CmoCh14G005660 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G005660
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	CRM domain-containing protein
Location	Cmo_Chr14: 2880620 .. 2884475 (-)
RNA-Seq Expression	CmoCh14G005660
Synteny	CmoCh14G005660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATAAACGTTAGCGCCACCTCGCCCTGCTCCATCTCTACCTAGAGTCGACTTGTTATCGGTTCGAGCCGACTCCTATTGGCTTGGGTTCAGCTCTCGCACCAATTCTCACCACCGTGGCTCACCATCGATCTCTCTCTCTCTCTCTCTCTGCGCAGGGTTTAGTCTCATTCACACTACCGTCGATTCTCTCTCCCAGCGTTGCCGTCGGTTGCTTTGACACGCGGCTGGTCTCTCGGATTCCCGCTTCCTCTAGGGACAGCACCGATATCCTCAGGTACAAGTTTTTCTGGGTTTTAAATTTCTTTTTAAGTTCGAGGAACTTGGAATTGTGATTTTCTTTGATTAGTGAGTGTGCAAACGGATGATTTGGATTTTTTGTGGTTTTTTCCCCTTAGATGTTAAGATAATGAGATGAAATTTCTGGTATTACCTTTTGTCTGAGCTTTCTATATCGTTTCATTGTTAAATATTGCAAGTGATTATTAAAACTGTGGGAACAAAACTTGATTAATCGTCTTCAAATTTATAGTGAGAAATGCCTAGGGGGATTTCTTTCTCATGTAATTTTCTTCTGTTCTAGTTAAAATGAAATAGGAGAAAGCAGAAATTTATCGAACCCAATCACTTAACTGGACTACGAGTGTGTAATTGTTTTTGGTTCGGCTCAGGTTTCATTTGAAAATGTCAGTGTGGCTCAATCTAGTTTAGTATGTAAGGGTTTGGTGAATCGGTCTGATATCCAAGTTCTTTGTTGCCCATTGGTATGATTTGTAACTGATTGGGAACTATTGCATTGGAGCTGCTAATGTATGAAGTTATTTGATTAATTATGAAATAAATTTATTTCCATTGTTTAAAAGTCTTTGAATTGAAAGTTGTACATGATGAAATAAGAACTTTTTAAGGATTTTGATCAAACTTGTTTTGAATTATCGAGTTGCAGATACTTTCCACGAGTATGCTTTGTTCTTCGTTAAATTTATCTTTATTGTTTCCTTTTTCTTTTGCAGCATATTCAAATGAAATTATGGTCGCGTGACAACTAACTATGCTACAAGAAATATAGTTATATGGCAAAATCTTTGTTTCATAATCTTCGCAGAGCTTCTCTGCTTTTCAGGTCTTCATCTCTGAACCAACCATTTTTCAGGTACTTTTCAGTCAAGGTTCCTCCATCTTCTTAATATTATCGATGTGTTGTACTTTTGAACAGCAGTTTTCATCTTCTTTTCCTTAGATTTTCCACTCTAGTGATAAATTTCTTTGTTGATCCATTGCTTTCAAAAAAATTTAACCTAGCCAACCGGGTTTGAGATTGGAAGAAAATGGCTTGTATTTGACTTTGAAAGACAGAAATAGTGTAGAATATATAACTTTTGATGAATTTTCTGGTTGAATTTTACTGTGTTTACATCATATATTCTGTTGCAGACCTGTTCTTGGGGTTCCTGACTCTACTTTCTCTCGTATAAAAAACTTTCCTCTGCTGAACATCTCAAAACCTTTGTTGGGATTTAGAAATTTAAGCTATGGTTCCGTGAATCTTGTCATATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTGGATCCTCCAAAAAAAGATAAGTGGAAGACTAAGAAAAAATTGAAGATGCAGCGAAAGAGAGAGAAGCAGAAAAGAAAAGCAGCAAATAAGAAAGACCCTCGTCAACTGCGTGTAAAGGGGAAGAAAAAGCAGAAATTTTCAAATGCAGAAGAGAGAATCAAGCACAAGCTTGAAAAGGTAAGTAAAAAAAGAATGGTTTCAGAATGTTATATGGGTCTATATTGTTAAAGTCCAGCTTATTTTATGGTATCACCAATGTTTTTGGCGAAGTTTGCTCATTTCAAAAGAAAAAGAATTACTTTATGAGCATTTCTCTTCATTCTGCTGCTGAACTGCAGCGAGATGGTTTTCAAATTAATGGATGTTGGAAATTTTTCATATGATTTCAGTTACAGTTATAGTGATTTTGCTGCAGGCCAGGATTAAAGAAGCATTACTGATTGAGAGATTGAAACGGTATGAAGTTCCTAGAGTTCAGGGTCCTGTGGTGGAACCACACAATCTGACTGCAGAGGAACGGTTTTATATGAAGAAAATGGGTCAAAAGAGGTCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTTTAAACATGCACATGCATTGGAAGAAACACGAAACAGTTAAAGTTTTTTGCAAACCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATTGGTGATGATACTATCATCTTCTATCGAGGAAAGGAATATGTGCAACCAGAAGTTATGTCACCAATTGATACATTGTCTAAGAAACGGGTTAGTTTTTAAAATTTTCAGTTTTCATTAATGTATATGATGTCTTTTTCTTTTCTTTCTCTTTTTTATAATCGGAGTTCGTGGGCCAGTGCATCTTTATTTAAGACATAATAGTACGGGAGGATATCAGTAGGACTATTTGGCTTTTCGACCATAAAATATGTGCGTGGGAGTCGGCTGTGTAGTTAAGTAATGGTATTGAAGTTAGAGAAGTGTGAGTTTCTCCTAAGCATATACTTTTCGTTTTTGGATTGATGGAGTGTCAAATACATGGGAGGGAGAATTCAATCCTCTCCGGAGAGTGTAACGGCCCAAGCCCACTGCTAGCAGATATTGTCCTCTTTGAGTTTTCTCTTTTGGGCTTTTCCTCAAGGTTCTTAAGGCACGTCTGCTAGGGAGAGATTTCCACACCCTTATAAAGAAGCTTTCGTTCTCCTCTCCAACTGATGTGGGTCTCACAGGGAGTTTGTCAAGTTTTGACTCTTGTTGTGTGATTCCTATCAAGCTGTCAGTGTCGGTACCTAGAAAATAGTGCAGCTTTTCCATTTTCATGTTTAGATTAGCTTGATCAGAGAATAACGTGCTGACATTAGATTGTTGTACGAAAAGCTTTCATTTAACAGCAAATACCAAATGTTGCAAACTTGGTCTGTCTAATTAGATTTAATAGTTGTGTTATGGTATTGTTGGCCTTTTGTTATCCAATCTGTTTGCTGCATGTATGCTTAAAACCTCAATGTTCATGTTTATGTGGATTCTGTTTGTAGGAAATTGATTATTAATAAAACATACCAATGGCTTCCCTCCTTGCAGGCACTAGAAAAGTCCAAGTACGAGCAGTCCCTCGAGTCTGTTCGCCGATTCATTGCCATTGCTGAAAAGGAACTGGAGCTATATTACAGGCATGTTGCACTTTATGGTGACCCGAATGATAGGAATCCATTGTCCATCTTAGACCTTCCATCTGACAACTTGAAGAACTCACTGAAACATCAAGTCGATGAAATGGAAGACTCTCATTCTGCTGCTCTTTGCTTAGCATCTGATGTTATGAACAAGCGAAATCCTGAATTTTCGGATGACGAATCATTAGAGATTGGAGAAGAATTTGCAGATTCCTGCTTTTCTACAAGTGAATCAGAATTTGAAAGTGACATATTAGATGATTTTGAACATGGGAGGATCGAAGGAAGTTTTTCTCAGACAGGAGAGATGTCCTCAACCACAATGAACACTTGTTCAGCTTCCCAGAACAAATTTGAGTTTCATAACCAAGAACTACCAATACACATAAAAATGACATGAGACTGCAACCTGATTTTTTGTTCGACTTCAATGGATCTATGATCCAATGAAAACATGAGTTCATAGATGTATACCCAAACATTTTCAGAAATTATAGTAACTAACCGTTTCTAAGATGATATGAGCATGGGAAAATTTGAC

mRNA sequence

ATGAAATAAACGTTAGCGCCACCTCGCCCTGCTCCATCTCTACCTAGAGTCGACTTGTTATCGGTTCGAGCCGACTCCTATTGGCTTGGGTTCAGCTCTCGCACCAATTCTCACCACCGTGGCTCACCATCGATCTCTCTCTCTCTCTCTCTCTGCGCAGGGTTTAGTCTCATTCACACTACCGTCGATTCTCTCTCCCAGCGTTGCCGTCGGTTGCTTTGACACGCGGCTGGTCTCTCGGATTCCCGCTTCCTCTAGGGACAGCACCGATATCCTCAGCATATTCAAATGAAATTATGGTCGCGTGACAACTAACTATGCTACAAGAAATATAGTTATATGGCAAAATCTTTGTTTCATAATCTTCGCAGAGCTTCTCTGCTTTTCAGGTCTTCATCTCTGAACCAACCATTTTTCAGACCTGTTCTTGGGGTTCCTGACTCTACTTTCTCTCGTATAAAAAACTTTCCTCTGCTGAACATCTCAAAACCTTTGTTGGGATTTAGAAATTTAAGCTATGGTTCCGTGAATCTTGTCATATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTGGATCCTCCAAAAAAAGATAAGTGGAAGACTAAGAAAAAATTGAAGATGCAGCGAAAGAGAGAGAAGCAGAAAAGAAAAGCAGCAAATAAGAAAGACCCTCGTCAACTGCGTGTAAAGGGGAAGAAAAAGCAGAAATTTTCAAATGCAGAAGAGAGAATCAAGCACAAGCTTGAAAAGTCCAGCTTATTTTATGGTATCACCAATGTTTTTGGCGAAGTTTGCTCATTTCAAAAGAAAAAGAATTACTTTATGAGCATTTCTCTTCATTCTGCTGCTGAACTGCAGCGAGATGTTACAGTTATAGTGATTTTGCTGCAGGCCAGGATTAAAGAAGCATTACTGATTGAGAGATTGAAACGGTATGAAGTTCCTAGAGTTCAGGGTCCTGTGGTGGAACCACACAATCTGACTGCAGAGGAACGGTTTTATATGAAGAAAATGGGTCAAAAGAGGTCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTTTAAACATGCACATGCATTGGAAGAAACACGAAACAGTTAAAGTTTTTTGCAAACCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATTGGTGATGATACTATCATCTTCTATCGAGGAAAGGAATATGTGCAACCAGAAGTTATGTCACCAATTGATACATTGTCTAAGAAACGGGCACTAGAAAAGTCCAAGTACGAGCAGTCCCTCGAGTCTGTTCGCCGATTCATTGCCATTGCTGAAAAGGAACTGGAGCTATATTACAGGCATGTTGCACTTTATGGTGACCCGAATGATAGGAATCCATTGTCCATCTTAGACCTTCCATCTGACAACTTGAAGAACTCACTGAAACATCAAGTCGATGAAATGGAAGACTCTCATTCTGCTGCTCTTTGCTTAGCATCTGATGTTATGAACAAGCGAAATCCTGAATTTTCGGATGACGAATCATTAGAGATTGGAGAAGAATTTGCAGATTCCTGCTTTTCTACAAGTGAATCAGAATTTGAAAGTGACATATTAGATGATTTTGAACATGGGAGGATCGAAGGAAGTTTTTCTCAGACAGGAGAGATGTCCTCAACCACAATGAACACTTGTTCAGCTTCCCAGAACAAATTTGAGTTTCATAACCAAGAACTACCAATACACATAAAAATGACATGAGACTGCAACCTGATTTTTTGTTCGACTTCAATGGATCTATGATCCAATGAAAACATGAGTTCATAGATGTATACCCAAACATTTTCAGAAATTATAGTAACTAACCGTTTCTAAGATGATATGAGCATGGGAAAATTTGAC

Coding sequence (CDS)

ATGGCAAAATCTTTGTTTCATAATCTTCGCAGAGCTTCTCTGCTTTTCAGGTCTTCATCTCTGAACCAACCATTTTTCAGACCTGTTCTTGGGGTTCCTGACTCTACTTTCTCTCGTATAAAAAACTTTCCTCTGCTGAACATCTCAAAACCTTTGTTGGGATTTAGAAATTTAAGCTATGGTTCCGTGAATCTTGTCATATCCCAAGGGAAACCAAAGTTTGAAACACATGAAGTGGATCCTCCAAAAAAAGATAAGTGGAAGACTAAGAAAAAATTGAAGATGCAGCGAAAGAGAGAGAAGCAGAAAAGAAAAGCAGCAAATAAGAAAGACCCTCGTCAACTGCGTGTAAAGGGGAAGAAAAAGCAGAAATTTTCAAATGCAGAAGAGAGAATCAAGCACAAGCTTGAAAAGTCCAGCTTATTTTATGGTATCACCAATGTTTTTGGCGAAGTTTGCTCATTTCAAAAGAAAAAGAATTACTTTATGAGCATTTCTCTTCATTCTGCTGCTGAACTGCAGCGAGATGTTACAGTTATAGTGATTTTGCTGCAGGCCAGGATTAAAGAAGCATTACTGATTGAGAGATTGAAACGGTATGAAGTTCCTAGAGTTCAGGGTCCTGTGGTGGAACCACACAATCTGACTGCAGAGGAACGGTTTTATATGAAGAAAATGGGTCAAAAGAGGTCTAATTATGTACCTATTGGAAGAAGAGGAGTTTTTGGAGGTGTGATTTTAAACATGCACATGCATTGGAAGAAACACGAAACAGTTAAAGTTTTTTGCAAACCTTGTAAACCTGGCCAAGTGCATGAGTACGCACAGGAAATTGCAAGATTGAGTGGAGGAATCCCAATACAGATAATTGGTGATGATACTATCATCTTCTATCGAGGAAAGGAATATGTGCAACCAGAAGTTATGTCACCAATTGATACATTGTCTAAGAAACGGGCACTAGAAAAGTCCAAGTACGAGCAGTCCCTCGAGTCTGTTCGCCGATTCATTGCCATTGCTGAAAAGGAACTGGAGCTATATTACAGGCATGTTGCACTTTATGGTGACCCGAATGATAGGAATCCATTGTCCATCTTAGACCTTCCATCTGACAACTTGAAGAACTCACTGAAACATCAAGTCGATGAAATGGAAGACTCTCATTCTGCTGCTCTTTGCTTAGCATCTGATGTTATGAACAAGCGAAATCCTGAATTTTCGGATGACGAATCATTAGAGATTGGAGAAGAATTTGCAGATTCCTGCTTTTCTACAAGTGAATCAGAATTTGAAAGTGACATATTAGATGATTTTGAACATGGGAGGATCGAAGGAAGTTTTTCTCAGACAGGAGAGATGTCCTCAACCACAATGAACACTTGTTCAGCTTCCCAGAACAAATTTGAGTTTCATAACCAAGAACTACCAATACACATAAAAATGACATGA

Protein sequence

MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSYGSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGKKKQKFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAAELQRDVTVIVILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFADSCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNKFEFHNQELPIHIKMT

Homology

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BLAST of CmoCh14G005660 vs. ExPASy Swiss-Prot
Match: Q67XL4 (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.6e-38
Identity = 102/238 (42.86%), Postives = 140/238 (58.82%), Query Frame = 0


Query: 183 LLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRGVF 242
           L +AR KE  L+E +K+ E         +P  LT EE FY  KMG K  NYVP+GRRG++
Sbjct: 145 LRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIY 204

Query: 243 GGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKE 302
            GVILNMH+HWKKH+T++V  K   P +V E A E+ARL+GGI + +   +TII YRGK 
Sbjct: 205 QGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKN 264

Query: 303 YVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 362
           YVQP  E+MSP  TL +K+AL+KSK   +L +VR++I   E+EL+L     A      D 
Sbjct: 265 YVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQ---AQAETKRDY 324

Query: 363 NPLSILDLP--SDNLKNSLKHQVDEMEDSH---SAALCLASDVMNKRNPEFSDDESLE 414
             + + D    S+ LK  ++   + +ED      A L LA+D  +  +  F  D  LE
Sbjct: 325 TNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLELATD--SDLSDIFETDSELE 377

[Close]

BLAST of CmoCh14G005660 vs. ExPASy Swiss-Prot
Match: Q9LT57 (CRM-domain containing factor CFM9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CFM9 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.5e-35
Identity = 105/315 (33.33%), Postives = 170/315 (53.97%), Query Frame = 0


Query: 179 VIVILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGR 238
           +I  L +A+ K ALL+++LK+Y++P +  PV +P   T+E+    KK+G K  NYVP+G 
Sbjct: 56  LIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGV 115

Query: 239 RGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFY 298
           RGVFGGV+ NMHMHWK HETV+V C      ++ E A  IARLSGG+ I I    TII +
Sbjct: 116 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMF 175

Query: 299 RGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPN 358
           RG+ Y QP+ + P++TL+K++AL K+++EQ+LES +  I   E++L    R + +    N
Sbjct: 176 RGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQL----RRMGV----N 235

Query: 359 DRNPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEF 418
             +P+++  +    + ++  + +D+ E           D  ++R     + E  E G+E 
Sbjct: 236 PEDPVAMASI--HRVASTFFNAIDKKE---GTPYVFHGDKQSERGTSVDNREESEPGDED 295

Query: 419 AD---------SCFSTSESEF-ESDILDDFEHGRIE-------GSFSQTGEMSSTTMNTC 477
           +D              ++ E+ E +  +  E GRI           S+T E+ S    + 
Sbjct: 296 SDQEELDRFIAEIEEAADKEWEEEEAAEQEESGRIRYWNREEFAGRSRTPELRSYGDASH 355

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BLAST of CmoCh14G005660 vs. ExPASy Swiss-Prot
Match: Q8L7C2 (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CFM2 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.2e-20
Identity = 89/371 (23.99%), Postives = 167/371 (45.01%), Query Frame = 0


Query: 124 KFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAAELQRDVTVIVIL 183
           K +  EE IK +  K  +     +    + + Q K     S      A L++    + + 
Sbjct: 494 KLTENEEEIKPRAVKEDIELEAKDQKDHIQTHQMKSRQRNS----PEAILEKTSMKLSMA 553

Query: 184 LQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRGVFG 243
           L+ +     ++  L+  E P++    ++   +T +E++ ++K+G K   ++ +GRRGVF 
Sbjct: 554 LEKKANAEKVLADLENRESPQLSD--IDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFD 613

Query: 244 GVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPI---QIIGDDTIIFYRG 303
           G I NMH+HWK  E VK+ C        H+ A+ +   SGGI +    +     II YRG
Sbjct: 614 GTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRG 673

Query: 304 KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPND- 363
           K Y +P+ + P   LSK+ AL++S   Q  +S++  +      +E   R +      N+ 
Sbjct: 674 KNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKLSNNIEELNRQLVEDSATNET 733

Query: 364 ----RNPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIG 423
                +   +++  ++N     +   +++E  +S+ L + S          S +E+ E  
Sbjct: 734 WSDGESSNMMVEEETENQHTEPEKAREKIELGYSSDLSVPS----------SGEENWEDD 793

Query: 424 EEFADSCFSTSESEFESDILDDFEHGRIEGS----------FSQTGEMSSTTMNTCSASQ 477
            E      +TS  E++ D  +     R EG+          F++TG  ++++ +  S   
Sbjct: 794 SEGEVDPLTTSSQEYQEDESESASSQRHEGNSLDSTANLSVFAETGSANASSFHDRSLPH 848

[Close]

BLAST of CmoCh14G005660 vs. ExPASy Swiss-Prot
Match: F4JVH1 (CRM-domain containing factor CFM3B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CFM3B PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-17
Identity = 70/234 (29.91%), Postives = 113/234 (48.29%), Query Frame = 0


Query: 215 LTAEERFYMKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEY 274
           +T EERF  +K+G K   ++ +GRRGVF G + NMH+HWK  E +K+  K        + 
Sbjct: 665 ITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGAQKV 724

Query: 275 AQEIARLSGGIPI---QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLE 334
           A  +   SGGI +   +I     +I YRGK+Y +P  + P + L+K++AL +S   Q  E
Sbjct: 725 AMALEAESGGILVSVDKISKGYAVIVYRGKDYKRPTTLRPKNLLTKRKALARSLELQKRE 784

Query: 335 SVRRFIAIAE---KELELYYRHVALYGDPNDRNPLSILDLPSDNLKNS-----------L 394
           ++ + I   +   ++L      V L  D  D      LD+   + + +           L
Sbjct: 785 ALIKHIEAIQTRSEQLRAEIEQVELVKDKGDETLYDKLDMAYSSDEETEETDGEEDDVYL 844

Query: 395 KHQVDEMEDSHSAALCLASDVMNKRNPEFSDDES-LEIGEEFADSCFSTSESEF 431
               DE ED     +  A+  +++ + EF  DES  + G+  A S  +T E+ F
Sbjct: 845 DTYEDEGEDDEEGGI-QANGSLSETDVEFGSDESDTDFGDNSASS--TTPETTF 895

[Close]

BLAST of CmoCh14G005660 vs. ExPASy Swiss-Prot
Match: F4J2U9 (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CFM3A PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.3e-17
Identity = 67/230 (29.13%), Postives = 111/230 (48.26%), Query Frame = 0


Query: 211 EPHNLTAEERFYMKKMGQKRSNYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPCKPGQ 270
           +P ++T EERF  +K+G K   ++ +GRRGVF G + NMH+HWK  E VK+  K      
Sbjct: 634 DPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDG 693

Query: 271 VHEYAQEIARLSGGIPI---QIIGDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYE 330
           V + A  +   SGGI +   ++     II YRG++Y +P ++ P + L+K++AL +S   
Sbjct: 694 VKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIEL 753

Query: 331 QSLESVRRFIAIAE---KELELYYRHVALYGDPNDRNPLSILDLPSDNLKNSLKHQVDEM 390
           Q  E + + I+  +   K+L      +    D  D    + LD+       S   + DE 
Sbjct: 754 QRREGLLKHISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDM----AYASSDEETDEE 813

Query: 391 EDSHSAALCLASDVMNKRNPE-FSDDESLEIGEEFADSCFSTSESEFESD 434
           +D  +              PE +++ E  E GE  A     T + + +S+
Sbjct: 814 DDDDAF-------------PETYAEGEDGEEGEILAGELSETEDKDLDSN 846

[Close]

BLAST of CmoCh14G005660 vs. ExPASy TrEMBL
Match: A0A6J1F621 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442450 PE=4 SV=1)

HSP 1 Score: 825.5 bits (2131), Expect = 1.2e-235
Identity = 435/482 (90.25%), Postives = 435/482 (90.25%), Query Frame = 0


Query: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60
           MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60

Query: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120
           GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120

Query: 121 KKQKFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAAELQRDVTVI 180
           KKQKFSNAEERIKHKLEK                                          
Sbjct: 121 KKQKFSNAEERIKHKLEK------------------------------------------ 180

Query: 181 VILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 240
                ARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG
Sbjct: 181 -----ARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 240

Query: 241 VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300
           VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG
Sbjct: 241 VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300

Query: 301 KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 360
           KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR
Sbjct: 301 KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 360

Query: 361 NPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFAD 420
           NPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFAD
Sbjct: 361 NPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFAD 420

Query: 421 SCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNKFEFHNQELPIHIK 480
           SCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNKFEFHNQELPIHIK
Sbjct: 421 SCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNKFEFHNQELPIHIK 435

Query: 481 MT 483
           MT
Sbjct: 481 MT 435

[Close]

BLAST of CmoCh14G005660 vs. ExPASy TrEMBL
Match: A0A5A7UFD6 (CRM-domain containing factor CFM3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007520 PE=4 SV=1)

HSP 1 Score: 713.4 bits (1840), Expect = 6.5e-202
Identity = 376/478 (78.66%), Postives = 403/478 (84.31%), Query Frame = 0


Query: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60
           MAKSLFHNLRRASLLFRSSSLNQ  FRP+L +PD+ FS+IKNFP  NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQLSFRPILVIPDTVFSQIKNFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120
           GSVNLV++QGKPKFETH VDPPKK+KWKTKKKLKMQR R KQKRKAANK+DPRQLRVKGK
Sbjct: 61  GSVNLVVTQGKPKFETHVVDPPKKEKWKTKKKLKMQRMRSKQKRKAANKRDPRQLRVKGK 120

Query: 121 KKQKFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAAELQRDVTVI 180
           KKQKF NA ERIK+KLE+                                          
Sbjct: 121 KKQKFPNAAERIKNKLER------------------------------------------ 180

Query: 181 VILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 240
                ARIKEALLIERLKRYEVP VQGP+V+PHNLTAEERFY+KKMGQKRSNYVPIGRRG
Sbjct: 181 -----ARIKEALLIERLKRYEVPEVQGPIVKPHNLTAEERFYIKKMGQKRSNYVPIGRRG 240

Query: 241 VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300
           VFGGVILNMHMHWKKHETVKV+CKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG
Sbjct: 241 VFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300

Query: 301 KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 360
           KEYVQPEVMSPI TLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRH+ALYGDPNDR
Sbjct: 301 KEYVQPEVMSPIGTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDR 360

Query: 361 NPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFAD 420
           NPLSIL++PSDNLKNS KHQ+  MEDSHSAALCL SDVMN+RNP+FSDDESL+IG+EF D
Sbjct: 361 NPLSILNVPSDNLKNSDKHQITNMEDSHSAALCLESDVMNQRNPDFSDDESLDIGDEFGD 420

Query: 421 SCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNKFEFHNQELPIH 479
           +CFSTSES+FESD LD+ + GRIE S SQT EM STTMNTCSA QNK EFH QELPIH
Sbjct: 421 ACFSTSESDFESDKLDESDDGRIEVSVSQTEEMFSTTMNTCSAFQNKCEFHKQELPIH 431

[Close]

BLAST of CmoCh14G005660 vs. ExPASy TrEMBL
Match: A0A1S3B7C2 (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486957 PE=4 SV=1)

HSP 1 Score: 713.4 bits (1840), Expect = 6.5e-202
Identity = 376/478 (78.66%), Postives = 403/478 (84.31%), Query Frame = 0


Query: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60
           MAKSLFHNLRRASLLFRSSSLNQ  FRP+L +PD+ FS+IKNFP  NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRASLLFRSSSLNQLSFRPILVIPDTVFSQIKNFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120
           GSVNLV++QGKPKFETH VDPPKK+KWKTKKKLKMQR R KQKRKAANK+DPRQLRVKGK
Sbjct: 61  GSVNLVVTQGKPKFETHVVDPPKKEKWKTKKKLKMQRMRSKQKRKAANKRDPRQLRVKGK 120

Query: 121 KKQKFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAAELQRDVTVI 180
           KKQKF NA ERIK+KLE+                                          
Sbjct: 121 KKQKFPNAAERIKNKLER------------------------------------------ 180

Query: 181 VILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 240
                ARIKEALLIERLKRYEVP VQGP+V+PHNLTAEERFY+KKMGQKRSNYVPIGRRG
Sbjct: 181 -----ARIKEALLIERLKRYEVPEVQGPIVKPHNLTAEERFYIKKMGQKRSNYVPIGRRG 240

Query: 241 VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300
           VFGGVILNMHMHWKKHETVKV+CKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG
Sbjct: 241 VFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300

Query: 301 KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 360
           KEYVQPEVMSPI TLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRH+ALYGDPNDR
Sbjct: 301 KEYVQPEVMSPIGTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDR 360

Query: 361 NPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFAD 420
           NPLSIL++PSDNLKNS KHQ+  MEDSHSAALCL SDVMN+RNP+FSDDESL+IG+EF D
Sbjct: 361 NPLSILNVPSDNLKNSDKHQITNMEDSHSAALCLESDVMNQRNPDFSDDESLDIGDEFGD 420

Query: 421 SCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNKFEFHNQELPIH 479
           +CFSTSES+FESD LD+ + GRIE S SQT EM STTMNTCSA QNK EFH QELPIH
Sbjct: 421 ACFSTSESDFESDKLDESDDGRIEVSVSQTEEMFSTTMNTCSAFQNKCEFHKQELPIH 431

[Close]

BLAST of CmoCh14G005660 vs. ExPASy TrEMBL
Match: A0A6J1J3F1 (uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482313 PE=4 SV=1)

HSP 1 Score: 692.2 bits (1785), Expect = 1.5e-195
Identity = 367/425 (86.35%), Postives = 369/425 (86.82%), Query Frame = 0


Query: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60
           MAKSLFHNLRRASLLFRS SL QPFFRPVLGVPDSTFS IKN PLLNISKP LGFRNLSY
Sbjct: 1   MAKSLFHNLRRASLLFRSLSLKQPFFRPVLGVPDSTFSHIKNIPLLNISKPFLGFRNLSY 60

Query: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120
           GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQR REKQKRKAANKKDPRQLRVKGK
Sbjct: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRMREKQKRKAANKKDPRQLRVKGK 120

Query: 121 KKQKFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAAELQRDVTVI 180
           KKQKFSNAEERIKHKLEK                                          
Sbjct: 121 KKQKFSNAEERIKHKLEK------------------------------------------ 180

Query: 181 VILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 240
                ARIKEALLIERLKRYEVP+VQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG
Sbjct: 181 -----ARIKEALLIERLKRYEVPKVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 240

Query: 241 VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300
           VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG
Sbjct: 241 VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300

Query: 301 KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 360
           KEYVQP VMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR
Sbjct: 301 KEYVQPVVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 360

Query: 361 NPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFAD 420
           NPLSILDLPSDNLKNS KHQVDEMEDSHSA+LCLASDVMNKRNPEFSDDESLEIGEE AD
Sbjct: 361 NPLSILDLPSDNLKNSQKHQVDEMEDSHSASLCLASDVMNKRNPEFSDDESLEIGEELAD 378

Query: 421 SCFST 426
           SCFST
Sbjct: 421 SCFST 378

[Close]

BLAST of CmoCh14G005660 vs. ExPASy TrEMBL
Match: A0A0A0LF61 (CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G823620 PE=4 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 1.9e-185
Identity = 352/478 (73.64%), Postives = 382/478 (79.92%), Query Frame = 0


Query: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60
           MAKSLFHNLRRA LLFRSSSLNQ  FRP+L +PD+ FS+IK FP  NISKPLLGFRNLS+
Sbjct: 1   MAKSLFHNLRRAPLLFRSSSLNQLSFRPILEIPDTVFSQIKKFPEANISKPLLGFRNLSH 60

Query: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120
           GSVNLV+SQGKPKFETHEVDPPKK+KWKTKKKLKMQR R KQKRKAANK+DPRQLR    
Sbjct: 61  GSVNLVVSQGKPKFETHEVDPPKKEKWKTKKKLKMQRMRLKQKRKAANKRDPRQLR---- 120

Query: 121 KKQKFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAAELQRDVTVI 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 VILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 240
                ARIKEALLIERL+RYEVP+VQGP+V+PH+LT EERFY+KKMGQKRSNYVPIGRRG
Sbjct: 181 -----ARIKEALLIERLRRYEVPKVQGPMVKPHDLTGEERFYIKKMGQKRSNYVPIGRRG 240

Query: 241 VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300
           VFGGVILNMHMHWKKHETVKV+CKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG
Sbjct: 241 VFGGVILNMHMHWKKHETVKVYCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300

Query: 301 KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 360
           K+YVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRH+ALYGDPNDR
Sbjct: 301 KDYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHIALYGDPNDR 360

Query: 361 NPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFAD 420
           NPLSIL++PSDNL NS K+Q+  MEDSHSAALCLASDVMN+RNP+FSDDESL+IG+ FAD
Sbjct: 361 NPLSILNVPSDNL-NSDKYQITNMEDSHSAALCLASDVMNQRNPDFSDDESLDIGDGFAD 408

Query: 421 SCFSTSESEFESDILDDFEHGRIEGSFSQTGEMSSTTMNTCSASQNKFEFHNQELPIH 479
           +CFSTSES+FESD LD+   GR+E S SQT E+SSTTMNTCSA  NK EFH QELPIH
Sbjct: 421 ACFSTSESDFESDKLDESGEGRMEVSVSQTEEISSTTMNTCSAFPNKCEFHKQELPIH 408

[Close]

BLAST of CmoCh14G005660 vs. TAIR 10
Match: AT2G28480.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 401.0 bits (1029), Expect = 1.4e-111
Identity = 241/433 (55.66%), Postives = 284/433 (65.59%), Query Frame = 0


Query: 1   MAKSLFHNLRRASLLFRSSSLNQPFFRPVLGVPDSTFSRIKNFPLLNISKPLLGFRNLSY 60
           MA +    LR+AS   RSS    P       +P S          +  ++P+    +  Y
Sbjct: 1   MAIAFARGLRKASSFLRSS---YPLLISSRLLPISQEFYDSTLTFVLPTRPICRNFSHGY 60

Query: 61  GSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKDPRQLRVKGK 120
           G+VNLVIS+GKPKFET E+DPPKK KW TKK+LK++RK+E+++R AAN+KDPR+L VKGK
Sbjct: 61  GTVNLVISEGKPKFETRELDPPKKYKWLTKKRLKLKRKKEREERNAANRKDPRRLTVKGK 120

Query: 121 KKQKFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAAELQRDVTVI 180
           KK KF NAEERIK+KLEK                                          
Sbjct: 121 KK-KFVNAEERIKYKLEK------------------------------------------ 180

Query: 181 VILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRG 240
                A+IKEALLIERLKRYEV +VQGP V PH +T EERFY+KKMGQKRSNYVPIGRRG
Sbjct: 181 -----AKIKEALLIERLKRYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYVPIGRRG 240

Query: 241 VFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRG 300
           VFGGVILNMH+HWKKHETVKV C   KPGQV +YA+E+A+LSGG+P+ IIGDDTIIFYRG
Sbjct: 241 VFGGVILNMHLHWKKHETVKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRG 300

Query: 301 KEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 360
           K YVQP+VMSPIDTLSKKRA EKSKYEQSLESVR FIAIAEKELELYYRHVALY DPN+R
Sbjct: 301 KGYVQPQVMSPIDTLSKKRAYEKSKYEQSLESVRHFIAIAEKELELYYRHVALYDDPNNR 360

Query: 361 NPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEFAD 420
           NPLSILD   D+   S +H  +E            SD  +    E  D+E  E+ +  + 
Sbjct: 361 NPLSILD---DSPSESRQHHENEF-------FLSCSDTDSSSEDEDEDEELCEL-DNGSS 371

Query: 421 SCFSTSESEFESD 434
           S  S  E   ES+
Sbjct: 421 SSSSAKEELSESE 371

[Close]

BLAST of CmoCh14G005660 vs. TAIR 10
Match: AT4G13070.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 214.2 bits (544), Expect = 2.4e-55
Identity = 132/309 (42.72%), Postives = 177/309 (57.28%), Query Frame = 0


Query: 52  LLGFRNLSYGSVNLVISQGKPKFETHEVDPPKKDKWKTKKKLKMQRKREKQKRKAANKKD 111
           L   R LS  ++ L       +F  + V     +   T+K+ K +R +  +K K     +
Sbjct: 69  LFSRRYLSNSTIELRTDDNVVRFAFNNVSSSGNNVVPTRKEKKWKRAKLSRKAKV---NE 128

Query: 112 PRQLRVKGKKKQKFSNAEERIKHKLEKSSLFYGITNVFGEVCSFQKKKNYFMSISLHSAA 171
            R  R+K KKK    N E RI++KLEK                                 
Sbjct: 129 LRFYRLKAKKKMNSPNPEVRIRYKLEK--------------------------------- 188

Query: 172 ELQRDVTVIVILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRS 231
                         A+ KE  LIE+L++Y+VP+      +P +LT EE+ Y+K+ G+KR 
Sbjct: 189 --------------AKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRK 248

Query: 232 NYVPIGRRGVFGGVILNMHMHWKKHETVKVFCKPC-KPGQVHEYAQEIARLSGGIPIQII 291
           N+V +GRRGVFGGV+LN+H+HWKKHETVKV CKPC KPGQVHEYA+E+ARLS GI I + 
Sbjct: 249 NFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVK 308

Query: 292 GDDTIIFYRGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRH 351
            ++TI+ YRGK YV+PEVMSP+DTLSK +ALEK +YEQSLE    FI   EKELE Y+++
Sbjct: 309 PNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEEYHKY 327

Query: 352 VALYGDPND 360
           VA +    D
Sbjct: 369 VARHKKKKD 327

[Close]

BLAST of CmoCh14G005660 vs. TAIR 10
Match: AT3G25440.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-39
Identity = 102/238 (42.86%), Postives = 140/238 (58.82%), Query Frame = 0


Query: 183 LLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRGVF 242
           L +AR KE  L+E +K+ E         +P  LT EE FY  KMG K  NYVP+GRRG++
Sbjct: 145 LRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIY 204

Query: 243 GGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKE 302
            GVILNMH+HWKKH+T++V  K   P +V E A E+ARL+GGI + +   +TII YRGK 
Sbjct: 205 QGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKN 264

Query: 303 YVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 362
           YVQP  E+MSP  TL +K+AL+KSK   +L +VR++I   E+EL+L     A      D 
Sbjct: 265 YVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQ---AQAETKRDY 324

Query: 363 NPLSILDLP--SDNLKNSLKHQVDEMEDSH---SAALCLASDVMNKRNPEFSDDESLE 414
             + + D    S+ LK  ++   + +ED      A L LA+D  +  +  F  D  LE
Sbjct: 325 TNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLELATD--SDLSDIFETDSELE 377

[Close]

BLAST of CmoCh14G005660 vs. TAIR 10
Match: AT3G25440.2 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-39
Identity = 102/238 (42.86%), Postives = 140/238 (58.82%), Query Frame = 0


Query: 183 LLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGRRGVF 242
           L +AR KE  L+E +K+ E         +P  LT EE FY  KMG K  NYVP+GRRG++
Sbjct: 81  LRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIY 140

Query: 243 GGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFYRGKE 302
            GVILNMH+HWKKH+T++V  K   P +V E A E+ARL+GGI + +   +TII YRGK 
Sbjct: 141 QGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRGKN 200

Query: 303 YVQP--EVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDR 362
           YVQP  E+MSP  TL +K+AL+KSK   +L +VR++I   E+EL+L     A      D 
Sbjct: 201 YVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQ---AQAETKRDY 260

Query: 363 NPLSILDLP--SDNLKNSLKHQVDEMEDSH---SAALCLASDVMNKRNPEFSDDESLE 414
             + + D    S+ LK  ++   + +ED      A L LA+D  +  +  F  D  LE
Sbjct: 261 TNVKVDDNQERSEELKKIIERSEECLEDEQEEDEAGLELATD--SDLSDIFETDSELE 313

[Close]

BLAST of CmoCh14G005660 vs. TAIR 10
Match: AT3G27550.1 (RNA-binding CRS1 / YhbY (CRM) domain protein )

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-36
Identity = 105/315 (33.33%), Postives = 170/315 (53.97%), Query Frame = 0


Query: 179 VIVILLQARIKEALLIERLKRYEVPRVQGPVVEPHNLTAEERFYMKKMGQKRSNYVPIGR 238
           +I  L +A+ K ALL+++LK+Y++P +  PV +P   T+E+    KK+G K  NYVP+G 
Sbjct: 56  LIYNLKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGV 115

Query: 239 RGVFGGVILNMHMHWKKHETVKVFCKPCKPGQVHEYAQEIARLSGGIPIQIIGDDTIIFY 298
           RGVFGGV+ NMHMHWK HETV+V C      ++ E A  IARLSGG+ I I    TII +
Sbjct: 116 RGVFGGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMF 175

Query: 299 RGKEYVQPEVMSPIDTLSKKRALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPN 358
           RG+ Y QP+ + P++TL+K++AL K+++EQ+LES +  I   E++L    R + +    N
Sbjct: 176 RGRNYRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQL----RRMGV----N 235

Query: 359 DRNPLSILDLPSDNLKNSLKHQVDEMEDSHSAALCLASDVMNKRNPEFSDDESLEIGEEF 418
             +P+++  +    + ++  + +D+ E           D  ++R     + E  E G+E 
Sbjct: 236 PEDPVAMASI--HRVASTFFNAIDKKE---GTPYVFHGDKQSERGTSVDNREESEPGDED 295

Query: 419 AD---------SCFSTSESEF-ESDILDDFEHGRIE-------GSFSQTGEMSSTTMNTC 477
           +D              ++ E+ E +  +  E GRI           S+T E+ S    + 
Sbjct: 296 SDQEELDRFIAEIEEAADKEWEEEEAAEQEESGRIRYWNREEFAGRSRTPELRSYGDASH 355

The following BLAST results are available for this feature:

BLAST of CmoCh14G005660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q67XL4	2.6e-38	42.86	Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabid...	[more]
Q9LT57	3.5e-35	33.33	CRM-domain containing factor CFM9, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q8L7C2	9.2e-20	23.99	CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
F4JVH1	1.5e-17	29.91	CRM-domain containing factor CFM3B, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
F4J2U9	4.3e-17	29.13	CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis t...	[more]

BLAST of CmoCh14G005660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F621	1.2e-235	90.25	uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb...	[more]
A0A5A7UFD6	6.5e-202	78.66	CRM-domain containing factor CFM3 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3B7C2	6.5e-202	78.66	CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Cucumis melo O...	[more]
A0A6J1J3F1	1.5e-195	86.35	uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Cucurb...	[more]
A0A0A0LF61	1.9e-185	73.64	CRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G823620 PE=4 SV...	[more]

BLAST of CmoCh14G005660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28480.1	1.4e-111	55.66	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT4G13070.1	2.4e-55	42.72	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G25440.1	1.8e-39	42.86	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G25440.2	1.8e-39	42.86	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]
AT3G27550.1	2.5e-36	33.33	RNA-binding CRS1 / YhbY (CRM) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..121
None	No IPR available	PANTHER	PTHR31426:SF2	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	coord: 1..139
None	No IPR available	PANTHER	PTHR31426:SF2	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	coord: 183..436
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 215..299 e-value: 4.3E-25 score: 99.4
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 215..299 e-value: 1.5E-17 score: 63.5
IPR001890	RNA-binding, CRM domain	PROSITE	PS51295	CRM	coord: 213..310 score: 18.727924
IPR035920	YhbY-like superfamily	GENE3D	3.30.110.60		coord: 214..314 e-value: 3.6E-22 score: 80.3
IPR035920	YhbY-like superfamily	SUPERFAMILY	75471	YhbY-like	coord: 214..309
IPR040286	CRM domain-containing protein At3g25440-like	PANTHER	PTHR31426	GROUP II INTRON SPLICING FACTOR CRS1-LIKE	coord: 183..436 coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G005660.1	CmoCh14G005660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding