CmoCh14G005610 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G005610
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Calcium-binding EF-hand family protein
Location	Cmo_Chr14: 2846899 .. 2847456 (-)
RNA-Seq Expression	CmoCh14G005610
Synteny	CmoCh14G005610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCAAATCAAAGCCCCTTCTCCTTCTTCACTATGAAGCTCCCAAAACTCACCGCCAAATCCTTCTCCCCCGGCCGTCTTTTCCCATCCAAAAAGCACCGCACCAGCCTCTCCAAATCCGAGCCCCCTTCCTTCGGCTCCGCCTCATCCTCCTCCCCGACCAGCGTCTTACCGCCTCACCCGCACCCCCACCTCTCCGGCGAATGGTCCGACTTCTCCGACACCCACACCGACTACCGCAAGGAACTGGAAGCTCTACTAGGCCTCATCGGCGCCGAACCGCCGAGCGAAGAGGAGCTCAAGATGATGATGAGCCAAGTAGACAAAGTCGGCCCGCCTTGCCACTCCGAACTGCGAGATACGTTTGAAATCTTCGACGCCGACCACGACGGGAGAATCACGGCGGAGGAGCTTTTCAGTGTGTTCTCCGCCATGGGAGATGAGCAGTGCACGTTGGAGGATTGCCGGCGTATGATAGCCGGAGTGGACAAAAACGGAGATGGGTTCGTGTGCTTCGAGGACTTCGCGGTTATGATGGAGTGCCAGAGATGTTGA

mRNA sequence

ATGGCCGCAAATCAAAGCCCCTTCTCCTTCTTCACTATGAAGCTCCCAAAACTCACCGCCAAATCCTTCTCCCCCGGCCGTCTTTTCCCATCCAAAAAGCACCGCACCAGCCTCTCCAAATCCGAGCCCCCTTCCTTCGGCTCCGCCTCATCCTCCTCCCCGACCAGCGTCTTACCGCCTCACCCGCACCCCCACCTCTCCGGCGAATGGTCCGACTTCTCCGACACCCACACCGACTACCGCAAGGAACTGGAAGCTCTACTAGGCCTCATCGGCGCCGAACCGCCGAGCGAAGAGGAGCTCAAGATGATGATGAGCCAAGTAGACAAAGTCGGCCCGCCTTGCCACTCCGAACTGCGAGATACGTTTGAAATCTTCGACGCCGACCACGACGGGAGAATCACGGCGGAGGAGCTTTTCAGTGTGTTCTCCGCCATGGGAGATGAGCAGTGCACGTTGGAGGATTGCCGGCGTATGATAGCCGGAGTGGACAAAAACGGAGATGGGTTCGTGTGCTTCGAGGACTTCGCGGTTATGATGGAGTGCCAGAGATGTTGA

Coding sequence (CDS)

ATGGCCGCAAATCAAAGCCCCTTCTCCTTCTTCACTATGAAGCTCCCAAAACTCACCGCCAAATCCTTCTCCCCCGGCCGTCTTTTCCCATCCAAAAAGCACCGCACCAGCCTCTCCAAATCCGAGCCCCCTTCCTTCGGCTCCGCCTCATCCTCCTCCCCGACCAGCGTCTTACCGCCTCACCCGCACCCCCACCTCTCCGGCGAATGGTCCGACTTCTCCGACACCCACACCGACTACCGCAAGGAACTGGAAGCTCTACTAGGCCTCATCGGCGCCGAACCGCCGAGCGAAGAGGAGCTCAAGATGATGATGAGCCAAGTAGACAAAGTCGGCCCGCCTTGCCACTCCGAACTGCGAGATACGTTTGAAATCTTCGACGCCGACCACGACGGGAGAATCACGGCGGAGGAGCTTTTCAGTGTGTTCTCCGCCATGGGAGATGAGCAGTGCACGTTGGAGGATTGCCGGCGTATGATAGCCGGAGTGGACAAAAACGGAGATGGGTTCGTGTGCTTCGAGGACTTCGCGGTTATGATGGAGTGCCAGAGATGTTGA

Protein sequence

MAANQSPFSFFTMKLPKLTAKSFSPGRLFPSKKHRTSLSKSEPPSFGSASSSSPTSVLPPHPHPHLSGEWSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHSELRDTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMMECQRC

Homology

[Close]

BLAST of CmoCh14G005610 vs. ExPASy Swiss-Prot
Match: Q9SS31 (Probable calcium-binding protein CML36 OS=Arabidopsis thaliana OX=3702 GN=CML36 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.2e-29
Identity = 89/214 (41.59%), Postives = 118/214 (55.14%), Query Frame = 0


Query: 13  MKLPKLTAKSFSPGRLFPSKKHRTSLSKSEPP-SFGSASSSS-----------------P 72
           MKL KL      P R F   K R+++SKS    SFGSASSSS                 P
Sbjct: 1   MKLAKLI-----PKRFFIRSKDRSTVSKSPTAFSFGSASSSSGQDCKNSGGDGGGGSVTP 60

Query: 73  TSVLPPHPHPHLSGE------WSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQV 132
           TS+LP  P P+   E        D  +     R +LE+LL  +G +P +EEE+ +M+ +V
Sbjct: 61  TSILPEVPSPYSYVEILQAFKLIDRDNDGAVSRHDLESLLSRLGPDPLTEEEINVMLKEV 120

Query: 133 DKVGPPC------------------HSELRDTFEIFDADHDGRITAEELFSVFSAMGDEQ 185
           D  G                      +EL++TFE FDAD DG I+A+EL  VFS +GDE+
Sbjct: 121 DCDGDGTIRLEELASRVVSLDPARDSTELKETFEFFDADRDGLISADELLRVFSTIGDER 180

[Close]

BLAST of CmoCh14G005610 vs. ExPASy Swiss-Prot
Match: P30188 (Probable calcium-binding protein CML35 OS=Arabidopsis thaliana OX=3702 GN=CML35 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-26
Identity = 82/198 (41.41%), Postives = 106/198 (53.54%), Query Frame = 0


Query: 24  SPGRLFPSKKHRTSLSKSEPPSFGSASSSS----------------PTSVLPPHPHPHLS 83
           SP RLF +K  + S+S+SEP SF S +SSS                P SVLP +     +
Sbjct: 11  SPKRLFRTKS-KASVSRSEPSSFSSNASSSSSDGSYGNLKQGPTATPISVLPQNSGDFYT 70

Query: 84  G-----EWSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHS----- 143
                 +  D  D     R +L AL+  +  EPPS+EE+ +M+ +VD     C S     
Sbjct: 71  ELVQAFKLIDRDDDGVVSRGDLAALISRLSHEPPSQEEVSLMLREVDGGDGGCISLEDLA 130

Query: 144 ---------------ELRDTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAG 181
                          ELR+ FEIFD D +G+I+AEEL  VF  +GDE+CTLE+C RMIA 
Sbjct: 131 SRVAGTSGEGSVETEELREVFEIFDVDRNGKISAEELHRVFGVIGDERCTLEECMRMIAT 190

[Close]

BLAST of CmoCh14G005610 vs. ExPASy Swiss-Prot
Match: Q9FYK2 (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana OX=3702 GN=CML25 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-14
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 82  KELEALLGLIGAEPPSEEELKMMMSQVDKVGP-------------------PCHSELRDT 141
           KEL A++  +G E P EEEL+  ++++D+ G                         L+D 
Sbjct: 56  KELGAIMTSLGHEVP-EEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDA 115

Query: 142 FEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM 181
           F ++D D +G I+AEEL  V  ++GDE C++ +CR+MI GVDK+GDG + FE+F +MM
Sbjct: 116 FSVYDIDGNGSISAEELHEVLRSLGDE-CSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171

[Close]

