CmoCh14G011230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G011230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase
Location	Cmo_Chr14: 7814920 .. 7818695 (-)
RNA-Seq Expression	CmoCh14G011230
Synteny	CmoCh14G011230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTAGCATGCTGATTTTTGGACGCTTGATGGTCTCGATGGACCCTTTTGAAGTTAGATACTTTTTATGTTTTTATTCCTGCATTGCACCTTGTAGGTTCTCTATTTTTCAGGACTACGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTTATGGTGCTAGCTTGCTGATTTTTGGATGCTTGATGGTCTCGAGCTATCCTTTTGAAGTTCAGGTACTTTTCTTGTTTTTATTCTTGTGTTACACCTTTTAGTTGCTCTATTCCTCGGGACTAGGAGTAGGAGAAATGGAAAGTGATTTTTTTTATTGCTTATAGTGCTAGCATGCTGATTTTTGGACGCTTAATGATCTCGATCGATCATTTTGAAGTTCAAGTACTTTTCTTATTTTTATTTTTGCGTGCACCTTGTAGTTGCTCTAAGAATTCCTCTTCTAGGTGGGATGCTCTTCACCATGTATCCTTTGCAGGATGTCATGTTTGGCCTCATGTTTCCCTCACCTAGAAGAGATGCCCTGCACTATGTTACGGGTACCCAAAAGATTTGCAGGATGCCATGTTCATGTATGTACCGAGCACGTGACCTTTATGATCTATCATGGGGAGTAGTCTAGGGCCACGATGGAACAAGAATAGAGCAAGTTACCTTAGCCACAAATCAAAAACCTCCTTAGACCTCCCATGATACAACATGCTCATGACTTAGACTACGCTGCTTGGAATGCATGAAGCTTGAGCATAGGTATTCAGATTGTATCATAGGGCAAGCCCTTGATGTAGGATTAGACTACATCGCTTGAAATCTAAGAAGCCTTGGATTTAGGTTTTCATACTATGCCATTTGGAACGTTATGAAGCCTTGGACATAAGTTAAGTAGATCGTATCGAAGGGCAAGCCCTAAGATGCGGGTTAAGACAACGTTGCTTGGAACGCATGAAGCCTTGGACACAGGATTGTCAGGCGCATGGTTGTGTCATAAATCCTAGGGGGAGTGTCTTAGAGAACGAACCAAGAACAGAACAAGAACCTAGAAAGTACCAAGAACAAGTGAAAGATCAAGGACTAGAACATGGATCAAGATCCTAATTCTAAGGAAAGAACCAAGAACAAAGGACCAAAAACCAAGAACCAAGAACCATAGTACTAACGCCCTTAAAGGAAAACCAAGGTTTTAGAATTCAAGGACCAAGGTCTTTAGGATAGATCAAAGTAAGAGCCCCAAGTCAAGAACAAGAACTAGAGGGCCTAAGTACTTACAACAAGAACAAAATAGGAACAAGAACAAGACAAGAATAAAGAATGTGGTACCTTAGCATATCAAGGACACGATTAAGAGCCTACAAGTAGGCTACTTACTGAGTTTTTGTACTCATTCCTTATTCTCCATTTTTTTGCAGGTGATAAGGAGCTGGTCGAGGTCGGTAGCGGACTCTAGAGCAGGTGCCATAGACAAACCTCATTGGTCGTCCTCAACCTTTTTGTTTTAAAATTTTTTTGTGTCCATTCCTTATTTTGTGTTTTAACCATTATGTCATACATTAAATTACTAATGTGTGCGCGGTATAATGTAAATTATATTTTAAGTTTTAATTGTTTTATTTCGCGAAAAATTTACCCATCTTTTAGAGTCATCGAGTCAGCCTAGTCCTTATAATTTTGGATTCAGGTGCATCGTTTCATTCATCTCCAAATCAGGAATTATTTCAAAATTTCAAATTAAAATTTTTTGGGAAGGTGTATCTTGCCGACAACAAAACCTTGGAGATTGAAGGAAAGTGAGATGTTTGCATACAAACTTCAGCAGAAAATCAATGGACATTAATGGATGTCAAATATATTCCTGGTCTCGAGAAGAACCTGATCTCTATTGGTCATTTGGATAGCACAGGTTATGCAGCTGAGTTTGGAAAGAGTTTGTGGAAGATTGTGAAGGGTGCCATAGTGGTAGCTCGTGGCACAAAATCTGGAACCCTATACGCCACTGCACGGTGTATAAACATAACACCTGTTGCTGAGAGTGCTTCAAATTCAAGTCTATGACATAATAGACTTGGACATATGAGCATTAATGAAATGAAGATGCTGGCTGTGAAATGAGTTTTGGAAGGTCTGAAATTTGTTGATATGAATCCTGGTGAGAATTGTGTTATGAGCAAGCAGAAACGAGTTAGTTTCACAAAGACTGTCAAATAATTGAAGAAAGGTTCCGAGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAATAATTCACAGGGTGATGTTGTTGCAGATACTCAAGAAATTTCTGAGAATGTTGCTGAGGAATCAGAAGCGGAGCAAGTGACACATGAGTAGATGTTGAGAAGATCATCCAAGACTATTAGAATATCAAATAGGTATTCACTTTCATTATACTATCTATTGCTTACTATGAAGGGGAACCAAAGTCCTTTGATGAAATCCTATAGTTGGAGAATACAACCAAGTGGAAGCAAGCCATGGATGATGAGATGTCTTGTTTTTATTCCTCAGTTGTAGTTGCTTTATTTCTCAGGACTATGAGCAGGAGAAATGGAACATGGTTGTTTGATTGTTTATGGTGCTAGCATGTTGATTTTTGGACATTTAATGGTCTCGAGCGATCCTTTTGAAATTCAGGTACTTTTCTTGTTTTTATTCATGCATTGCACCTTGTATTGCTCTATTTCTCAAGACTTCGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTCATGGTGCTAACATGCTTATTTTTTAACACTTAATGGTCTCGAGCGATTCTTTTGAAGTTTAGGTACTTTTCTTGTTTTTATTCGTGTGTTGCATGCTTCTGATTTAGTGTTACAACAAATGAAGTATAAGCATTTTTTATTTTCACGTATGTAAGGTCTAGCGTGGCTCAACCACATGAGGCTTTATTCCCATCATCATATCAAGTCATCTCATCATCATGCATCTTACATTATCCTATTAAGTTATCTCATCATCATTATCATGTCATCGTCATGTCATCATCTCAAATCATCATATACATCATTACACCATCATATAGCATCATTACATCATCATATAATACCATTCAAACATCATCACATAATCTCGTCACATCATCATACAAAATCATTACATCATCACATAACATAAAGCATAAATGACACGTGCCAGGACCACTAGGCATGTGTCACTAGTCATAAGGAAAGTCTTCCGACTGAGACGATAGTAAGACCACTTACTTGGTTAGCCTTAGCCGTCGTTCTCCCTAAATACGAATGCTTGATTACGTCTCTCGAAGTTGCCCAAGTGACGTCGATGTGCGCCCTATTAGAAAAATCATCTAATTTCCTTAGTAATTCTAATTTCTTAGCAAAACTTAACTTATATTTTGAAATCGGGCTTTATATTGACCTTCAATTAAAAAAAAGGTCAATATCAGCTCCAGAAGGGTAAAAAAATGTAAGGAACCATGTGAGAATTGTCAGCCCAAGCCGAGCTGAGTCAAGCCGACAAACCTGAAGGGAGTCGTTGGTTGCAGGCACAACATGTGTCAAGGGGAGGAGCTGGTGGGTCATTCTTCTCCCCCACAACTTTTTCGTGATTTCAAACTCGCTGATGTCATTTCCATCGCCGTTTTCCTTTCTCCTCAATTCATTGTGAGTCCTACTTGGCTTGTCTCACGCTCCTACGGTGTTGTAATGTCTCAGACGTACCTACAACACAGATCTATTTACTTACAAATACAACGAGGCCAAGTTAGTTGCGAGTGA

