CmoCh14G006890 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G006890
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	Cmo_Chr14: 3547531 .. 3552292 (+)
RNA-Seq Expression	CmoCh14G006890
Synteny	CmoCh14G006890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTCTGGAGGTTGTGGCCAATTGCGAATTCTAGGGTTTAAGGGCGCCATTTTTCCGAACTCGGCGGTGCGAACCAACATCAGCAACGCATGTTCTCTAGGGCTTAGCCAATTCCCTCGTTCCCTTGTCTTTACCCTCTCTCTTCTTGTTCCTCTGCTCCGTTAATGTCGGAAAACTCCATGGATTCCAAGGGGAATGATGCTGCCACTAATGGCGAACATGAGGACGCCAAGCCCTTGAACCACAAAGACGATGGGAGTAGACATGATCCTCCCTCTCATGGCGACGGAGCGAGTGCGGGGTAAGTTTTCTTGCTCTGTAATACTCCAAGCGAATCTCTGGGTACTCGGTCGATATTTTCTTGTGTGGGCATGGTATTTTGTGGTCATGATGTGTTGGACGATTTTGTTTTGTTTTATGCTTCTTGATCCGTTTATATGGTCGTTTGGGTGCTGTTGTAGGAAAATCTTCGTTGGAGGTTTACCGCGGGAAACGACTTCTGGTTAGTTTTTTACACTTCGTCTTGTGTGGTGTCAGGCTTCTTGCTACGCAATCTCTGTGTTGTTGTTGTTGATTTCAATTGATTATATGCAGCACAATTTGTTAAACATTTTGGTGATTATGGAGAAATTACGGACTCTGTTATAATGAAGGACCGGAAGACTGGACATCCCCGCGGATTCGGGTTTGTGACTTATGCTGATCCCTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAATGGGAAACAAGTAGGCCTATGTTTAGTGTTGAATTTGAGTTAGACATTAGGTTTCAATGATTTTATGCTCAAACTTTGACTTAATTTTTAGGTGGAAATCAAGCGAACAATACCCAAAGGATCTTCCAGCTCTCGTGATTTCAAGACCAAGAAGATTTTTGTGGGTGGAATTCCTACGTCTGTAGACGAAGGTAGCTTATTGATTACACCATTGCTTTGTTTAGATGGTACTATGAGGTATTGAGTACTCACTTTTAAGTTTCAAGCAGATGAGTTCAGGGACTTTTTTATGCAATATGGTGAGGTTAAGGAACACCAGATTATGCGGGACCACTCCACTAGTCGGTCTCGTGGGTTTGGTTTTATTACATTTGAGACAGAGCAAGCAGTTGATGATCTCTTGGCAAATGGAAACAGACTTGAGTTGGCAGGCAGTCAGGTCAGCAAAGTTCTATCCTGGCTGCGATGGTCTAACATTTCCTCTCTCTATCTTTCGTAGATTTTGATGTATCAACACAAAATCTTCTTTCTGTTAACCAATTCGCTAGGTCCCTATTGTGGGTTTTTTTTATCATTTGTTTCAATTCTCTTTGAGAAATAGATGGAACTTCTTCCTCCTCATGTGGTTGCACAACTTTAGTATTTCTCGGATTTTGCACCATGAACCTTTGTTAGCAACACAACCTTTGTAGCACTACGAACATTTGTTGCACAACTTCTTCCTCCTCACTACGAACCTTTGTTATGCCGTACCAACATCTCCATTGCCACTATATCCTGAATTATTTTTGTTGTTACCAAGGCACAAGCATCTTCAATTGAGAAGTCTATACAGAGTAAGGATGGGGCCTGTAGGCTCCATCTTTTAACTTATTTGCGTCCATGGGTTCATTTGTTGTTCAGGGATGATCTGGATTGAAGTTGAAAAGTTCTAAATCTGTAAATCTATTTTGCAAAATGTTTTTGGAGAAGTAAATTAGTGGTTATTGAAAATAATTTTTTTGTTTTTTTGGAAGCAATGCTTGATATTGTTTGATTATTTGTCCTGTTTATGAACTTAAATATTAAAACATAGAATAGAAAATGATTGGAATCAAATTTTGAACATTTTCAAAATTAAACCTCACCTAAACAACAGAAAGCCATCTTTTATTGCATGCTTATTCAAGTTCAGATAAATGTTGAAACCAAAATTCATAAAGTTAACTGCATTTAAGGCTTTTTATAGGTCCTACTATGATTTTTTTATTGTATCAGTCACATGTACAACATAAGAATGGAGATTATTTACTCAACATATTCATCTATTGAAGTCATTTTAACAATTTGAGGTTTGTGTGTCTTTGTTCTAAAGGTGGAGATCAAGAAGGCAGAGCCAAAAAAGGCTAATCCACCTCCACCCCCTTCTAAAAGATACCATGATTCAAGGCCAAGTTACAGTGGTACCTATGGGGATGCATATGGGGAGTTTGGAGGTGGTGGGTATGGTGGTGGTTTTAGGGCTGGTGGACCGTATGGTGCTCGAGGTGGTGGATATGGTGGATATGGTGGAAATGATTTTAGTGGTTATGGAATGTATGGTACTGGTGGCATTGGAGCTTACAGAGAAGACCCCTCTATGGGGTACTCTGCTCGTTATGGAGCAGGCTTCAGTAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCTGACGAGAGTTATGGTGCATATAACAGCAGTGCTGCTCCTAATACTGGTGGGTATGCAGGTAGCTATGATATGGGCATTGGCACTGGATACCCTTCCGGTGGTAGAGGCTCCTTTTATGGAAGTAGAGGAGGAGGCGGAGGAGGTGGTGGTGGTGGTGGTGGAGGAGGAGGATATGATGGTGCAGGGAGTGCTCCAAGTGGTCGATATCATCCGTACGGACGGTAGTAACTAGTGGTGGGGAACCTTTGTTAATTGATGTGCTACCAGGACGGCAATGCTGATAAGTTCCCGGTCCTCAAAATTATGATAAATATGTGTGCCTCTTACCGTCACAAGATTCCTGCCATGTTCATCATGATCACAATTTTCAGAGATTTAGAATTTGACTGTACAATTGATTGTGACTAACTTGCTGGAGATTGTGCTAAGATTATGTATCACCCATATATGCCATTAATTTCTCCATTTTGCTATCAACATTTACGTTGTTTTATTGACATGGTTATTTTGAAGAATGTTTAATGAATTGGAATTTTTCGGTTTCCTTCTATTGCATGGTTGTTCTGAAAATTCTTTTTGACACCACCAATGGCATAAAAAAGGGTAAATCATGATACTACGAAATAGCGATAAAGGTCTCAACAGTGAGCTCCAGGAGGTTATGGAACTCAGAAGTTGCCAGTTGTGTTATGTTTGCACTCGCAACTCCTAGTAGAAGATGGTATGATAAATGCAATCCCTCTCTAAAGACGTTACCGTCATTCTGCTGTCGAAAAACTTCAATTGCTCGTCAATGTTTCCCTGTAAGTCTCTCTTCTTGTCCACTAAATTTTTTACTCATTGATTGCCACTCCTTTCTACACTAGAATGATTGTGAAAATTATTGCCTTTTTGTTTGATTTAATTGCTGTAAATTGGCTCAAGGAGCATCAAGAATGTGGGTTAGTAACTGAAATGCTATCTCTTGATTGAATTGTGAGTTTTAGGAATCTTGTTTGATGTGATGTCTCCACAGTTTGGGCCTTGGGGTGGGTGCAGACCTTTTTGTTGAAAAATGTATCTTAGTTACTTTTTTAAGGATGTGTTGAATGGGTGACCCGATGTATAGGATAATTTGCCTATGTAAAAAAGTAAGGACCCAGTGTAGGCAAGTATTCACCATCTTAAACCTGAGTTTAATGGAGGATTCAGGAAGCTTATTAAGAAAATTATGTCGGGAGCTTGAGTAGTGGATTACTTGTTCAAGTTATGGGTTTGAGAAGCCAAATAATGTGGTGAGGCAAACCCCTCCCTCGAACGTGATCTAGGCTTAGAAAGTCGAGCCCGCCCTAGTGTAACCCATGTTCCAAATATCGCCCCAGATGTGACTGGATATTCTTTACTAATATGAGCATAGTTGGGGAAGTTGGGTTCTAACAAATTCTTTGACCTTTAGAACCAAGTTATATGGTCATAATTGATAGGTATTATTCTAAGGTTTTATGAACTTCGACATCTTCCTCATGAAAGTTGCACAACTTTAAAGTATTATAACACAGCTAATGCTTCAATGAGTATGGTTATTGTGCTTAACTTTGTTTCATTGAGTTGTTATTGAACTACAGTGGCTGTCCTCTCAGTTTTTAGTGAGTGTTTTTTATATAGCCACGAATTAAAGTTGAGGGATGCTTTATAAGACATGCATCATAATGATCATGGGTGAATGGAGATCAACCAGAACGTTACAACCTCCAATAATTTCTTGTTCGGTGGTTCGACTTTTTCAATGATAACAAAGTAATGCTGAAGGATGATGAAATTGTAGGCCGTGTAATTGTTCGAGCTGTCTTATCCACTTTCAGGTTGTGAACATGGAGTTCGGACATTGCATTTTCAATTCTAAAAAGTAATGAATAGTCAAAAGAAAAGCTAGCTTGATAATCTCTACTTGGATTTAGATTTCAATGATTGAAATCTACTTTTTCAGATGTCTGTTGATTTGAGAGGTCAATTTCAGGTATAGTGCACACATGATCCTGATATCCTTGGAAGTATGAGTGCTTGTGGCAATACCCCCTCCTCAAATTCCTTGAACCAAGACCATACCATACCATATTATGAGCTCATGGCTTATTTCATCATATTTTTTGCCATATTTTTTGTTTCTTATACTATCACTGTGGAAGATGTATGTATGGTATTATGGCTTGTTGCTGACTTTGTGATTTCTTCTTGACATATAATAATGTAGTTTTGTTGCGTTGGCTCTTCCCTGTTCTTGATGTCTCTCTCAATTTTTGTTTGTGTTTATTTGTTGTTGTTTGTGCAGAATCCACCACCTGTAA

mRNA sequence

AGGTCTGGAGGTTGTGGCCAATTGCGAATTCTAGGGTTTAAGGGCGCCATTTTTCCGAACTCGGCGGTGCGAACCAACATCAGCAACGCATGTTCTCTAGGGCTTAGCCAATTCCCTCGTTCCCTTGTCTTTACCCTCTCTCTTCTTGTTCCTCTGCTCCGTTAATGTCGGAAAACTCCATGGATTCCAAGGGGAATGATGCTGCCACTAATGGCGAACATGAGGACGCCAAGCCCTTGAACCACAAAGACGATGGGAGTAGACATGATCCTCCCTCTCATGGCGACGGAGCGAGTGCGGGGAAAATCTTCGTTGGAGGTTTACCGCGGGAAACGACTTCTGCACAATTTGTTAAACATTTTGGTGATTATGGAGAAATTACGGACTCTGTTATAATGAAGGACCGGAAGACTGGACATCCCCGCGGATTCGGGTTTGTGACTTATGCTGATCCCTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAATGGGAAACAAGTGGAAATCAAGCGAACAATACCCAAAGGATCTTCCAGCTCTCGTGATTTCAAGACCAAGAAGATTTTTGTGGGTGGAATTCCTACGTCTGTAGACGAAGGTAGCTTATTGATTACACCATTGCTTTGTTTAGATGGTACTATGAGGGACTTTTTTATGCAATATGGTGAGGTTAAGGAACACCAGATTATGCGGGACCACTCCACTAGTCGGTCTCGTGGGTTTGGTTTTATTACATTTGAGACAGAGCAAGCAGTTGATGATCTCTTGGCAAATGGAAACAGACTTGAGTTGGCAGGCAGTCAGGTGGAGATCAAGAAGGCAGAGCCAAAAAAGGCTAATCCACCTCCACCCCCTTCTAAAAGATACCATGATTCAAGGCCAAGTTACAGTGGTACCTATGGGGATGCATATGGGGAGTTTGGAGGTGGTGGGTATGGTGGTGGTTTTAGGGCTGGTGGACCGTATGGTGCTCGAGGTGGTGGATATGGTGGATATGGTGGAAATGATTTTAGTGGTTATGGAATGTATGGTACTGGTGGCATTGGAGCTTACAGAGAAGACCCCTCTATGGGGTACTCTGCTCGTTATGGAGCAGGCTTCAGTAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCTGACGAGAGTTATGGTGCATATAACAGCAGTGCTGCTCCTAATACTGGTGGGTATGCAGGTAGCTATGATATGGGCATTGGCACTGGATACCCTTCCGGTGGTAGAGGCTCCTTTTATGGAAGTAGAGGAGGAGGCGGAGGAGGTGGTGGTGGTGGTGGTGGAGGAGGAGGATATGATGGTGCAGGGAGTGCTCCAAGTGGTCGATATCATCCGTACGGACGAATCCACCACCTGTAA

Coding sequence (CDS)

ATGTCGGAAAACTCCATGGATTCCAAGGGGAATGATGCTGCCACTAATGGCGAACATGAGGACGCCAAGCCCTTGAACCACAAAGACGATGGGAGTAGACATGATCCTCCCTCTCATGGCGACGGAGCGAGTGCGGGGAAAATCTTCGTTGGAGGTTTACCGCGGGAAACGACTTCTGCACAATTTGTTAAACATTTTGGTGATTATGGAGAAATTACGGACTCTGTTATAATGAAGGACCGGAAGACTGGACATCCCCGCGGATTCGGGTTTGTGACTTATGCTGATCCCTCTGTGGTAGATAAAGTCATTGAGGACACACATATTATTAATGGGAAACAAGTGGAAATCAAGCGAACAATACCCAAAGGATCTTCCAGCTCTCGTGATTTCAAGACCAAGAAGATTTTTGTGGGTGGAATTCCTACGTCTGTAGACGAAGGTAGCTTATTGATTACACCATTGCTTTGTTTAGATGGTACTATGAGGGACTTTTTTATGCAATATGGTGAGGTTAAGGAACACCAGATTATGCGGGACCACTCCACTAGTCGGTCTCGTGGGTTTGGTTTTATTACATTTGAGACAGAGCAAGCAGTTGATGATCTCTTGGCAAATGGAAACAGACTTGAGTTGGCAGGCAGTCAGGTGGAGATCAAGAAGGCAGAGCCAAAAAAGGCTAATCCACCTCCACCCCCTTCTAAAAGATACCATGATTCAAGGCCAAGTTACAGTGGTACCTATGGGGATGCATATGGGGAGTTTGGAGGTGGTGGGTATGGTGGTGGTTTTAGGGCTGGTGGACCGTATGGTGCTCGAGGTGGTGGATATGGTGGATATGGTGGAAATGATTTTAGTGGTTATGGAATGTATGGTACTGGTGGCATTGGAGCTTACAGAGAAGACCCCTCTATGGGGTACTCTGCTCGTTATGGAGCAGGCTTCAGTAGAGGTTATGATTTTAGAGGTGGTTATGGTGGACCTGACGAGAGTTATGGTGCATATAACAGCAGTGCTGCTCCTAATACTGGTGGGTATGCAGGTAGCTATGATATGGGCATTGGCACTGGATACCCTTCCGGTGGTAGAGGCTCCTTTTATGGAAGTAGAGGAGGAGGCGGAGGAGGTGGTGGTGGTGGTGGTGGAGGAGGAGGATATGATGGTGCAGGGAGTGCTCCAAGTGGTCGATATCATCCGTACGGACGAATCCACCACCTGTAA

Protein sequence

MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSSSSRDFKTKKIFVGGIPTSVDEGSLLITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSRGGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGRIHHL

Homology

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BLAST of CmoCh14G006890 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-33
Identity = 144/395 (36.46%), Postives = 200/395 (50.63%), Query Frame = 0


Query: 46  GKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIE 105
           GK+FVGG+  ET   +  +HF +YGE++ +++M+D+ TG PRGFGFV ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 106 DTHIINGKQVEIKRTIPK--------------GSSSSRDF--KTKKIFVGGIPTSVDEGS 165
           + H I+ ++V++KR + +                SS  D   KTKKIFVGG+P ++    
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTL---- 125

Query: 166 LLITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNR 225
                    D   R +F  YG V +  IM D +T+R RGFGF++F++E AVD +L +   
Sbjct: 126 --------TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTF 185

Query: 226 LELAGSQVEIKKAEPKKANP----------PPPPSKRYHDSRPSYSG-----------TY 285
            +L+G QVE+K+A PK ANP               + Y  +  SY G           + 
Sbjct: 186 HDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSV 245

Query: 286 GDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYS 345
           G+    +G  GYG G+   G  GA  G YGGY G+   GYG   T G GA    P  GY 
Sbjct: 246 GNGLPSYGSSGYGAGY-GNGSNGAGYGAYGGYTGS-AGGYGAGATAGYGA-TNIPGAGYG 305

Query: 346 ARYGAGFSRGYD--FRGGYGGPDESYGAYNS-----SAAPNTGGYAGSYDMGIGTGYPSG 391
           +  G      +D     GYG P    GA +S      AAP T   +G  + G G G  SG
Sbjct: 306 SSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYGGYSG 365

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BLAST of CmoCh14G006890 vs. ExPASy Swiss-Prot
Match: P51968 (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis OX=8355 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.0e-27
Identity = 138/385 (35.84%), Postives = 185/385 (48.05%), Query Frame = 0


Query: 30  DGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGF 89
           D   HDP    +     K+F+GGL  ETT     +HF  +G++TD V+M+D +T   RGF
Sbjct: 14  DDQGHDPK---EPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGF 73

Query: 90  GFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIPKGSSS--SRDFKTKKIFVGGIPTSVD 149
           GFVTY+    VD  +    H ++G+ VE KR + +  S+        KKIFVGGI    +
Sbjct: 74  GFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTE 133

Query: 150 EGSLLITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLAN 209
           E  L            RD+   YG+++  ++M D  + + RGF F+TF+    VD ++  
Sbjct: 134 EYHL------------RDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 193

Query: 210 GNRLELAGSQVEIKKAEPKKANPPPPPSK-------RYHDSRPSYSGTYGDAYGEFGGGG 269
                + G   E+KKA  K+        +        +     +Y G  G  +G  GGGG
Sbjct: 194 KYH-TINGHNCEVKKALSKQEMQTASAQRGRGGGGSNFMGRGGNYGGGDGGNFGRGGGGG 253

Query: 270 YG--GGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSR 329
           +G  GG+  GG  G  GGGYGG GG+ ++G+G    G  G Y   P  GY  R G G S 
Sbjct: 254 FGNRGGYGGGG--GRGGGGYGG-GGDGYNGFG----GDGGNYGGGP--GYGGR-GYGGSP 313

Query: 330 GYDFR-GGYGGPDESYGAYNSSA------APNTGGYAGSYDMGIG-------TGYPSGGR 389
           GY  + GGYGG    Y  YN S         + G Y G      G       +G  SGG 
Sbjct: 314 GYGNQGGGYGGGGGGYDGYNESGNFGGGNYNDFGNYGGQQQSNYGPMKGGSFSGRSSGGS 370

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BLAST of CmoCh14G006890 vs. ExPASy Swiss-Prot
Match: P21522 (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana OX=7009 GN=HNRNP PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.5e-26
Identity = 132/374 (35.29%), Postives = 173/374 (46.26%), Query Frame = 0


Query: 39  HGDGASAGKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPS 98
           HG+     K+F+GGL   TT     +HF  +GEI D V+MKD KT   RGFGF+TY+   
Sbjct: 10  HGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAH 69

Query: 99  VVDKVIE-DTHIINGKQVEIKRTIPKGSSSSRD--FKTKKIFVGGIPTSVDEGSLLITPL 158
           +VD       H ++G+ VE KR +P+      +     KK+FVGGI   ++E  L     
Sbjct: 70  MVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDL----- 129

Query: 159 LCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGS 218
                  RD+F QYG V    I+ D  T + RGF F+ F+    VD +  + N  ++ G 
Sbjct: 130 -------RDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNH-QIRGK 189

Query: 219 QVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGGGGYGG-GFRAGGPYG--- 278
            +++KKA PK                       GDA G  GGGG GG G  AGG +G   
Sbjct: 190 HIDVKKALPK-----------------------GDAPGGRGGGGRGGVGGGAGGGWGGGR 249

Query: 279 ------ARGGGYGGYGGND------FSGYGMYGTGGIGAYREDPSMGYSARYGAGFSR-G 338
                 A GGG GG+GG D        G   +G GG G       MG   R+G G    G
Sbjct: 250 GDWGGSAGGGGGGGWGGADPWENGRGGGGDRWGGGGGG-------MGGGDRWGGGGGMGG 309

Query: 339 YDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIG-------TGYPSGGRGSFYGSRG 386
            D  GG GG    +     ++ P + G+ G Y    G       +GY  G R + Y  RG
Sbjct: 310 GDRYGGGGGRSGGWSNDGYNSGPQSDGFGGGYKQSYGGGAVRGSSGY-GGSRSAPYSDRG 339

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BLAST of CmoCh14G006890 vs. ExPASy Swiss-Prot
Match: Q8BG05 (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.5e-26
Identity = 134/382 (35.08%), Postives = 174/382 (45.55%), Query Frame = 0


Query: 34  HDPPSHGDGASAGKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVT 93
           HDP    +     K+F+GGL  ETT     +HF  +G +TD V+M+D +T   RGFGFVT
Sbjct: 26  HDPK---EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 85

Query: 94  YADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSS--SSRDFKTKKIFVGGIPTSVDEGSL 153
           Y+    VD  +    H ++G+ VE KR + +  S         KKIFVGGI    +E +L
Sbjct: 86  YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 145

Query: 154 LITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRL 213
                       RD+F +YG+++  ++M D  + + RGF F+TF+    VD ++      
Sbjct: 146 ------------RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH- 205

Query: 214 ELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGGGGYGGGFRAGGPY 273
            + G   E+KKA  K+       S      R   SG +    G FGGG  GG F  GG +
Sbjct: 206 TINGHNCEVKKALSKQ----EMQSAGSQRGRGGGSGNFMGRGGNFGGG--GGNFGRGGNF 265

Query: 274 GARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDE 333
           G R GGYGG GG     YG    GG G Y  +   G    YG G   GY  RGGYGG   
Sbjct: 266 GGR-GGYGGGGGGSRGSYG----GGDGGY--NGFGGDGGNYGGG--PGYSSRGGYGGGGP 325

Query: 334 SYGAYNSSAAPNTGGYAGSYDMGI--GTGYPSGG-------------------RGSFYGS 392
            YG          GGY G  + G   G  Y  GG                   +G  +G 
Sbjct: 326 GYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG 376

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BLAST of CmoCh14G006890 vs. ExPASy Swiss-Prot
Match: Q6URK4 (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.5e-26
Identity = 134/382 (35.08%), Postives = 174/382 (45.55%), Query Frame = 0


Query: 34  HDPPSHGDGASAGKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVT 93
           HDP    +     K+F+GGL  ETT     +HF  +G +TD V+M+D +T   RGFGFVT
Sbjct: 26  HDPK---EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 85

Query: 94  YADPSVVDKVI-EDTHIINGKQVEIKRTIPKGSS--SSRDFKTKKIFVGGIPTSVDEGSL 153
           Y+    VD  +    H ++G+ VE KR + +  S         KKIFVGGI    +E +L
Sbjct: 86  YSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNL 145

Query: 154 LITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRL 213
                       RD+F +YG+++  ++M D  + + RGF F+TF+    VD ++      
Sbjct: 146 ------------RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYH- 205

Query: 214 ELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGGGGYGGGFRAGGPY 273
            + G   E+KKA  K+       S      R   SG +    G FGGG  GG F  GG +
Sbjct: 206 TINGHNCEVKKALSKQ----EMQSAGSQRGRGGGSGNFMGRGGNFGGG--GGNFGRGGNF 265

Query: 274 GARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDE 333
           G R GGYGG GG     YG    GG G Y  +   G    YG G   GY  RGGYGG   
Sbjct: 266 GGR-GGYGGGGGGSRGSYG----GGDGGY--NGFGGDGGNYGGG--PGYSSRGGYGGGGP 325

Query: 334 SYGAYNSSAAPNTGGYAGSYDMGI--GTGYPSGG-------------------RGSFYGS 392
            YG          GGY G  + G   G  Y  GG                   +G  +G 
Sbjct: 326 GYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG 376

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BLAST of CmoCh14G006890 vs. ExPASy TrEMBL
Match: A0A6J1F7E2 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita moschata OX=3662 GN=LOC111441536 PE=4 SV=1)

HSP 1 Score: 732.3 bits (1889), Expect = 1.1e-207
Identity = 387/402 (96.27%), Postives = 387/402 (96.27%), Query Frame = 0


Query: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60
           MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA
Sbjct: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120
           QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT
Sbjct: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120

Query: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEGSLLITPLLCLDGTMRDFFMQYGEVKEHQIMRD 180
           IPKGSSSSRDFKTKKIFVGGIPTSVDE               RDFFMQYGEVKEHQIMRD
Sbjct: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEDE------------FRDFFMQYGEVKEHQIMRD 180

Query: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDS 240
           HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDS
Sbjct: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDS 240

Query: 241 RPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYR 300
           RPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYR
Sbjct: 241 RPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYR 300

Query: 301 EDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPS 360
           EDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPS
Sbjct: 301 EDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPS 360

Query: 361 GGRGSFYGSRGGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 403
           GGRGSFYGSRGGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGRGSFYGSRGGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 390

[Close]

BLAST of CmoCh14G006890 vs. ExPASy TrEMBL
Match: A0A6J1J2Y6 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita maxima OX=3661 GN=LOC111481383 PE=4 SV=1)

HSP 1 Score: 724.9 bits (1870), Expect = 1.8e-205
Identity = 384/402 (95.52%), Postives = 385/402 (95.77%), Query Frame = 0


Query: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60
           MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA
Sbjct: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120
           QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT
Sbjct: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120

Query: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEGSLLITPLLCLDGTMRDFFMQYGEVKEHQIMRD 180
           IPKGSSSSRDFKTKKIFVGGIPTSVDE               RDFFMQYGEVKEHQIMRD
Sbjct: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEDE------------FRDFFMQYGEVKEHQIMRD 180

Query: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDS 240
           HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKK+NPPPPPSKRYHDS
Sbjct: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKSNPPPPPSKRYHDS 240

Query: 241 RPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYR 300
           RPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYR
Sbjct: 241 RPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYR 300

Query: 301 EDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPS 360
           EDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPS
Sbjct: 301 EDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPS 360

Query: 361 GGRGSFYGSRGGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 403
           GGRGSFYGSR  GGGGGGGGGGGGGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGRGSFYGSR--GGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 388

[Close]

BLAST of CmoCh14G006890 vs. ExPASy TrEMBL
Match: A0A0A0LG75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G839850 PE=4 SV=1)

HSP 1 Score: 689.9 bits (1779), Expect = 6.5e-195
Identity = 364/402 (90.55%), Postives = 370/402 (92.04%), Query Frame = 0


Query: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60
           MSENSMDSK ND ATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA
Sbjct: 1   MSENSMDSKPNDVATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60

Query: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120
           QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT
Sbjct: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120

Query: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEGSLLITPLLCLDGTMRDFFMQYGEVKEHQIMRD 180
           IPKGSSSSRDFKTKKIFVGGIPTSVDE               RDFFMQYG VKEHQIMRD
Sbjct: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEDE------------FRDFFMQYGVVKEHQIMRD 180

Query: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDS 240
           HSTSRSRGFGFITFETEQAVDDLLANGNRLE+AGSQVEIKKAEPKKANPPP PSKR+HDS
Sbjct: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRFHDS 240

Query: 241 RPSYSGTYGDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYR 300
           RPSYSG YGDAYGEFGGGGYGG FRAGGPYGARGGGYGGYGGNDFSGYGMYGTGG+GAYR
Sbjct: 241 RPSYSGAYGDAYGEFGGGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAYR 300

Query: 301 EDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPS 360
           EDPSMGYSARYGA FSRGYDFRGGYGGPDESYGAYNS  AP+TGGYAGSYDMG+GTGY +
Sbjct: 301 EDPSMGYSARYGASFSRGYDFRGGYGGPDESYGAYNSGGAPSTGGYAGSYDMGMGTGYAA 360

Query: 361 GGRGSFYGSRGGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 403
           GGRGSFYGSR       GGGGGGGGYDGAGSAPSGRYHPYGR
Sbjct: 361 GGRGSFYGSR-------GGGGGGGGYDGAGSAPSGRYHPYGR 383

[Close]

BLAST of CmoCh14G006890 vs. ExPASy TrEMBL
Match: A0A5A7UQ58 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00830 PE=4 SV=1)

HSP 1 Score: 674.9 bits (1740), Expect = 2.2e-190
Identity = 359/403 (89.08%), Postives = 365/403 (90.57%), Query Frame = 0


Query: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60
           MSENSMDSK ND ATNGEH+DAKPLNHKDDGSRHDPP HGDGASAGKIFVGGLPRETTSA
Sbjct: 1   MSENSMDSKPNDVATNGEHDDAKPLNHKDDGSRHDPPPHGDGASAGKIFVGGLPRETTSA 60

Query: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120
           QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT
Sbjct: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120

Query: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEGSLLITPLLCLDGTMRDFFMQYGEVKEHQIMRD 180
           IPKGSSSSRDFKTKKIFVGGIPTSVDE               RDFFMQYG VKEHQIMRD
Sbjct: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEAD-----------EFRDFFMQYGVVKEHQIMRD 180

Query: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDS 240
           HSTSRSRGFGFITFETEQAVDDLLANGNRLE+AGSQVEIKKAEPKKANPPP PSKRYH+S
Sbjct: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRYHES 240

Query: 241 RPSYSGTY-GDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAY 300
           RPSYSG Y GDAYGEFGGGGYGG FRAGGPYGARGGGYGGYGGNDFSGYGMYGTGG+GAY
Sbjct: 241 RPSYSGAYGGDAYGEFGGGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAY 300

Query: 301 REDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYP 360
           REDPSMGYSARYGA FSRGYDFRGGYGGPDESYGAYNS  APNTGGYA SYDMG+GTGY 
Sbjct: 301 REDPSMGYSARYGASFSRGYDFRGGYGGPDESYGAYNSGGAPNTGGYA-SYDMGMGTGYA 360

Query: 361 SGGRGSFYGSRGGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 403
           +GGRGSFYGSR          GGGGGYDGAGSAPSGRYHPYGR
Sbjct: 361 AGGRGSFYGSR----------GGGGGYDGAGSAPSGRYHPYGR 381

[Close]

BLAST of CmoCh14G006890 vs. ExPASy TrEMBL
Match: A0A5D3D587 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00140 PE=4 SV=1)

HSP 1 Score: 674.1 bits (1738), Expect = 3.7e-190
Identity = 359/403 (89.08%), Postives = 365/403 (90.57%), Query Frame = 0


Query: 1   MSENSMDSKGNDAATNGEHEDAKPLNHKDDGSRHDPPSHGDGASAGKIFVGGLPRETTSA 60
           MSENSMDSK ND ATNGEH+DAKPLNHKDDGSRHDPP HGDGASAGKIFVGGLPRETTSA
Sbjct: 1   MSENSMDSKPNDVATNGEHDDAKPLNHKDDGSRHDPPPHGDGASAGKIFVGGLPRETTSA 60

Query: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120
           QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT
Sbjct: 61  QFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT 120

Query: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEGSLLITPLLCLDGTMRDFFMQYGEVKEHQIMRD 180
           IPKGSSSSRDFKTKKIFVGGIPTSVDE               RDFFMQYG VKEHQIMRD
Sbjct: 121 IPKGSSSSRDFKTKKIFVGGIPTSVDEDE------------FRDFFMQYGVVKEHQIMRD 180

Query: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDS 240
           HSTSRSRGFGFITFETEQAVDDLLANGNRLE+AGSQVEIKKAEPKKANPPP PSKRYH+S
Sbjct: 181 HSTSRSRGFGFITFETEQAVDDLLANGNRLEMAGSQVEIKKAEPKKANPPPAPSKRYHES 240

Query: 241 RPSYSGTY-GDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAY 300
           RPSYSG Y GDAYGEFGGGGYGG FRAGGPYGARGGGYGGYGGNDFSGYGMYGTGG+GAY
Sbjct: 241 RPSYSGAYGGDAYGEFGGGGYGGSFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGMGAY 300

Query: 301 REDPSMGYSARYGAGFSRGYDFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYP 360
           REDPSMGYSARYGA FSRGYDFRGGYGGPDESYGAYNS  APNTGGYA SYDMG+GTGY 
Sbjct: 301 REDPSMGYSARYGASFSRGYDFRGGYGGPDESYGAYNSGGAPNTGGYA-SYDMGMGTGYA 360

Query: 361 SGGRGSFYGSRGGGGGGGGGGGGGGGYDGAGSAPSGRYHPYGR 403
           +GGRGSFYGSR          GGGGGYDGAGSAPSGRYHPYGR
Sbjct: 361 AGGRGSFYGSR----------GGGGGYDGAGSAPSGRYHPYGR 380

[Close]

BLAST of CmoCh14G006890 vs. TAIR 10
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 372.9 bits (956), Expect = 3.4e-103
Identity = 253/441 (57.37%), Postives = 287/441 (65.08%), Query Frame = 0


Query: 6   MDSKGNDAATNGEHEDAKPLNH-KDDGSRHDPPSHGDGASAGKIFVGGLPRETTSAQFVK 65
           MD  G +     E  D KP    +DD  +  P S G   SAGKIFVGGL RETTSA+F+K
Sbjct: 1   MDPYGTETVIEDEIHDPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLK 60

Query: 66  HFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKG 125
           HFG YGEITDSVIMKDRKTG PRGFGFVTYAD SVVDKVI+D HII GKQVEIKRTIP+G
Sbjct: 61  HFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRG 120

Query: 126 SSSSRDFKTKKIFVGGIPTSVDEGSLLITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTS 185
           S SS DFKTKKIFVGGIP+SVD            D   ++FFMQ+GE+KEHQIMRDHST 
Sbjct: 121 SMSSNDFKTKKIFVGGIPSSVD------------DDEFKEFFMQFGELKEHQIMRDHSTG 180

Query: 186 RSRGFGFITFETEQAVDDLLANGNRLELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSY 245
           RSRGFGF+T+E+E  VD LLA GNR+EL+G+QVEIKKAEPKK N    PSKR+ DSR ++
Sbjct: 181 RSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNF 240

Query: 246 SGTYGDAYGEFGGGGY---GGGFRAGGPY-GARGGGYGGYGGNDFSGYGMYG-TGGIGAY 305
            G YGD YG   GGGY   GG +++GG Y G R GGYGGYGG +F GYG  G  GG+G Y
Sbjct: 241 GGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYGGYGG-EFGGYGGGGYGGGVGPY 300

Query: 306 REDPSMGYSARYGAGFSRGYDFRGGY---------GGPDESYGAYNSSAAPNTGGYAGSY 365
           R +P++GYS RYG G   GY+ RGGY         GGP + YG          GG +GSY
Sbjct: 301 RGEPALGYSGRYGGG-GGGYN-RGGYSMGGGGGYGGGPGDMYGGSYGEPGGGYGGPSGSY 360

Query: 366 DMGIGT----------------------GYPSGGRG----SFYGSRGGGGGGG---GGGG 403
             G G+                      GY  GG G      YG+ GGG GGG   GGGG
Sbjct: 361 GGGYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYGGGG 420

[Close]

BLAST of CmoCh14G006890 vs. TAIR 10
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 287.7 bits (735), Expect = 1.4e-77
Identity = 204/391 (52.17%), Postives = 249/391 (63.68%), Query Frame = 0


Query: 32  SRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGF 91
           SR+D    GDGAS GKIF+GGL ++TT+  F KHFG YGEITDSVIM+DR TG PRGFGF
Sbjct: 5   SRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGF 64

Query: 92  VTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS--SSSRDFKTKKIFVGGIPTSVDEGS 151
           +T+ADPSVVDKVIEDTH+INGKQVEIKRTIPKG+  + S+D KTKKIFVGGIP++V E  
Sbjct: 65  ITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDE 124

Query: 152 LLITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNR 211
           L            +DFF +YG V EHQ++RDH T+RSRGFGF+ F++E+ VD+LL+ GN 
Sbjct: 125 L------------KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNM 184

Query: 212 LELAGSQVEIKKAEPKKANPPPPPSKRYHDSRPSYSGTYGDAYGEFGG--GGYG---GGF 271
           +++A +QVEIKKAEPKK+    PPS   H    S + +Y    G +GG  GGYG   G  
Sbjct: 185 IDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPI 244

Query: 272 RA-GGPYGARGGGYG---GYGGNDF-SGYGMYGTGGIGAYREDPSMGYSARYGAGFSRGY 331
           R+ GGP     GGYG   G  G +F  GY  YG G +G YR +P +GYS+R+G       
Sbjct: 245 RSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFG------- 304

Query: 332 DFRGGYGGPDESYGAYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSRGGGGGGGG- 391
            +  G+GG  E YG           G  G+Y      GYP GG G  YG  GG G GG  
Sbjct: 305 PYGSGFGG--EGYGR----------GGEGAY-----LGYPRGG-GEGYGGYGGPGYGGAY 358

Query: 392 -GGGGGGGYDGAGS------APSGRYHPYGR 403
             GG GG Y+GAG       + S RYHPY R
Sbjct: 365 ESGGPGGSYEGAGGPYGRGYSSSSRYHPYAR 358

[Close]

BLAST of CmoCh14G006890 vs. TAIR 10
Match: AT3G13224.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 247.7 bits (631), Expect = 1.6e-65
Identity = 120/192 (62.50%), Postives = 150/192 (78.12%), Query Frame = 0


Query: 32  SRHDPPSHGDGASAGKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGF 91
           SR+D    GDGAS GKIF+GGL ++TT+  F KHFG YGEITDSVIM+DR TG PRGFGF
Sbjct: 5   SRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGF 64

Query: 92  VTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGS--SSSRDFKTKKIFVGGIPTSVDEGS 151
           +T+ADPSVVDKVIEDTH+INGKQVEIKRTIPKG+  + S+D KTKKIFVGGIP++V E  
Sbjct: 65  ITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDE 124

Query: 152 LLITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNR 211
           L            +DFF +YG V EHQ++RDH T+RSRGFGF+ F++E+ VD+LL+ GN 
Sbjct: 125 L------------KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNM 184

Query: 212 LELAGSQVEIKK 222
           +++A +QV + K
Sbjct: 185 IDMADTQVSLYK 184

[Close]

BLAST of CmoCh14G006890 vs. TAIR 10
Match: AT1G17640.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 179.9 bits (455), Expect = 4.2e-45
Identity = 146/368 (39.67%), Postives = 197/368 (53.53%), Query Frame = 0


Query: 43  ASAGKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDK 102
           +S GK+FVGG+  ETT+  F  +FG +GE+ DSVIM DR TG+PRGFGFVT+AD +V +K
Sbjct: 63  SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122

Query: 103 VIEDTHIINGKQVEIKRTIPKGSSSS---RDFKTKKIFVGGIPTSVDEGSLLITPLLCLD 162
           V+E+ H+I+ ++V++KRT+P+G   +      KT+KIFVGG+P  ++E  L         
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDEL--------- 182

Query: 163 GTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNRLELAGSQVEI 222
              +++F  YG++ EHQIM DH T RSRGFGF+TF+TE +VD L ++G   EL   QVEI
Sbjct: 183 ---KNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEI 242

Query: 223 KKAEPKKANPPPP----PSKRYHDSRPSYSGTYGDAYGEFGG-GGYGGGFRAGGPYGARG 282
           K+AEPK+           +   +D   SYSG   + Y  + G GGY              
Sbjct: 243 KRAEPKRTGRDNSFRSYGASGKYDQEDSYSGKANEDYSMYSGYGGY-------------- 302

Query: 283 GGYGGYGGNDF-SGYGMYGTGGIGAYREDPSMGYSARYGAGFSRGYDFRGGYGGPDESYG 342
           GGYG Y GN   +  G YG GG          GY   YG G   G  F  GYG       
Sbjct: 303 GGYGAYAGNSMVNPAGFYGYGG----------GYGYGYGYG---GQMFNMGYG------- 362

Query: 343 AYNSSAAPNTGGYAGSYDMGIGTGYPSGGRGSFYGSRG-GGGGGGGGGGGGGGYDGAGSA 401
                     GGY+      +G+GY      ++ G +  G G  G   G G G +G+G  
Sbjct: 363 ---------AGGYS-----HMGSGYGVAAAAAYGGGKSHGNGNNGSSSGKGNGTNGSG-- 367

[Close]

BLAST of CmoCh14G006890 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.4 bits (363), Expect = 1.9e-34
Identity = 144/395 (36.46%), Postives = 200/395 (50.63%), Query Frame = 0


Query: 46  GKIFVGGLPRETTSAQFVKHFGDYGEITDSVIMKDRKTGHPRGFGFVTYADPSVVDKVIE 105
           GK+FVGG+  ET   +  +HF +YGE++ +++M+D+ TG PRGFGFV ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 106 DTHIINGKQVEIKRTIPK--------------GSSSSRDF--KTKKIFVGGIPTSVDEGS 165
           + H I+ ++V++KR + +                SS  D   KTKKIFVGG+P ++    
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTL---- 125

Query: 166 LLITPLLCLDGTMRDFFMQYGEVKEHQIMRDHSTSRSRGFGFITFETEQAVDDLLANGNR 225
                    D   R +F  YG V +  IM D +T+R RGFGF++F++E AVD +L +   
Sbjct: 126 --------TDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL-HKTF 185

Query: 226 LELAGSQVEIKKAEPKKANP----------PPPPSKRYHDSRPSYSG-----------TY 285
            +L+G QVE+K+A PK ANP               + Y  +  SY G           + 
Sbjct: 186 HDLSGKQVEVKRALPKDANPGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSV 245

Query: 286 GDAYGEFGGGGYGGGFRAGGPYGARGGGYGGYGGNDFSGYGMYGTGGIGAYREDPSMGYS 345
           G+    +G  GYG G+   G  GA  G YGGY G+   GYG   T G GA    P  GY 
Sbjct: 246 GNGLPSYGSSGYGAGY-GNGSNGAGYGAYGGYTGS-AGGYGAGATAGYGA-TNIPGAGYG 305

Query: 346 ARYGAGFSRGYD--FRGGYGGPDESYGAYNS-----SAAPNTGGYAGSYDMGIGTGYPSG 391
           +  G      +D     GYG P    GA +S      AAP T   +G  + G G G  SG
Sbjct: 306 SSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYGGYSG 365

The following BLAST results are available for this feature:

BLAST of CmoCh14G006890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	2.7e-33	36.46	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
P51968	5.0e-27	35.84	Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis OX=8355 P...	[more]
P21522	2.5e-26	35.29	Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americ...	[more]
Q8BG05	5.5e-26	35.08	Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus OX=10090 GN=Hnrnpa3 P...	[more]
Q6URK4	5.5e-26	35.08	Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus OX=10116 GN=Hnrn...	[more]

BLAST of CmoCh14G006890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7E2	1.1e-207	96.27	heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1J2Y6	1.8e-205	95.52	heterogeneous nuclear ribonucleoprotein 1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A0A0LG75	6.5e-195	90.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G839850 PE=4 SV=1	[more]
A0A5A7UQ58	2.2e-190	89.08	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3D587	3.7e-190	89.08	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of CmoCh14G006890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40490.1	3.4e-103	57.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.2	1.4e-77	52.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13224.1	1.6e-65	62.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17640.1	4.2e-45	39.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	1.9e-34	36.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 135..220 e-value: 2.1E-13 score: 60.5 coord: 47..118 e-value: 3.7E-21 score: 86.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 161..217 e-value: 3.2E-10 score: 39.7 coord: 48..115 e-value: 3.1E-15 score: 55.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 134..224 score: 16.107859
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 46..122 score: 16.039637
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..126 e-value: 2.0E-24 score: 88.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 127..293 e-value: 2.9E-21 score: 78.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 387..406
None	No IPR available	PANTHER	PTHR48033	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 6..402
None	No IPR available	PANTHER	PTHR48033:SF5	NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	coord: 6..402
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..150
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 122..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G006890.1	CmoCh14G006890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0048576	positive regulation of short-day photoperiodism, flowering
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0003730	mRNA 3'-UTR binding
molecular_function	GO:0097157	pre-mRNA intronic binding
molecular_function	GO:0003676	nucleic acid binding