CmoCh14G005590 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G005590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr14: 2835912 .. 2836864 (-)
RNA-Seq Expression	CmoCh14G005590
Synteny	CmoCh14G005590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGCAAACGTGTTCGACGCGCGTCTTTATATTCCCATTACACGTTGCTCTCTGCCGCTCCACAAAACATCCAAGTGGAGGAGAGGAACCACCGTTAGAGATCAATAGCCTTTGCTATGGAAGTTCATCCGACCTCTTCACTCCAGGGTTTGTGCAAAATTCCTTCTCACCTCTCAACCTTCCTTACGTGTTCTGTTTTCTATTTGCTTCCCATGAAAATCATGCCGATTCGGTAGAATAACTATGCGTTTGATTTTTCTTGAGTTTTAGTTTGGTTACTATTCTTCGTCTTGCTTTTAATTTTGTTTTCATCGAGTATCATTCTGGTTCAATGTTGCTCTCTGGATCTAAACCGACTATTATTTTTAGAGGAATCGATGATGTTGGTAAGAACTGTTTTGTGCATTCTCAAATGCAAATTTTTCATAGAATTGTCAACATTTTCATTGACGAGTTCGAGACAGATCTTGAAAAATCATCCGAAACTCAGTATCTTGTACGTCGGAGTTCATCTGTTAATTTTTGCTGAGAATTTCAATGTCTTCCTTCCTTCCTTCCTCCCTCCCCTCGATTTGAAGTTTTCTTTTCTTTTTCACACCAGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAGCGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTCGAGGCTACGATTCGCAGTGCTCGAGCATATGAAGGACCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAG

mRNA sequence

AAATTGCAAACGTGTTCGACGCGCGTCTTTATATTCCCATTACACGTTGCTCTCTGCCGCTCCACAAAACATCCAAGTGGAGGAGAGGAACCACCGTTAGAGATCAATAGCCTTTGCTATGGAAGTTCATCCGACCTCTTCACTCCAGGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAGCGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTCGAGGCTACGATTCGCAGTGCTCGAGCATATGAAGGACCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAG

Coding sequence (CDS)

ATGGAAGTTCATCCGACCTCTTCACTCCAGGATGAGAGAGAAGATCCTTCTGTGATGGTTGAGAAAGAGGTGACAGAATCAGTTTCAAGCTCACCACAAGATGTGCAAACTAACAGAAGTAGGGAAAATGTCATGAAGACTGAACCTTCTCAACAGATTGGTATCGATGGAGAAGCGAGCATGGAGGCCTCCATGTCGGCTGATGATGTTTTACGGGCTGGAGGGTTTGGTGCGAGGGATGATATTGGTAGTTTTCTTCCTGTTGCAAGTGATTCTACTGACTTCGAGGCTACGATTCGCAGTGCTCGAGCATATGAAGGACCACAGGGGGAGATTTCTAGACCAGGTCTTGGCTGGAAAGAAGCTACAAAAACTGAGTAG

Protein sequence

MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE

Homology

[Close]

BLAST of CmoCh14G005590 vs. ExPASy TrEMBL
Match: A0A6J1F7V5 (uncharacterized protein LOC111441654 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441654 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.2e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEAS 60
           MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEAS
Sbjct: 1   MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEAS 60

Query: 61  MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK 120
           MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK
Sbjct: 61  MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK 120

Query: 121 EATKTE 127
           EATKTE
Sbjct: 121 EATKTE 126

[Close]

BLAST of CmoCh14G005590 vs. ExPASy TrEMBL
Match: A0A6J1J8S5 (uncharacterized protein LOC111482364 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482364 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.4e-58
Identity = 123/126 (97.62%), Postives = 125/126 (99.21%), Query Frame = 0


Query: 1   MEVHPTSSLQDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEAS 60
           MEVHPTSSLQDEREDPSV+VEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIG+DGE S
Sbjct: 1   MEVHPTSSLQDEREDPSVIVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGMDGETS 60

Query: 61  MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK 120
           MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK
Sbjct: 61  MEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWK 120

Query: 121 EATKTE 127
           EATKTE
Sbjct: 121 EATKTE 126

[Close]

BLAST of CmoCh14G005590 vs. ExPASy TrEMBL
Match: A0A6J1F2R7 (uncharacterized protein LOC111441654 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441654 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MEVHPTSSLQ--DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGE 60
           M++ P   +   DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGE
Sbjct: 1   MKIMPIRGIDDVDEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGE 60

Query: 61  ASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLG 120
           ASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLG
Sbjct: 61  ASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLG 120

Query: 121 WKEATKTE 127
           WKEATKTE
Sbjct: 121 WKEATKTE 128

[Close]

BLAST of CmoCh14G005590 vs. ExPASy TrEMBL
Match: A0A6J1J8Z2 (uncharacterized protein LOC111482364 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482364 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.5e-53
Identity = 116/128 (90.62%), Postives = 120/128 (93.75%), Query Frame = 0


Query: 1   MEVHPTSSLQ--DEREDPSVMVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGE 60
           M+V P   +   DEREDPSV+VEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIG+DGE
Sbjct: 1   MKVMPIRGIDDVDEREDPSVIVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGMDGE 60

Query: 61  ASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLG 120
            SMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLG
Sbjct: 61  TSMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLG 120

Query: 121 WKEATKTE 127
           WKEATKTE
Sbjct: 121 WKEATKTE 128

[Close]

BLAST of CmoCh14G005590 vs. ExPASy TrEMBL
Match: A0A6J1F2X6 (uncharacterized protein LOC111441654 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441654 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 8.8e-50
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 19  MVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDVLRAGGFGA 78
           MVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDVLRAGGFGA
Sbjct: 1   MVEKEVTESVSSSPQDVQTNRSRENVMKTEPSQQIGIDGEASMEASMSADDVLRAGGFGA 60

Query: 79  RDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 127
           RDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE
Sbjct: 61  RDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPGLGWKEATKTE 108

[Close]

BLAST of CmoCh14G005590 vs. TAIR 10
Match: AT5G04000.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-21
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 57  GEASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPG 116
           GE +MEAS+SA+DV+RAGGFGA+DDIGSFLPVASDSTDFE +IRSAR YE  Q E+ RPG
Sbjct: 51  GEVNMEASISAEDVIRAGGFGAKDDIGSFLPVASDSTDFEESIRSARDYEEAQPEVQRPG 110

Query: 117 LGW 120
           LG+
Sbjct: 111 LGY 113

[Close]

BLAST of CmoCh14G005590 vs. TAIR 10
Match: AT5G04000.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl. )

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-21
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 57  GEASMEASMSADDVLRAGGFGARDDIGSFLPVASDSTDFEATIRSARAYEGPQGEISRPG 116
           GE +MEAS+SA+DV+RAGGFGA+DDIGSFLPVASDSTDFE +IRSAR YE  Q E+ RPG
Sbjct: 53  GEVNMEASISAEDVIRAGGFGAKDDIGSFLPVASDSTDFEESIRSARDYEEAQPEVQRPG 112

Query: 117 LGW 120
           LG+
Sbjct: 113 LGY 115

The following BLAST results are available for this feature:

BLAST of CmoCh14G005590 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G005590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F7V5	7.2e-60	100.00	uncharacterized protein LOC111441654 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J8S5	1.4e-58	97.62	uncharacterized protein LOC111482364 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F2R7	4.5e-54	92.19	uncharacterized protein LOC111441654 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J8Z2	6.5e-53	90.63	uncharacterized protein LOC111482364 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F2X6	8.8e-50	100.00	uncharacterized protein LOC111441654 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmoCh14G005590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04000.1	3.8e-21	76.19	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G04000.2	3.8e-21	76.19	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..54
None	No IPR available	PANTHER	PTHR37250	OS05G0496000 PROTEIN	coord: 13..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G005590.1	CmoCh14G005590.1	mRNA