mRNA sequence

ATGGTGGTTCTCTATTTTTCAGGACTACGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTTATGGTGCTAGCTTGCTGATTTTTGGATGCTTGATGGTCTCGAGCTATCCTTTTGAAGTTCAGGGAGTCGTTGGTTGCAGGCACAACATGTGTCAAGGGGAGGAGCTGGTGGGTCATTCTTCTCCCCCACAACTTTTTCGTGATTTCAAACTCGCTGATGTCATTTCCATCGCCGTTTTCCTTTCTCCTCAATTCATTGTGAGTCCTACTTGGCTTGTCTCACGCTCCTACGGTGTTGTAATGTCTCAGACGTACCTACAACACAGATCTATTTACTTACAAATACAACGAGGCCAAGTTAGTTGCGAGTGA

Coding sequence (CDS)

ATGGTGGTTCTCTATTTTTCAGGACTACGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTTATGGTGCTAGCTTGCTGATTTTTGGATGCTTGATGGTCTCGAGCTATCCTTTTGAAGTTCAGGGAGTCGTTGGTTGCAGGCACAACATGTGTCAAGGGGAGGAGCTGGTGGGTCATTCTTCTCCCCCACAACTTTTTCGTGATTTCAAACTCGCTGATGTCATTTCCATCGCCGTTTTCCTTTCTCCTCAATTCATTGTGAGTCCTACTTGGCTTGTCTCACGCTCCTACGGTGTTGTAATGTCTCAGACGTACCTACAACACAGATCTATTTACTTACAAATACAACGAGGCCAAGTTAGTTGCGAGTGA

Protein sequence

MVVLYFSGLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRHNMCQGEELVGHSSPPQLFRDFKLADVISIAVFLSPQFIVSPTWLVSRSYGVVMSQTYLQHRSIYLQIQRGQVSCE

Homology

[Close]

BLAST of CmoCh14G011230 vs. ExPASy Swiss-Prot
Match: F4KD38 (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPC2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-09
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
            GLRVGEMERDCLIAYGAS+LI+  LM+SS PFEVQ    C
Sbjct: 1068 GLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRAC 1107

[Close]

BLAST of CmoCh14G011230 vs. ExPASy Swiss-Prot
Match: P25167 (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 GN=RpIII128 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 6.7e-07
Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 0


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRH-------NMCQGEELVGH 67
            GLR+GEMERDCLI+YGAS+LI   LM+SS  FEV     C         + CQ    V  
Sbjct: 1050 GLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSK 1109

Query: 68   SSPPQ----LFRDFKLADVI 77
             S P     LF++    +V+
Sbjct: 1110 ISMPYACKLLFQELTSMNVV 1129

[Close]

BLAST of CmoCh14G011230 vs. ExPASy Swiss-Prot
Match: Q9NW08 (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 7.4e-06
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEV 42
            GLR+GEMERDCLI YGAS+L+   LM+SS  FEV
Sbjct: 1044 GLRLGEMERDCLIGYGASMLLLERLMISSDAFEV 1077

[Close]

BLAST of CmoCh14G011230 vs. ExPASy Swiss-Prot
Match: P59470 (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 7.4e-06
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEV 42
            GLR+GEMERDCLI YGAS+L+   LM+SS  FEV
Sbjct: 1044 GLRLGEMERDCLIGYGASMLLLERLMISSDAFEV 1077

[Close]

BLAST of CmoCh14G011230 vs. ExPASy Swiss-Prot
Match: P22276 (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RET1 PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 9.7e-06
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRHNMCQGEELVGHS 62
            GLR+GEMERDC+IAYGAS L+   LM+SS  FEV        ++C    L+G+S
Sbjct: 1059 GLRLGEMERDCVIAYGASQLLLERLMISSDAFEV--------DVCDKCGLMGYS 1104

[Close]

BLAST of CmoCh14G011230 vs. ExPASy TrEMBL
Match: A0A6P6GLI1 (DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 124 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 163

[Close]

BLAST of CmoCh14G011230 vs. ExPASy TrEMBL
Match: A0A6P6GKM6 (DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 131 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 170

[Close]

BLAST of CmoCh14G011230 vs. ExPASy TrEMBL
Match: A0A6P6GKR2 (DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 119 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 158

[Close]

BLAST of CmoCh14G011230 vs. ExPASy TrEMBL
Match: A0A6P6GKP7 (DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 130 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 169

[Close]

BLAST of CmoCh14G011230 vs. ExPASy TrEMBL
Match: A0A6P6GKN1 (DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 116 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 155

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: XP_024934661.1 (DNA-directed RNA polymerase III subunit 2-like isoform X4 [Ziziphus jujuba])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 119 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 158

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: XP_024934662.1 (DNA-directed RNA polymerase III subunit 2-like isoform X5 [Ziziphus jujuba])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 116 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 155

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: XP_024934656.1 (DNA-directed RNA polymerase III subunit 2-like isoform X1 [Ziziphus jujuba] >XP_024934657.1 DNA-directed RNA polymerase III subunit 2-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 131 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 170

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: XP_024934658.1 (DNA-directed RNA polymerase III subunit 2-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 130 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 169

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: XP_024934659.1 (DNA-directed RNA polymerase III subunit 2-like isoform X3 [Ziziphus jujuba] >XP_024934660.1 DNA-directed RNA polymerase III subunit 2-like isoform X3 [Ziziphus jujuba])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-07
Identity = 32/40 (80.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
           GLR GEME DCLIAYGASLLI GCLM+SS PFEVQG   C
Sbjct: 124 GLRGGEMECDCLIAYGASLLILGCLMISSDPFEVQGRRTC 163

[Close]

BLAST of CmoCh14G011230 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-10
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
            GLRVGEMERDCLIAYGAS+LI+  LM+SS PFEVQ    C
Sbjct: 1068 GLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRAC 1107

The following BLAST results are available for this feature:

BLAST of CmoCh14G011230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KD38	5.5e-09	75.00	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRP...	[more]
P25167	6.7e-07	42.50	DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 ...	[more]
Q9NW08	7.4e-06	70.59	DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B P...	[more]
P59470	7.4e-06	70.59	DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b ...	[more]
P22276	9.7e-06	51.85	DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of CmoCh14G011230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P6GLI1	1.8e-07	80.00	DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV...	[more]
A0A6P6GKM6	1.8e-07	80.00	DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV...	[more]
A0A6P6GKR2	1.8e-07	80.00	DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV...	[more]
A0A6P6GKP7	1.8e-07	80.00	DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV...	[more]
A0A6P6GKN1	1.8e-07	80.00	DNA-directed RNA polymerase OS=Ziziphus jujuba OX=326968 GN=LOC107431511 PE=3 SV...	[more]

BLAST of CmoCh14G011230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024934661.1	3.8e-07	80.00	DNA-directed RNA polymerase III subunit 2-like isoform X4 [Ziziphus jujuba]	[more]
XP_024934662.1	3.8e-07	80.00	DNA-directed RNA polymerase III subunit 2-like isoform X5 [Ziziphus jujuba]	[more]
XP_024934656.1	3.8e-07	80.00	DNA-directed RNA polymerase III subunit 2-like isoform X1 [Ziziphus jujuba] >XP_...	[more]
XP_024934658.1	3.8e-07	80.00	DNA-directed RNA polymerase III subunit 2-like isoform X2 [Ziziphus jujuba]	[more]
XP_024934659.1	3.8e-07	80.00	DNA-directed RNA polymerase III subunit 2-like isoform X3 [Ziziphus jujuba] >XP_...	[more]

BLAST of CmoCh14G011230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45140.1	3.9e-10	75.00	nuclear RNA polymerase C2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 8..50 e-value: 6.0E-10 score: 39.4
None	No IPR available	GENE3D	3.90.1800.10	RNA polymerase alpha subunit dimerisation domain	coord: 6..72 e-value: 3.7E-10 score: 42.0
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 8..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G011230.1	CmoCh14G011230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0032549	ribonucleoside binding