTCTTAGAGGAACAGGAAGGAGCAACTCTGCTTGTTTCTGCCAAATTTTCGGTTGTTTCTTTGCGTAATATCTACCTCGAATTTGAGGAGATCAGTGTCCAAAATATAAAGATTAGCGAGGAGCTGCAGGCTTTAATTGCTCCAGCAATACTACCACGGTCATTCATAAGTCTTCAGATCCTGCAATTTCTTCGGGGGTTTCAAGCTCGGGTTCCTGTGAGGAATTCAGAGAGGAGACGATCAGTTGGAGGACTGTATTACCTCTCATATTTGGACGGGAATATGCTGTTGGGTCGTGCGGTGGGTGGCGGCGGAGTTTTTGTGTTTACCAGAGCTCAACCTCTCCAGTGCTAAACCAGCCAGCAAAGAAACAGACTCTTACAAAATTTGATTAGTTCGCCCATTATCGTTATGGATATGGATTAAGGTTCATTGTTCTTTGATCTTGTACTCTACTAACTATTACCTAAGTATATAATTTTGTATGTAATTTTTGGTTCTCGTTCGTTTAA ATGGACTTGTCGTTCGTCTCCCCAGTGTATCCTTCGATCCAAAAGAGAGCTTTCAGTGGACGTAACCGATTTTGCACGGTGCGTAGGGAAGAGCCTTGTAGAAGAATGTTTCAATGTTTGGCAACCGTTGTTAGCCAAACATCTCAGACATATAATTACGGGTTGGAAACCAAAAAGAACGATCTTCTGGTTGCCGTTCAAGAAACACAACGGGGCCTCGTCGCATCATCTGATCAACGTTGTGCCATTGAGGACGCTCTGGTCAATGTAGAAACGTATAACATGGGTCTTCCTATTGACCTGATGAAGTTGGATGGCACATGGCGGCTGCAGTATACTTCTGCTCCTGATGTTCTTATTCTCCTAGAAGCTGCAGCCAGGCTTCCTTTCTTTCAGATTGGGCAAATCTTCCAGAAATTTGAATGTCGTGACAGTTCGAATGAAGGAATTGTCCGAAATGTGGTTCGCTGGAGTATCCCATCACTCTTAGAGGAACAGGAAGGAGCAACTCTGCTTGTTTCTGCCAAATTTTCGGTTGTTTCTTTGCGTAATATCTACCTCGAATTTGAGGAGATCAGTGTCCAAAATATAAAGATTAGCGAGGAGCTGCAGGCTTTAATTGCTCCAGCAATACTACCACGGTCATTCATAAGTCTTCAGATCCTGCAATTTCTTCGGGGGTTTCAAGCTCGGGTTCCTGTGAGGAATTCAGAGAGGAGACGATCAGTTGGAGGACTGTATTACCTCTCATATTTGGACGGGAATATGCTGTTGGGTCGTGCGGTGGGTGGCGGCGGAGTTTTTGTGTTTACCAGAGCTCAACCTCTCCAGTGCTAA MDLSFVSPVYPSIQKRAFSGRNRFCTVRREEPCRRMFQCLATVVSQTSQTYNYGLETKKNDLLVAVQETQRGLVASSDQRCAIEDALVNVETYNMGLPIDLMKLDGTWRLQYTSAPDVLILLEAAARLPFFQIGQIFQKFECRDSSNEGIVRNVVRWSIPSLLEEQEGATLLVSAKFSVVSLRNIYLEFEEISVQNIKISEELQALIAPAILPRSFISLQILQFLRGFQARVPVRNSERRRSVGGLYYLSYLDGNMLLGRAVGGGGVFVFTRAQPLQC Homology
BLAST of CmoCh14G012080 vs. ExPASy Swiss-Prot
Match: Q8W4F1 (Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP10 PE=1 SV=1) HSP 1 Score: 336.7 bits (862), Expect = 2.6e-91 Identity = 175/250 (70.00%), Postives = 208/250 (83.20%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy Swiss-Prot
Match: Q94KU6 (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris OX=3711 GN=PAP2 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 7.4e-06 Identity = 59/234 (25.21%), Postives = 101/234 (43.16%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy Swiss-Prot
Match: O49629 (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP2 PE=1 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 1.3e-05 Identity = 56/235 (23.83%), Postives = 106/235 (45.11%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy Swiss-Prot
Match: Q9LW57 (Plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAP6 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.2e-05 Identity = 53/167 (31.74%), Postives = 72/167 (43.11%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy Swiss-Prot
Match: Q94FZ9 (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris OX=3711 GN=PAP1 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 4.8e-05 Identity = 60/231 (25.97%), Postives = 103/231 (44.59%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy TrEMBL
Match: A0A6J1GYC1 (probable plastid-lipid-associated protein 10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457959 PE=3 SV=1) HSP 1 Score: 546.6 bits (1407), Expect = 6.1e-152 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy TrEMBL
Match: A0A0A0L8Y5 (PAP_fibrillin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G640570 PE=3 SV=1) HSP 1 Score: 490.0 bits (1260), Expect = 6.7e-135 Identity = 248/278 (89.21%), Postives = 259/278 (93.17%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy TrEMBL
Match: A0A5D3DBT1 (Putative plastid-lipid-associated protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00770 PE=3 SV=1) HSP 1 Score: 478.8 bits (1231), Expect = 1.6e-131 Identity = 242/277 (87.36%), Postives = 256/277 (92.42%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy TrEMBL
Match: A0A1S3CN36 (probable plastid-lipid-associated protein 10, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502792 PE=3 SV=1) HSP 1 Score: 478.8 bits (1231), Expect = 1.6e-131 Identity = 242/277 (87.36%), Postives = 256/277 (92.42%), Query Frame = 0
BLAST of CmoCh14G012080 vs. ExPASy TrEMBL
Match: A0A6J1CVF1 (probable plastid-lipid-associated protein 10, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015130 PE=3 SV=1) HSP 1 Score: 477.6 bits (1228), Expect = 3.5e-131 Identity = 244/280 (87.14%), Postives = 261/280 (93.21%), Query Frame = 0
BLAST of CmoCh14G012080 vs. NCBI nr
Match: XP_022956189.1 (probable plastid-lipid-associated protein 10, chloroplastic [Cucurbita moschata]) HSP 1 Score: 546.6 bits (1407), Expect = 1.3e-151 Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0
BLAST of CmoCh14G012080 vs. NCBI nr
Match: XP_023527019.1 (probable plastid-lipid-associated protein 10, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 539.3 bits (1388), Expect = 2.0e-149 Identity = 274/278 (98.56%), Postives = 275/278 (98.92%), Query Frame = 0
BLAST of CmoCh14G012080 vs. NCBI nr
Match: XP_038897398.1 (probable plastid-lipid-associated protein 10, chloroplastic [Benincasa hispida] >XP_038897407.1 probable plastid-lipid-associated protein 10, chloroplastic [Benincasa hispida]) HSP 1 Score: 504.2 bits (1297), Expect = 7.1e-139 Identity = 255/278 (91.73%), Postives = 265/278 (95.32%), Query Frame = 0
BLAST of CmoCh14G012080 vs. NCBI nr
Match: XP_004144415.1 (probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Cucumis sativus] >XP_011651693.1 probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Cucumis sativus] >XP_011651694.1 probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Cucumis sativus] >KGN58415.1 hypothetical protein Csa_001902 [Cucumis sativus]) HSP 1 Score: 490.0 bits (1260), Expect = 1.4e-134 Identity = 248/278 (89.21%), Postives = 259/278 (93.17%), Query Frame = 0
BLAST of CmoCh14G012080 vs. NCBI nr
Match: XP_011651695.1 (probable plastid-lipid-associated protein 10, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 485.3 bits (1248), Expect = 3.4e-133 Identity = 248/278 (89.21%), Postives = 259/278 (93.17%), Query Frame = 0
BLAST of CmoCh14G012080 vs. TAIR 10
Match: AT2G46910.1 (Plastid-lipid associated protein PAP / fibrillin family protein ) HSP 1 Score: 336.7 bits (862), Expect = 1.8e-92 Identity = 175/250 (70.00%), Postives = 208/250 (83.20%), Query Frame = 0
BLAST of CmoCh14G012080 vs. TAIR 10
Match: AT4G22240.1 (Plastid-lipid associated protein PAP / fibrillin family protein ) HSP 1 Score: 52.0 bits (123), Expect = 9.0e-07 Identity = 56/235 (23.83%), Postives = 106/235 (45.11%), Query Frame = 0
BLAST of CmoCh14G012080 vs. TAIR 10
Match: AT3G23400.1 (Plastid-lipid associated protein PAP / fibrillin family protein ) HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06 Identity = 53/167 (31.74%), Postives = 72/167 (43.11%), Query Frame = 0
BLAST of CmoCh14G012080 vs. TAIR 10
Match: AT4G04020.1 (fibrillin ) HSP 1 Score: 47.0 bits (110), Expect = 2.9e-05 Identity = 55/231 (23.81%), Postives = 102/231 (44.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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