BLAST of CmoCh14G005610 vs. ExPASy Swiss-Prot
Match: Q9C8Y1 (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana OX=3702 GN=CML23 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 75  DTHTDYRKELEALLGLIGAEPP--SEEELKMMMSQVDKVG-------------------- 134
           D + D +  ++ L  +IGA  P  S+EE K MM + D  G                    
Sbjct: 24  DKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSS 83

Query: 135 -PPCHSELRDTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFV 181
                 +L++ F+++D D +GRI+A EL SV   +G E+C+++DC+RMI  VD +GDG V
Sbjct: 84  NNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLG-EKCSIQDCQRMINKVDSDGDGCV 143

[Close]

BLAST of CmoCh14G005610 vs. ExPASy Swiss-Prot
Match: Q8RZB5 (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 GN=CML10 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.9e-12
Identity = 58/172 (33.72%), Postives = 80/172 (46.51%), Query Frame = 0


Query: 30  PSKKHRTSLSKSEP-PSFGSASSSSPTSVLPPHPHPHLSGEWSDFSDTHTDYRKELEALL 89
           P+   R S SKS P P    AS     +  P      +  ++    D     R EL AL 
Sbjct: 7   PALFRRRSGSKSPPLPQADPASGGGSPAPTPEEEMERVFRKFDANGDGRIS-RSELGALF 66

Query: 90  GLIGAEPPSEEELKMMMSQVDKVG--------------------PPCHSELRDTFEIFDA 149
             +G    +++EL  MM++ D  G                         +LR  F +FDA
Sbjct: 67  ESLG-HAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDA 126

Query: 150 DHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM 181
           D +G I+A EL  V   +G E+ T++ CRRMI GVD+NGDG + FE+F VMM
Sbjct: 127 DGNGTISAAELARVLHGLG-EKATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175

[Close]

BLAST of CmoCh14G005610 vs. ExPASy TrEMBL
Match: A0A6J1FB49 (probable calcium-binding protein CML36 OS=Cucurbita moschata OX=3662 GN=LOC111442449 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.5e-101
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MAANQSPFSFFTMKLPKLTAKSFSPGRLFPSKKHRTSLSKSEPPSFGSASSSSPTSVLPP 60
           MAANQSPFSFFTMKLPKLTAKSFSPGRLFPSKKHRTSLSKSEPPSFGSASSSSPTSVLPP
Sbjct: 1   MAANQSPFSFFTMKLPKLTAKSFSPGRLFPSKKHRTSLSKSEPPSFGSASSSSPTSVLPP 60

Query: 61  HPHPHLSGEWSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHSELR 120
           HPHPHLSGEWSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHSELR
Sbjct: 61  HPHPHLSGEWSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHSELR 120

Query: 121 DTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM 180
           DTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM
Sbjct: 121 DTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM 180

Query: 181 ECQRC 186
           ECQRC
Sbjct: 181 ECQRC 185

[Close]

BLAST of CmoCh14G005610 vs. ExPASy TrEMBL
Match: A0A6J1J8Y7 (probable calcium-binding protein CML36 OS=Cucurbita maxima OX=3661 GN=LOC111482360 PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MAANQSPFSFFTMKLPKLTAKSFSPGRLFPSKKHRTSLSKSEPPSFGSASSSSPTSVLPP 60
           MAANQS FSFFTMKLPK+TAKSFSPGRLFPSKKHRTSLSKSEPPSFGSAS SSPTSVLPP
Sbjct: 1   MAANQSLFSFFTMKLPKITAKSFSPGRLFPSKKHRTSLSKSEPPSFGSASFSSPTSVLPP 60

Query: 61  HPHPHLSGEWSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHSELR 120
           HPHPHLSGEWSDFSDTH DYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGP CHSELR
Sbjct: 61  HPHPHLSGEWSDFSDTHIDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPACHSELR 120

Query: 121 DTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM 180
           DTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM
Sbjct: 121 DTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM 180

Query: 181 ECQRC 186
           ECQRC
Sbjct: 181 ECQRC 185

[Close]

BLAST of CmoCh14G005610 vs. ExPASy TrEMBL
Match: A0A5A7UEZ0 (Putative calcium-binding protein CML35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007460 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.6e-62
Identity = 129/172 (75.00%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 21  KSFSPGRLFPSKKHRTSLSKSEPPSFGSASSSS--------PTSVLPPHPHPHLSGEWSD 80
           KSF+P RLF SK HR+ LS+S+PPSFGSASSSS        PTSVLP       S +W+D
Sbjct: 5   KSFNPNRLFSSKSHRSKLSRSQPPSFGSASSSSSSTSSAGTPTSVLP-------SLDWAD 64

Query: 81  FSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHSELRDTFEIFDADHDG 140
           FSD  T  RKEL+ALLGLIGAEPPSEEE+K+MM ++D+VGP CHSELRDTFEIFDADHDG
Sbjct: 65  FSDP-TLSRKELKALLGLIGAEPPSEEEIKIMMGEMDRVGPACHSELRDTFEIFDADHDG 124

Query: 141 RITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMMECQR 185
           RITAEELFSVF+AMGDE CTLEDCRRMIAGVDKNGDGFVCF+DFA MM+CQR
Sbjct: 125 RITAEELFSVFTAMGDEGCTLEDCRRMIAGVDKNGDGFVCFDDFARMMDCQR 168

[Close]

BLAST of CmoCh14G005610 vs. ExPASy TrEMBL
Match: A0A1S3B7R8 (probable calcium-binding protein CML35 OS=Cucumis melo OX=3656 GN=LOC103486950 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 6.6e-62
Identity = 129/172 (75.00%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 21  KSFSPGRLFPSKKHRTSLSKSEPPSFGSASSSS--------PTSVLPPHPHPHLSGEWSD 80
           KSF+P RLF SK HR+ LS+S+PPSFGSASSSS        PTSVLP       S +W+D
Sbjct: 5   KSFNPNRLFSSKSHRSKLSRSQPPSFGSASSSSSSTSSAGTPTSVLP-------SLDWAD 64

Query: 81  FSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHSELRDTFEIFDADHDG 140
           FSD  T  RKEL+ALLGLIGAEPPSEEE+K+MM ++D+VGP CHSELRDTFEIFDADHDG
Sbjct: 65  FSDP-TLSRKELKALLGLIGAEPPSEEEIKIMMGEMDRVGPACHSELRDTFEIFDADHDG 124

Query: 141 RITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMMECQR 185
           RITAEELFSVF+AMGDE CTLEDCRRMIAGVDKNGDGFVCF+DFA MM+CQR
Sbjct: 125 RITAEELFSVFTAMGDEGCTLEDCRRMIAGVDKNGDGFVCFDDFARMMDCQR 168

[Close]

BLAST of CmoCh14G005610 vs. ExPASy TrEMBL
Match: A0A0A0LFY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G823060 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.1e-60
Identity = 126/171 (73.68%), Postives = 142/171 (83.04%), Query Frame = 0


Query: 21  KSFSPGRLFPSKKHRTSLSKSEPPSFGSASSSS-------PTSVLPPHPHPHLSGEWSDF 80
           KS +P RLF SK HR+ LS+S+PPSFGSASSSS       PTSVLP       S +WSDF
Sbjct: 5   KSLNPNRLFSSKSHRSKLSRSQPPSFGSASSSSSSSAAGTPTSVLP-------SLDWSDF 64

Query: 81  SDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHSELRDTFEIFDADHDGR 140
           SD  T  RKEL+ALLGLIGAEPPSEEE+K+MM ++D+VGP CHSELRDTFEIFDADHDGR
Sbjct: 65  SDP-TLSRKELKALLGLIGAEPPSEEEIKIMMGEMDRVGPTCHSELRDTFEIFDADHDGR 124

