CmoCh14G010610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G010610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr14: 5819548 .. 5819835 (-)
RNA-Seq Expression	CmoCh14G010610
Synteny	CmoCh14G010610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCGCTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGA

mRNA sequence

ATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCGCTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGA

Coding sequence (CDS)

ATGGTTCTTGAGAGCATTCTATCTTCTCCTCATAGGAGGCACCCACCATTTAGAAAACAGTTTCCTGCAAATGAGTTGGGCAGTTGGTCCGCTCTCTTCAATCGACATCGCTTCCTCTTAACCGCACTGGCACTCTTGACTTTACTTTGCACAATCTATCTTTACTTTGCTATCACATTAGGGGCTGCTGTGTCGTCTTGTTCGGGTTTGACTGGAGCTCAAAAGGAGTTGTGTCGTCTGGAGCATGCTGAAGCTTCTCTGGGTAAAGGCAAATTCAAATTTCTATGA

Protein sequence

MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITLGAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL

Homology

[Close]

BLAST of CmoCh14G010610 vs. ExPASy TrEMBL
Match: A0A6J1F9I3 (uncharacterized protein LOC111442048 OS=Cucurbita moschata OX=3662 GN=LOC111442048 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL
Sbjct: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60

Query: 61 GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 96
          GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL
Sbjct: 61 GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 95

[Close]

BLAST of CmoCh14G010610 vs. ExPASy TrEMBL
Match: A0A6J1J7R5 (uncharacterized protein LOC111482039 OS=Cucurbita maxima OX=3661 GN=LOC111482039 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.3e-44
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVLESILSSPHRRHPPFRKQFPANELGSWS LFNRHRFLLTALALLTLLCTIYLYFAITL
Sbjct: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSTLFNRHRFLLTALALLTLLCTIYLYFAITL 60

Query: 61 GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 96
          GAAVSSCSGLTGAQ+ELCRLEHAEASLGKGKFKFL
Sbjct: 61 GAAVSSCSGLTGAQRELCRLEHAEASLGKGKFKFL 95

[Close]

BLAST of CmoCh14G010610 vs. ExPASy TrEMBL
Match: A0A6J1DJ35 (uncharacterized protein LOC111020959 OS=Momordica charantia OX=3673 GN=LOC111020959 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.8e-38
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+SIL+SPHRR P FRKQFPANELGSWS LFNRHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSVLFNRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 96
          GA  SSCSGLTGAQKELCR+EHA+ASL KGK KFL
Sbjct: 61 GATASSCSGLTGAQKELCRMEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh14G010610 vs. ExPASy TrEMBL
Match: A0A0A0L9L6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 81/95 (85.26%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+SIL+SPHRR P FRKQFPANELGSWS LF RHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPHRRSPSFRKQFPANELGSWSTLFKRHRFLLTALALLTFLCTIYLYFAITL 60

Query: 61 GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 96
          GA  SSCSGLTG Q+ELCRLEHA+ASL KGK KFL
Sbjct: 61 GATASSCSGLTGTQRELCRLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh14G010610 vs. ExPASy TrEMBL
Match: A0A6J1GA22 (uncharacterized protein LOC111452323 OS=Cucurbita moschata OX=3662 GN=LOC111452323 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+SIL+SP RR P FRKQFPANELGSWS LFNRHRFLLTALALLT LCTIYLYFAITL
Sbjct: 1  MVLDSILASPRRRTPTFRKQFPANELGSWSTLFNRHRFLLTALALLTCLCTIYLYFAITL 60

Query: 61 GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKFL 96
          GA  SSCSGLTGAQKELC LEHA+ASL KGK KFL
Sbjct: 61 GATASSCSGLTGAQKELCHLEHAKASLAKGKLKFL 95

[Close]

BLAST of CmoCh14G010610 vs. TAIR 10
Match: AT1G16170.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 4.0e-23
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+ ++SSP RR    +KQ+  +ELGSWS L  RH++LLTALALL  LCT+YLYFA+TL
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW--DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTL 60

Query: 61 GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 95
          GA  SSC GLTG  K +C+L+  +A L KGK KF
Sbjct: 61 GARHSSCYGLTGKDKAMCQLQLVQA-LSKGKLKF 91

[Close]

BLAST of CmoCh14G010610 vs. TAIR 10
Match: AT1G79660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 9.9e-22
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MVLESILSSPHRRHPPFRKQFPANELGSWSALFNRHRFLLTALALLTLLCTIYLYFAITL 60
          MVL+ I+SSP RR    +KQ+  ++LGS S +  RHRFLLTA+ LL  LCTIY+YFA+TL
Sbjct: 1  MVLDGIVSSPLRRPHALKKQW--DDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTL 60

Query: 61 GAAVSSCSGLTGAQKELCRLEHAEASLGKGKFKF 95
          GA    CSG+TG  K +C++EH +AS   GK KF
Sbjct: 61 GARHLLCSGMTGKDKAMCQMEHIQASFSNGKLKF 92

The following BLAST results are available for this feature:

BLAST of CmoCh14G010610 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G010610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9I3	1.4e-44	100.00	uncharacterized protein LOC111442048 OS=Cucurbita moschata OX=3662 GN=LOC1114420...	[more]
A0A6J1J7R5	9.3e-44	97.89	uncharacterized protein LOC111482039 OS=Cucurbita maxima OX=3661 GN=LOC111482039...	[more]
A0A6J1DJ35	5.8e-38	87.37	uncharacterized protein LOC111020959 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L9L6	1.1e-36	85.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710730 PE=4 SV=1	[more]
A0A6J1GA22	1.9e-36	86.32	uncharacterized protein LOC111452323 OS=Cucurbita moschata OX=3662 GN=LOC1114523...	[more]

BLAST of CmoCh14G010610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16170.1	4.0e-23	59.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G79660.1	9.9e-22	55.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774	EPHRIN-A3 PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G010610.1	CmoCh14G010610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome