CmoCh14G010230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G010230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	TPT domain-containing protein
Location	Cmo_Chr14: 5570330 .. 5570713 (-)
RNA-Seq Expression	CmoCh14G010230
Synteny	CmoCh14G010230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTATTTCACAAGGACGAAGAATCAAAGAACTACGTGGGGTGGGAATGGTGTTAGGAGTCATCCTATCTGGCTATCTCTACCTTGTCTAGCTTGTCAGATCTCTAATTTCTGGACTTCCACTGATGAGTTGTTATTTAGAAAGTTCTTTATTTTGGGAGGACGTTGAAATGTGTGGTTCAGAAGATATTGTTGACCTCGGAGGCTGAGAAACGTCACTCTATGAAATTGTTGTATATGGCTGCCTCTAATGGCTGCTATAATTTGCTTCCTATTAGTCTTTGTATTGAAGGGAATGTTGGTGCCATTACTGTCGATGAAGCTGGAGGAATTCGTTTATTGTGTTCTTATTGCTTGGCAATGCTACGATGGCTTATTTAG

mRNA sequence

ATGAAAGTTCTTTATTTTGGGAGGACGTTGAAATGTGTGGTTCAGAAGATATTGTTGACCTCGGAGGCTGAGAAACGTCACTCTATGAAATTGTTGTATATGGCTGCCTCTAATGGCTGCTATAATTTGCTTCCTATTAGTCTTTGTATTGAAGGGAATGTTGGTGCCATTACTGTCGATGAAGCTGGAGGAATTCGTTTATTGTGTTCTTATTGCTTGGCAATGCTACGATGGCTTATTTAG

Coding sequence (CDS)

ATGAAAGTTCTTTATTTTGGGAGGACGTTGAAATGTGTGGTTCAGAAGATATTGTTGACCTCGGAGGCTGAGAAACGTCACTCTATGAAATTGTTGTATATGGCTGCCTCTAATGGCTGCTATAATTTGCTTCCTATTAGTCTTTGTATTGAAGGGAATGTTGGTGCCATTACTGTCGATGAAGCTGGAGGAATTCGTTTATTGTGTTCTTATTGCTTGGCAATGCTACGATGGCTTATTTAG

Protein sequence

MKVLYFGRTLKCVVQKILLTSEAEKRHSMKLLYMAASNGCYNLLPISLCIEGNVGAITVDEAGGIRLLCSYCLAMLRWLI

Homology

[Close]

BLAST of CmoCh14G010230 vs. ExPASy Swiss-Prot
Match: Q9LDH3 (Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thaliana OX=3702 GN=At1g12500 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-07
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 7   GRTLKCVVQKILLTSEAEKRHSMK-LLYMAASNGCYNLLPISLCIEGNVGAITVDEA 63
           GR LK VVQ I+LTSE+EK HSM  LLYMA    C  LLP +L IEGNV  + +++A
Sbjct: 216 GRALKSVVQGIILTSESEKLHSMNLLLYMAPMAACI-LLPFTLYIEGNVLRVLIEKA 271

[Close]

BLAST of CmoCh14G010230 vs. ExPASy TrEMBL
Match: A0A6J1L284 (probable sugar phosphate/phosphate translocator At1g12500 OS=Cucurbita maxima OX=3661 GN=LOC111498435 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 7   GRTLKCVVQKILLTSEAEKRHSMKLLYMAASNGCYNLLPISLCIEGNVGAITVDEAGG 65
           GR LK VVQ ILLTSEAEK HSM LL   A      LLP SL IEGNV AITV++A G
Sbjct: 213 GRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAAMILLPFSLYIEGNVAAITVEKARG 270

[Close]

BLAST of CmoCh14G010230 vs. ExPASy TrEMBL
Match: A0A5D3D7A0 (Putative sugar phosphate/phosphate translocator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001110 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 7   GRTLKCVVQKILLTSEAEKRHSMKLLYMAASNGCYNLLPISLCIEGNVGAITVDEAGG 65
           GR LK VVQ ILLTSEAEK HSM LL   A      LLP SL IEGNV AITV++A G
Sbjct: 214 GRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAAMILLPFSLYIEGNVAAITVEKARG 271

[Close]

BLAST of CmoCh14G010230 vs. ExPASy TrEMBL
Match: A0A6J1DFQ0 (probable sugar phosphate/phosphate translocator At1g12500 OS=Momordica charantia OX=3673 GN=LOC111020394 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 7   GRTLKCVVQKILLTSEAEKRHSMKLLYMAASNGCYNLLPISLCIEGNVGAITVDEAGG 65
           GR LK VVQ ILLTSEAEK HSM LL   A      LLP SL IEGNV AITV++A G
Sbjct: 214 GRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAALILLPFSLYIEGNVAAITVEKARG 271

[Close]

BLAST of CmoCh14G010230 vs. ExPASy TrEMBL
Match: A0A6J1GDD9 (probable sugar phosphate/phosphate translocator At1g12500 OS=Cucurbita moschata OX=3662 GN=LOC111453154 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 7   GRTLKCVVQKILLTSEAEKRHSMKLLYMAASNGCYNLLPISLCIEGNVGAITVDEAGG 65
           GR LK VVQ ILLTSEAEK HSM LL   A      LLP SL IEGNV AITV++A G
Sbjct: 213 GRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAAMILLPFSLYIEGNVAAITVEKARG 270

[Close]

BLAST of CmoCh14G010230 vs. ExPASy TrEMBL
Match: A0A1S3BLI7 (probable sugar phosphate/phosphate translocator At1g12500 OS=Cucumis melo OX=3656 GN=LOC103490954 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.1e-08
Identity = 38/58 (65.52%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 7   GRTLKCVVQKILLTSEAEKRHSMKLLYMAASNGCYNLLPISLCIEGNVGAITVDEAGG 65
           GR LK VVQ ILLTSEAEK HSM LL   A      LLP SL IEGNV AITV++A G
Sbjct: 214 GRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAAMILLPFSLYIEGNVAAITVEKARG 271

[Close]

BLAST of CmoCh14G010230 vs. TAIR 10
Match: AT1G12500.1 (Nucleotide-sugar transporter family protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 7   GRTLKCVVQKILLTSEAEKRHSMK-LLYMAASNGCYNLLPISLCIEGNVGAITVDEA 63
           GR LK VVQ I+LTSE+EK HSM  LLYMA    C  LLP +L IEGNV  + +++A
Sbjct: 216 GRALKSVVQGIILTSESEKLHSMNLLLYMAPMAACI-LLPFTLYIEGNVLRVLIEKA 271

[Close]

BLAST of CmoCh14G010230 vs. TAIR 10
Match: AT3G11320.1 (Nucleotide-sugar transporter family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 8   RTLKCVVQKILLTSEAEKRHSMKLLYMAASNGCYNLLPISLCIEGNVGAITV 60
           R LK V+Q ILL+SE EK +SM LL   A      LLP +L +E NV  IT+
Sbjct: 169 RALKSVLQGILLSSEGEKLNSMNLLLYMAPIAVVFLLPATLIMEKNVVGITI 220

[Close]

BLAST of CmoCh14G010230 vs. TAIR 10
Match: AT5G05820.1 (Nucleotide-sugar transporter family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 8   RTLKCVVQKILLTSEAEKRHSMKLLYMAASNGCYNLLPISLCIEGNVGAITV 60
           R LK V+Q ILL+SE EK +SM LL   A      LLP +L +E NV  IT+
Sbjct: 169 RALKSVLQGILLSSEGEKLNSMNLLLYMAPIAVVLLLPATLIMEKNVVGITI 220

The following BLAST results are available for this feature:

BLAST of CmoCh14G010230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH3	1.9e-07	57.89	Probable sugar phosphate/phosphate translocator At1g12500 OS=Arabidopsis thalian...	[more]

BLAST of CmoCh14G010230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L284	4.1e-08	65.52	probable sugar phosphate/phosphate translocator At1g12500 OS=Cucurbita maxima OX...	[more]
A0A5D3D7A0	4.1e-08	65.52	Putative sugar phosphate/phosphate translocator OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1DFQ0	4.1e-08	65.52	probable sugar phosphate/phosphate translocator At1g12500 OS=Momordica charantia...	[more]
A0A6J1GDD9	4.1e-08	65.52	probable sugar phosphate/phosphate translocator At1g12500 OS=Cucurbita moschata ...	[more]
A0A1S3BLI7	4.1e-08	65.52	probable sugar phosphate/phosphate translocator At1g12500 OS=Cucumis melo OX=365...	[more]

BLAST of CmoCh14G010230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12500.1	1.4e-08	57.89	Nucleotide-sugar transporter family protein	[more]
AT3G11320.1	1.6e-04	50.00	Nucleotide-sugar transporter family protein	[more]
AT5G05820.1	1.6e-04	50.00	Nucleotide-sugar transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11132:SF347	SUGAR PHOSPHATE TRANSPORTER DOMAIN-CONTAINING PROTEIN-RELATED	coord: 7..64
None	No IPR available	PANTHER	PTHR11132	SOLUTE CARRIER FAMILY 35	coord: 7..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G010230.1	CmoCh14G010230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016020	membrane
molecular_function	GO:0015297	antiporter activity