Query: 141 ITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMMECQR 185
           ITAEELFSVF+AMGD+ CTLEDC+RMIAGVDKNGDGFVCF+DF  MM+CQR
Sbjct: 125 ITAEELFSVFAAMGDDGCTLEDCQRMIAGVDKNGDGFVCFDDFVRMMDCQR 167

[Close]

BLAST of CmoCh14G005610 vs. TAIR 10
Match: AT3G10190.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-30
Identity = 89/214 (41.59%), Postives = 118/214 (55.14%), Query Frame = 0


Query: 13  MKLPKLTAKSFSPGRLFPSKKHRTSLSKSEPP-SFGSASSSS-----------------P 72
           MKL KL      P R F   K R+++SKS    SFGSASSSS                 P
Sbjct: 1   MKLAKLI-----PKRFFIRSKDRSTVSKSPTAFSFGSASSSSGQDCKNSGGDGGGGSVTP 60

Query: 73  TSVLPPHPHPHLSGE------WSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQV 132
           TS+LP  P P+   E        D  +     R +LE+LL  +G +P +EEE+ +M+ +V
Sbjct: 61  TSILPEVPSPYSYVEILQAFKLIDRDNDGAVSRHDLESLLSRLGPDPLTEEEINVMLKEV 120

Query: 133 DKVGPPC------------------HSELRDTFEIFDADHDGRITAEELFSVFSAMGDEQ 185
           D  G                      +EL++TFE FDAD DG I+A+EL  VFS +GDE+
Sbjct: 121 DCDGDGTIRLEELASRVVSLDPARDSTELKETFEFFDADRDGLISADELLRVFSTIGDER 180

[Close]

BLAST of CmoCh14G005610 vs. TAIR 10
Match: AT2G41410.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 82/198 (41.41%), Postives = 106/198 (53.54%), Query Frame = 0


Query: 24  SPGRLFPSKKHRTSLSKSEPPSFGSASSSS----------------PTSVLPPHPHPHLS 83
           SP RLF +K  + S+S+SEP SF S +SSS                P SVLP +     +
Sbjct: 11  SPKRLFRTKS-KASVSRSEPSSFSSNASSSSSDGSYGNLKQGPTATPISVLPQNSGDFYT 70

Query: 84  G-----EWSDFSDTHTDYRKELEALLGLIGAEPPSEEELKMMMSQVDKVGPPCHS----- 143
                 +  D  D     R +L AL+  +  EPPS+EE+ +M+ +VD     C S     
Sbjct: 71  ELVQAFKLIDRDDDGVVSRGDLAALISRLSHEPPSQEEVSLMLREVDGGDGGCISLEDLA 130

Query: 144 ---------------ELRDTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAG 181
                          ELR+ FEIFD D +G+I+AEEL  VF  +GDE+CTLE+C RMIA 
Sbjct: 131 SRVAGTSGEGSVETEELREVFEIFDVDRNGKISAEELHRVFGVIGDERCTLEECMRMIAT 190

[Close]

BLAST of CmoCh14G005610 vs. TAIR 10
Match: AT1G24620.1 (EF hand calcium-binding protein family )

HSP 1 Score: 81.6 bits (200), Expect = 7.1e-16
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 82  KELEALLGLIGAEPPSEEELKMMMSQVDKVGP-------------------PCHSELRDT 141
           KEL A++  +G E P EEEL+  ++++D+ G                         L+D 
Sbjct: 56  KELGAIMTSLGHEVP-EEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDA 115

Query: 142 FEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDFAVMM 181
           F ++D D +G I+AEEL  V  ++GDE C++ +CR+MI GVDK+GDG + FE+F +MM
Sbjct: 116 FSVYDIDGNGSISAEELHEVLRSLGDE-CSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171

[Close]

BLAST of CmoCh14G005610 vs. TAIR 10
Match: AT1G66400.1 (calmodulin like 23 )

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 46/129 (35.66%), Postives = 69/129 (53.49%), Query Frame = 0


Query: 75  DTHTDYRKELEALLGLIGAEPP--SEEELKMMMSQVDKVG-------------------- 134
           D + D +  ++ L  +IGA  P  S+EE K MM + D  G                    
Sbjct: 24  DKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSS 83

Query: 135 -PPCHSELRDTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFV 181
                 +L++ F+++D D +GRI+A EL SV   +G E+C+++DC+RMI  VD +GDG V
Sbjct: 84  NNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLG-EKCSIQDCQRMINKVDSDGDGCV 143

[Close]

BLAST of CmoCh14G005610 vs. TAIR 10
Match: AT5G37770.1 (EF hand calcium-binding protein family )

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-12
Identity = 31/64 (48.44%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 117 SELRDTFEIFDADHDGRITAEELFSVFSAMGDEQCTLEDCRRMIAGVDKNGDGFVCFEDF 176
           S+L++ FE++D D +GRI+A+EL SV   +G E+C+++DC++MI+ VD +GDG V F++F
Sbjct: 93  SDLKEAFELYDLDGNGRISAKELHSVMKNLG-EKCSVQDCKKMISKVDIDGDGCVNFDEF 152

Query: 177 AVMM 181
             MM
Sbjct: 153 KKMM 155

The following BLAST results are available for this feature:

BLAST of CmoCh14G005610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS31	3.2e-29	41.59	Probable calcium-binding protein CML36 OS=Arabidopsis thaliana OX=3702 GN=CML36 ...	[more]
P30188	1.9e-26	41.41	Probable calcium-binding protein CML35 OS=Arabidopsis thaliana OX=3702 GN=CML35 ...	[more]
Q9FYK2	1.0e-14	38.14	Probable calcium-binding protein CML25 OS=Arabidopsis thaliana OX=3702 GN=CML25 ...	[more]
Q9C8Y1	1.6e-12	35.66	Probable calcium-binding protein CML23 OS=Arabidopsis thaliana OX=3702 GN=CML23 ...	[more]
Q8RZB5	7.9e-12	33.72	Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]

BLAST of CmoCh14G005610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FB49	2.5e-101	100.00	probable calcium-binding protein CML36 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1J8Y7	1.3e-97	97.30	probable calcium-binding protein CML36 OS=Cucurbita maxima OX=3661 GN=LOC1114823...	[more]
A0A5A7UEZ0	6.6e-62	75.00	Putative calcium-binding protein CML35 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3B7R8	6.6e-62	75.00	probable calcium-binding protein CML35 OS=Cucumis melo OX=3656 GN=LOC103486950 P...	[more]
A0A0A0LFY7	2.1e-60	73.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G823060 PE=4 SV=1	[more]

BLAST of CmoCh14G005610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10190.1	2.3e-30	41.59	Calcium-binding EF-hand family protein	[more]
AT2G41410.1	1.4e-27	41.41	Calcium-binding EF-hand family protein	[more]
AT1G24620.1	7.1e-16	38.14	EF hand calcium-binding protein family	[more]
AT1G66400.1	1.1e-13	35.66	calmodulin like 23	[more]
AT5G37770.1	4.7e-12	48.44	EF hand calcium-binding protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 155..183 e-value: 0.0017 score: 27.6 coord: 118..146 e-value: 3.1E-5 score: 33.4
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 118..180 e-value: 5.0E-9 score: 36.5
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 114..149 score: 12.923368
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 151..185 score: 9.603815
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 118..180 e-value: 1.03489E-18 score: 74.1213
None	No IPR available	GENE3D	1.10.238.10		coord: 114..185 e-value: 3.6E-20 score: 74.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..72
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 116..182 coord: 16..114
None	No IPR available	PANTHER	PTHR10891:SF790	CALCIUM-BINDING PROTEIN CML35-RELATED	coord: 116..182 coord: 16..114
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 127..139
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 164..176
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 82..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G005610.1	CmoCh14G005610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding