CmoCh14G005350 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G005350
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCalcium-transporting ATPase 9, plasma membrane-type-like protein
LocationCmo_Chr14: 2717400 .. 2718075 (-)
RNA-Seq ExpressionCmoCh14G005350
SyntenyCmoCh14G005350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTGCCAAACTGCTACCTATCCATCCCTTTTTATACAGAGATCTTTTCTGTTTGTTTCCCGAGAAAACATGGGTCAGAAAATTTCCCTCTCTCTCCAGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGTAAACAAACCCTTTTCTCTCTCATAATTCACTTCAATTTTCATCTTTCTCTCTCCTTTTTCTATTTTTTTCTAATGAATTTGTGATTTTTTAGGGATTTTCAAATCGACTTTCGATCAGCCATCTGCTCAAGATTTCGTTTTTCAGGTTTTTTTTTTTTTTTTTTTCTCGAGAAAGTTGTTTCATTTTCCGGGAAATTTTCTCGGCAACCAAACAGGCATGATTGAGAAATTGAATTGTGTTTTGATCTATAATTTTTGTAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTCGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAACTTTTTTTATTTTAGTTTTTTTATTATTTTTTTTTTCTTAACCAAAATTTAGAAGTAAAAGGGTTAGTATTTGAAGAAATGCTCACTTTTTTTTAATAGATATAAACTTGGTTAAATTTAAAAAAAA

mRNA sequence

TCTTGCCAAACTGCTACCTATCCATCCCTTTTTATACAGAGATCTTTTCTGTTTGTTTCCCGAGAAAACATGGGTCAGAAAATTTCCCTCTCTCTCCAGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGGATTTTCAAATCGACTTTCGATCAGCCATCTGCTCAAGATTTCGTTTTTCAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTCGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAACTTTTTTTATTTTAGTTTTTTTATTATTTTTTTTTTCTTAACCAAAATTTAGAAGTAAAAGGGTTAGTATTTGAAGAAATGCTCACTTTTTTTTAATAGATATAAACTTGGTTAAATTTAAAAAAAA

Coding sequence (CDS)

ATGGGTCAGAAAATTTCCCTCTCTCTCCAGCGGCTGCTGCTTCTCTTTCTCGGCTTCTCCCTTCTCCTTTCCTCTGTTGCTGTTCCCACCACAAGGATTTTCAAATCGACTTTCGATCAGCCATCTGCTCAAGATTTCGTTTTTCAGGATGTGAGAGATTTGGAGTTCAACGGTGGAGATTTATTTGGAAGATTCGTTTTGGAGAACAATGATTATCCCGGCACCGGAGCAAACAACCACCACGATCCAAACACTCCGGCGAAGCCATAA

Protein sequence

MGQKISLSLQRLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGDLFGRFVLENNDYPGTGANNHHDPNTPAKP
Homology
BLAST of CmoCh14G005350 vs. ExPASy TrEMBL
Match: A0A0A0LHJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 63/97 (64.95%), Postives = 67/97 (69.07%), Query Frame = 0

Query: 1  MGQKISLSLQRLLLLFLGFSLLL---SSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFN 60
          MGQKI        LLFL FS LL   SS+AVPTTRI KSTFD PS Q  V QDVRD+E  
Sbjct: 1  MGQKIF----TFFLLFLAFSFLLSSNSSLAVPTTRILKSTFDHPSYQALVHQDVRDMEII 60

Query: 61 GGDLF-----GRFVLENNDYPGTGANNHHDPNTPAKP 90
           GD F     GR +LENNDYPGTGANNHHDP +PAKP
Sbjct: 61 DGDSFERLFEGRLILENNDYPGTGANNHHDPKSPAKP 93

BLAST of CmoCh14G005350 vs. ExPASy TrEMBL
Match: A0A5A7UDI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G002430 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.3e-18
Identity = 61/98 (62.24%), Postives = 67/98 (68.37%), Query Frame = 0

Query: 1  MGQKISLSLQRLLLLFLGFSLLL---SSVAVPTTRIFKSTFDQ-PSAQDFVFQDVRDLEF 60
          MGQKI        LLFL FS LL   SS AVPTTRI KSTF++ PS Q  V +DVRDLE 
Sbjct: 1  MGQKIF----TFFLLFLAFSFLLSSSSSFAVPTTRILKSTFERHPSYQALVHEDVRDLEI 60

Query: 61 NGGDLF-----GRFVLENNDYPGTGANNHHDPNTPAKP 90
            GD F     GR +LENNDYPGTGANNHHDP +PA+P
Sbjct: 61 IDGDSFERLFEGRLILENNDYPGTGANNHHDPKSPARP 94

BLAST of CmoCh14G005350 vs. ExPASy TrEMBL
Match: A0A6A6KJS2 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.5e-15
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 0

Query: 11 RLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA-QDFVFQDVRD--------LEFNGGDL 70
          RLLLLFLGFS +LSS+AVP+TR  KST + PS+ QDF+ QD  D        L+   G +
Sbjct: 10 RLLLLFLGFSFVLSSLAVPSTRSLKSTEENPSSVQDFLTQDAMDLNLVEEQVLDLGEGYI 69

Query: 71 FGRFVLENNDYPGTGANNHHDPNTPAK 89
           GR  LEN DYPGTGANNHHDP TP +
Sbjct: 70 NGRMDLENTDYPGTGANNHHDPKTPGR 96

BLAST of CmoCh14G005350 vs. ExPASy TrEMBL
Match: B9SI56 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1320880 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 51/84 (60.71%), Postives = 58/84 (69.05%), Query Frame = 0

Query: 12 LLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSA--QDF-VFQDVRDLEFNGGDL----FGR 71
          LLL FLGFS LLSS+AVPTTR  KST D PS+  QDF + Q+  DL   G +L     GR
Sbjct: 10 LLLFFLGFSFLLSSLAVPTTRSLKSTEDNPSSSVQDFLIHQEGMDLSSQGEELDFIIAGR 69

Query: 72 FVLENNDYPGTGANNHHDPNTPAK 89
            LE+ DYPGTGANNHHDP TP +
Sbjct: 70 MDLESTDYPGTGANNHHDPKTPGR 93

BLAST of CmoCh14G005350 vs. ExPASy TrEMBL
Match: A0A5B6ZB32 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-13
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 0

Query: 11  RLLLLFLGFSLLLSSVAVPTTRIFKSTFDQPSAQDFVFQDVRDLEFNGGDLFGRFV---- 70
           RLL+LFLGF  +LSS AVPT+R  KS    P+AQD   Q V D+  +G  L  RF+    
Sbjct: 45  RLLVLFLGFYFVLSSAAVPTSRSLKSIEKDPTAQDLFAQSVMDMRTDGELLEERFIEGRM 104

Query: 71  -LENNDYPGTGANNHHDPNTPAK 89
            +E+NDYPGTGANNHHDP TP +
Sbjct: 105 DIESNDYPGTGANNHHDPKTPGR 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHJ02.3e-2064.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822320 PE=4 SV=1[more]
A0A5A7UDI66.3e-1862.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6A6KJS26.5e-1558.62Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_004666 PE=4 SV=1[more]
B9SI561.6e-1360.71Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1320880 PE=4 SV=1[more]
A0A5B6ZB323.6e-1355.42Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010781... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33474:SF28PROTEIN, PUTATIVE-RELATEDcoord: 6..88
NoneNo IPR availablePANTHERPTHR33474TRANSMEMBRANE PROTEINcoord: 6..88

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G005350.1CmoCh14G005350.1mRNA