CmoCh14G005000 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G005000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	HTH myb-type domain-containing protein
Location	Cmo_Chr14: 2480536 .. 2481369 (-)
RNA-Seq Expression	CmoCh14G005000
Synteny	CmoCh14G005000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGAGGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCGAGCTCAAATGCTGCCATTGATAACAACAGCCATCCGCCGCCGCCGCCTCCTCCGGTTGTTGCTCAGCCGAGTTCTGCTGATTTTGGGGACTGTGGGGACCTGGGGTCCGGCGAGCCTGCGAGAACCCTGAAGCGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTTGATGCTGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCGGTGGTGGTGCTAATGGCGCCGCCGCTTCAGATCTCGCTACTGATCATTTGTTCGCGAGCTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCGTTTGTACCCGTTGGAGCTCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTCTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACAGCGAAGATTTGGATTCGGGTAATGCAACAGAAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAACGATTAA

mRNA sequence

ATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGAGGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCGAGCTCAAATGCTGCCATTGATAACAACAGCCATCCGCCGCCGCCGCCTCCTCCGGTTGTTGCTCAGCCGAGTTCTGCTGATTTTGGGGACTGTGGGGACCTGGGGTCCGGCGAGCCTGCGAGAACCCTGAAGCGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTTGATGCTGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCGGTGGTGGTGCTAATGGCGCCGCCGCTTCAGATCTCGCTACTGATCATTTGTTCGCGAGCTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCGTTTGTACCCGTTGGAGCTCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTCTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACAGCGAAGATTTGGATTCGGGTAATGCAACAGAAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAACGATTAA

Coding sequence (CDS)

ATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGAGGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCGAGCTCAAATGCTGCCATTGATAACAACAGCCATCCGCCGCCGCCGCCTCCTCCGGTTGTTGCTCAGCCGAGTTCTGCTGATTTTGGGGACTGTGGGGACCTGGGGTCCGGCGAGCCTGCGAGAACCCTGAAGCGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTTGATGCTGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCGGTGGTGGTGCTAATGGCGCCGCCGCTTCAGATCTCGCTACTGATCATTTGTTCGCGAGCTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCGTTTGTACCCGTTGGAGCTCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTCTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACAGCGAAGATTTGGATTCGGGTAATGCAACAGAAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAACGATTAA

Protein sequence

MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPVVAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFASSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND

Homology

[Close]

BLAST of CmoCh14G005000 vs. ExPASy Swiss-Prot
Match: O22210 (Transcription factor MYBC1 OS=Arabidopsis thaliana OX=3702 GN=MYBC1 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.0e-59
Identity = 131/212 (61.79%), Postives = 148/212 (69.81%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSN-------------AAI 60
           MRE++ NWF +WEEELPSPEEL+P+SQTLITP LA+AF I S N               +
Sbjct: 1   MREDNPNWFLRWEEELPSPEELIPISQTLITPHLALAFQIGSPNHHLGSKRTTAIYHQKL 60

Query: 61  DNNSHP--PPPPPPVVAQPSSADFGDCGDLGS----GEPARTLKRPRLVWTPQLHKRFVD 120
            +++ P  P P PP +   S    GD  DLGS    GEPARTLKRPRLVWTPQLHKRFVD
Sbjct: 61  QSSTTPTTPTPTPPPMMMNSDFGGGDSTDLGSGSIGGEPARTLKRPRLVWTPQLHKRFVD 120

Query: 121 AVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAA 180
           AV HLGIKNAVPKTIMQLMSV+GLTRENVASHLQKYRLYL+RMQG   G+G G       
Sbjct: 121 AVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLRRMQG---GNGNGITGGHVI 180

Query: 181 ASDLATDHLFASSPVPPHFLHSSRTNSDHFLP 194
            SD ATD LFASSPVP HFL     + D+ +P
Sbjct: 181 VSDSATDRLFASSPVPAHFL-----SPDYLMP 204

[Close]

BLAST of CmoCh14G005000 vs. ExPASy Swiss-Prot
Match: Q9SNB4 (Transcription factor LUX OS=Arabidopsis thaliana OX=3702 GN=LUX PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.2e-37
Identity = 101/222 (45.50%), Postives = 121/222 (54.50%), Query Frame = 0


Query: 5   DSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDI------------------------ 64
           D +  S+WE  LPS E+L  LS +LI P+LA+AF I                        
Sbjct: 15  DGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRG 74

Query: 65  -------SSSNAAIDNNSHPPPPPPPVVAQPSSADFGDCGDLGSGEP------------- 124
                  SSSN  ++         P   ++      GD  D G  +P             
Sbjct: 75  GSSGPNTSSSNNNVEEEDRVGSSSPGSDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGT 134

Query: 125 ----ARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK 179
                +TLKRPRLVWTPQLHKRFVD VAHLGIKNAVPKTIMQLM+V+GLTRENVASHLQK
Sbjct: 135 EDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 194

[Close]

BLAST of CmoCh14G005000 vs. ExPASy Swiss-Prot
Match: Q94DH3 (Transcription factor PCL1 OS=Oryza sativa subsp. japonica OX=39947 GN=PCL1 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.4e-35
Identity = 103/232 (44.40%), Postives = 126/232 (54.31%), Query Frame = 0


Query: 11  KWEEELPSPEELMPLSQTLITPDLAVAF-----------DISSSNAAI----------DN 70
           +WE  LP  +EL PLSQ L+   LA AF           D+  ++AA            +
Sbjct: 21  EWETGLPGADELTPLSQPLVPAGLAAAFRIPPEPGRTLLDVHRASAATVSRLRRASSSSS 80

Query: 71  NSHPPPPPPPVVAQPSSADFGDCGDLGSGEPAR-TLKRPRLVWTPQLHKRFVDAVAHLGI 130
           +S P             A+ G   D G+G     + KR RLVWTPQLHKRFV+ VAHLG+
Sbjct: 81  SSFPAFASKGAGTGADEAESGGGADGGNGNTNNSSSKRARLVWTPQLHKRFVEVVAHLGM 140

Query: 131 KNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATD 190
           KNAVPKTIMQLM+V+GLTRENVASHLQKYRLY+KRMQG+S+         G + S    D
Sbjct: 141 KNAVPKTIMQLMNVEGLTRENVASHLQKYRLYVKRMQGLSN--------EGPSPS----D 200

Query: 191 HLFASSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHH----MAAAAAAAQYH 217
           H+FAS+PVP   LH    +  H  P         HHH     A AA  + YH
Sbjct: 201 HIFASTPVPHASLHDQVPSPYHPHP---------HHHSYNNAAYAATVSSYH 231

[Close]

BLAST of CmoCh14G005000 vs. ExPASy Swiss-Prot
Match: Q9LTH4 (Transcription factor BOA OS=Arabidopsis thaliana OX=3702 GN=BOA PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.1e-33
Identity = 103/258 (39.92%), Postives = 135/258 (52.33%), Query Frame = 0


Query: 11  KWEEELPSPEELMPLSQTLITPDLAVAFDI-----------------------SSSNAA- 70
           +WE  LP+ ++L PLSQ L+   LA+AF +                       SS+NA+ 
Sbjct: 28  EWEIGLPNGDDLTPLSQYLVPSILALAFSMIPERSRTIHDVNRASQITLSSLRSSTNASS 87

Query: 71  -----IDNNSHPPPPPPP-----------VVAQPSSADFGDCGDLGSGEPARTLKRPRLV 130
                +D      P   P              + S+A+ GD G        +T KRPRLV
Sbjct: 88  VMEEVVDRVESSVPGSDPKKQKKSDGGEAAAVEDSTAEEGDSGP--EDASGKTSKRPRLV 147

Query: 131 WTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSG 190
           WTPQLHKRFVD VAHLGIKNAVPKTIMQLM+V+GLTRENVASHLQKYRLYLKR+QG+++ 
Sbjct: 148 WTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRIQGLTTE 207

Query: 191 SGGGGGANGAAASDLATDHLFASSPVPPH-FLHSSRTNSDHFLPFVPVGALQQHHHMAAA 228
                          ++D LF+S+PVPP  F     +N    +P VPV ++         
Sbjct: 208 EDPYS----------SSDQLFSSTPVPPQSFQDGGGSNGKLGVP-VPVPSMVPIPGYGNQ 267

[Close]

BLAST of CmoCh14G005000 vs. ExPASy Swiss-Prot
Match: A2XE31 (Two-component response regulator ORR21 OS=Oryza sativa subsp. indica OX=39946 GN=RR21 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 72/170 (42.35%), Postives = 96/170 (56.47%), Query Frame = 0


Query: 71  DCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENV 130
           D G+L SG+P+ T K+PR+VW+ +LH++FV+AV HLGI  AVPK I++LM+V GLTRENV
Sbjct: 187 DDGELESGDPSSTSKKPRVVWSVELHQQFVNAVNHLGIDKAVPKKILELMNVPGLTRENV 246

Query: 131 ASHLQKYRLYLKRM----QGISS-----GSGGGGGANGAAASDLATDHLFASSPVPPHFL 190
           ASHLQK+RLYLKR+     GI++      S G  G+ G     L    L AS  +PP  L
Sbjct: 247 ASHLQKFRLYLKRIAQHHAGIANPFCPPASSGKVGSLGG----LDFQALAASGQIPPQAL 306

Query: 191 HS------SRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSP 226
            +       R  +   LP    G  Q    +AA      +  +   FG P
Sbjct: 307 AALQDELLGRPTNSLVLP----GRDQSSLRLAAVKGNKPHGEREIAFGQP 348

[Close]

BLAST of CmoCh14G005000 vs. ExPASy TrEMBL
Match: A0A6J1F4V0 (transcription factor MYBC1-like OS=Cucurbita moschata OX=3662 GN=LOC111442136 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 2.4e-156
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPV 60
           MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPV
Sbjct: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPV 60

Query: 61  VAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM 120
           VAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM
Sbjct: 61  VAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM 120

Query: 121 SVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFASSPVPPHF 180
           SVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFASSPVPPHF
Sbjct: 121 SVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFASSPVPPHF 180

Query: 181 LHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIH 240
           LHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIH
Sbjct: 181 LHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIH 240

Query: 241 RLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND 278
           RLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND
Sbjct: 241 RLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND 277

[Close]

BLAST of CmoCh14G005000 vs. ExPASy TrEMBL
Match: A0A6J1J8N8 (transcription factor MYBC1-like OS=Cucurbita maxima OX=3661 GN=LOC111482343 PE=4 SV=1)

HSP 1 Score: 545.4 bits (1404), Expect = 1.3e-151
Identity = 271/277 (97.83%), Postives = 272/277 (98.19%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPV 60
           MREEDSNWFSKWEEELPSP+ELMPLSQTLITPDLAVAFDISSSNA IDNNSH PPPPPPV
Sbjct: 1   MREEDSNWFSKWEEELPSPDELMPLSQTLITPDLAVAFDISSSNAVIDNNSH-PPPPPPV 60

Query: 61  VAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM 120
           VAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM
Sbjct: 61  VAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM 120

Query: 121 SVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFASSPVPPHF 180
           SVDGLTRENVASHLQKYRLYLKRMQGISSGSGG GGANGAA SDLATDHLFASSPVPPHF
Sbjct: 121 SVDGLTRENVASHLQKYRLYLKRMQGISSGSGGSGGANGAATSDLATDHLFASSPVPPHF 180

Query: 181 LHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIH 240
           LHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIH
Sbjct: 181 LHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIH 240

Query: 241 RLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND 278
           RLGAPVSNPATNH EDLDSGNATEGRKVLTLFPTGND
Sbjct: 241 RLGAPVSNPATNHIEDLDSGNATEGRKVLTLFPTGND 276

[Close]

BLAST of CmoCh14G005000 vs. ExPASy TrEMBL
Match: A0A5A7UK93 (Transcription factor PCL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006440 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.3e-127
Identity = 240/288 (83.33%), Postives = 254/288 (88.19%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPV 60
           M+E+DSNWFSKWE+ELPSP+ELMPLSQTLITPDLA+AFDI++SN   D++  PPPPPPPV
Sbjct: 1   MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPLNDSHPPPPPPPPPV 60

Query: 61  VAQPSSADFGDCGDLGSG---EPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIM 120
           + QPSSADF D GDLGSG   EPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIM
Sbjct: 61  IIQPSSADFADSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIM 120

Query: 121 QLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAA-----ASDLATDHLFA 180
           QLMSVDGLTRENVASHLQKYRLYLKRMQGIS GS  GGGANG A     ASD ATDHLFA
Sbjct: 121 QLMSVDGLTRENVASHLQKYRLYLKRMQGISGGS--GGGANGGAGLVSPASDPATDHLFA 180

Query: 181 SSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHH-MAAAAAAAQYHRQVAQFGS--PPNGQ 240
           SSPVPPHFLHS+R NSDHFLPFVPVGALQ HHH MAAAAAAAQYHRQVA FGS  P NGQ
Sbjct: 181 SSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNGQ 240

Query: 241 FERPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND 278
           FE  FLARP+HR+GAPVS P TN+SEDLDSGN T GRKVLTLFPTGND
Sbjct: 241 FENTFLARPVHRVGAPVSTPVTNYSEDLDSGNGTGGRKVLTLFPTGND 286

[Close]

BLAST of CmoCh14G005000 vs. ExPASy TrEMBL
Match: A0A1S3B723 (transcription factor PCL1-like OS=Cucumis melo OX=3656 GN=LOC103486866 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.3e-127
Identity = 240/288 (83.33%), Postives = 254/288 (88.19%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPV 60
           M+E+DSNWFSKWE+ELPSP+ELMPLSQTLITPDLA+AFDI++SN   D++  PPPPPPPV
Sbjct: 1   MKEDDSNWFSKWEQELPSPDELMPLSQTLITPDLALAFDITNSNPLNDSHPPPPPPPPPV 60

Query: 61  VAQPSSADFGDCGDLGSG---EPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIM 120
           + QPSSADF D GDLGSG   EPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIM
Sbjct: 61  IIQPSSADFADSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIM 120

Query: 121 QLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAA-----ASDLATDHLFA 180
           QLMSVDGLTRENVASHLQKYRLYLKRMQGIS GS  GGGANG A     ASD ATDHLFA
Sbjct: 121 QLMSVDGLTRENVASHLQKYRLYLKRMQGISGGS--GGGANGGAGLVSPASDPATDHLFA 180

Query: 181 SSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHH-MAAAAAAAQYHRQVAQFGS--PPNGQ 240
           SSPVPPHFLHS+R NSDHFLPFVPVGALQ HHH MAAAAAAAQYHRQVA FGS  P NGQ
Sbjct: 181 SSPVPPHFLHSARGNSDHFLPFVPVGALQHHHHQMAAAAAAAQYHRQVAHFGSSPPTNGQ 240

Query: 241 FERPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND 278
           FE  FLARP+HR+GAPVS P TN+SEDLDSGN T GRKVLTLFPTGND
Sbjct: 241 FENTFLARPVHRVGAPVSTPVTNYSEDLDSGNGTGGRKVLTLFPTGND 286

[Close]

BLAST of CmoCh14G005000 vs. ExPASy TrEMBL
Match: A0A6J1H3F6 (transcription factor MYBC1-like OS=Cucurbita moschata OX=3662 GN=LOC111459631 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.5e-126
Identity = 236/286 (82.52%), Postives = 252/286 (88.11%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNS-HPPPPPPP 60
           MRE+DSNWFSKW++ELPSP+ELMPLSQTLITPDLA+AFDI + +++I+NN+ HPPPPPPP
Sbjct: 1   MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPP 60

Query: 61  VVAQPSSADFGDCGDLGSG-----EPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPK 120
           V  QPSSADFGD GD  SG     EPARTLKRPRLVWTPQLHKRFVDAV HLGIKNAVPK
Sbjct: 61  VPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPK 120

Query: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGG--GGAN-GAAASDLATDHLF 180
           TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGIS GSGGG  GGA   +  SD ATDHLF
Sbjct: 121 TIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLF 180

Query: 181 ASSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFE 240
           ASSPVPPHFLHSSR NSDHFLPFVPVGAL QHHH  AAAAAAQYHRQVA FGSPPNGQFE
Sbjct: 181 ASSPVPPHFLHSSRANSDHFLPFVPVGAL-QHHHQMAAAAAAQYHRQVAHFGSPPNGQFE 240

Query: 241 RPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND 278
            PFLARP+HR+G PV+ PATN+SEDLDS N T GRKVLTLFPTGND
Sbjct: 241 HPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 285

[Close]

BLAST of CmoCh14G005000 vs. TAIR 10
Match: AT3G10760.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 324.3 bits (830), Expect = 9.4e-89
Identity = 197/343 (57.43%), Postives = 227/343 (66.18%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHP------- 60
           MRE+DS+WF++WEEELPSPEELMP+SQ+LI+PDLA+AFDI + N    N++ P       
Sbjct: 1   MREDDSDWFARWEEELPSPEELMPISQSLISPDLALAFDIRTPNHGNGNSNQPHHHHHHQ 60

Query: 61  -PPPPPPVVAQP-----SSADF-GDCGDLGSG-----EPARTLKRPRLVWTPQLHKRFVD 120
             PP P  +  P     SSA+F  D  DLGSG     EPARTLKRPRLVWTPQLHKRFVD
Sbjct: 61  TTPPTPSQLQLPSSQANSSAEFAADSADLGSGGAAGDEPARTLKRPRLVWTPQLHKRFVD 120

Query: 121 AVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAA 180
           AVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQG+SSG G G       
Sbjct: 121 AVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGGGAG------- 180

Query: 181 ASDLATDHLFASSPVPPHFLHSSRT-NSDHFLP-FVPVGALQQHHHMAAAAAAA------ 240
            SD ATD LFASSPVP HFLH +R  +SDHF+P FVP+  LQQ   MAAAAAAA      
Sbjct: 181 -SDPATDRLFASSPVPAHFLHPNRVPSSDHFMPSFVPIATLQQQQQMAAAAAAAAAANPH 240

Query: 241 ----QYHRQVA-------------------QFGSP---------PNGQFERPFLA----- 278
               Q+HRQ+A                   QFGSP          NG+F+  FLA     
Sbjct: 241 LQPPQFHRQIAAAHFGSPTNGGFSSPTSNGQFGSPTSNGFGSPTTNGKFDPSFLAVRQTQ 300

[Close]

BLAST of CmoCh14G005000 vs. TAIR 10
Match: AT5G05090.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 290.4 bits (742), Expect = 1.5e-78
Identity = 175/289 (60.55%), Postives = 201/289 (69.55%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPV 60
           MREEDSNWF+KWEEELPSPEEL+PLSQ+LITPDLA+AFD+  +N   ++NS  P P    
Sbjct: 1   MREEDSNWFAKWEEELPSPEELIPLSQSLITPDLAIAFDLHRNN---NSNSGQPLPQTTP 60

Query: 61  VAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM 120
               SSA+    GD    EPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM
Sbjct: 61  PQPNSSAEI--AGDSTGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLM 120

Query: 121 SVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFASSPVPPHF 180
           SVDGLTRENVASHLQKYRLYLKRM+     SGGGGG +G       +DHLFASSPVPPHF
Sbjct: 121 SVDGLTRENVASHLQKYRLYLKRMK-----SGGGGGGSG------DSDHLFASSPVPPHF 180

Query: 181 LH-SSRTNSDHFLP-FVPVGALQQHHHMAAAAAAAQYHRQVA--QFGSPPNGQFERPFLA 240
           LH +SR +SD F+P FVP+   QQH    AA  +   HRQ++   F SP     +  FLA
Sbjct: 181 LHPTSRQSSDLFIPSFVPISTQQQH---IAAPPSQFLHRQISAVNFTSPTKATDQAMFLA 240

Query: 241 RPIHRLGAPVSNPAT--------NHSEDLDSGNATEGRKVLTLFPTGND 278
           R    L  PV  P++        N+++DL SG  T    VLTLFPT +D
Sbjct: 241 RQQSELQQPVFKPSSLHLHSQVANYTQDLKSGAKT----VLTLFPTRDD 266

[Close]

BLAST of CmoCh14G005000 vs. TAIR 10
Match: AT2G40970.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.4e-60
Identity = 131/212 (61.79%), Postives = 148/212 (69.81%), Query Frame = 0


Query: 1   MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSN-------------AAI 60
           MRE++ NWF +WEEELPSPEEL+P+SQTLITP LA+AF I S N               +
Sbjct: 1   MREDNPNWFLRWEEELPSPEELIPISQTLITPHLALAFQIGSPNHHLGSKRTTAIYHQKL 60

Query: 61  DNNSHP--PPPPPPVVAQPSSADFGDCGDLGS----GEPARTLKRPRLVWTPQLHKRFVD 120
            +++ P  P P PP +   S    GD  DLGS    GEPARTLKRPRLVWTPQLHKRFVD
Sbjct: 61  QSSTTPTTPTPTPPPMMMNSDFGGGDSTDLGSGSIGGEPARTLKRPRLVWTPQLHKRFVD 120

Query: 121 AVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAA 180
           AV HLGIKNAVPKTIMQLMSV+GLTRENVASHLQKYRLYL+RMQG   G+G G       
Sbjct: 121 AVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLRRMQG---GNGNGITGGHVI 180

Query: 181 ASDLATDHLFASSPVPPHFLHSSRTNSDHFLP 194
            SD ATD LFASSPVP HFL     + D+ +P
Sbjct: 181 VSDSATDRLFASSPVPAHFL-----SPDYLMP 204

[Close]

BLAST of CmoCh14G005000 vs. TAIR 10
Match: AT3G46640.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 156.0 bits (393), Expect = 4.4e-38
Identity = 101/222 (45.50%), Postives = 121/222 (54.50%), Query Frame = 0


Query: 5   DSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDI------------------------ 64
           D +  S+WE  LPS E+L  LS +LI P+LA+AF I                        
Sbjct: 15  DGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRG 74

Query: 65  -------SSSNAAIDNNSHPPPPPPPVVAQPSSADFGDCGDLGSGEP------------- 124
                  SSSN  ++         P   ++      GD  D G  +P             
Sbjct: 75  GSSGPNTSSSNNNVEEEDRVGSSSPGSDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGT 134

Query: 125 ----ARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK 179
                +TLKRPRLVWTPQLHKRFVD VAHLGIKNAVPKTIMQLM+V+GLTRENVASHLQK
Sbjct: 135 EDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 194

[Close]

BLAST of CmoCh14G005000 vs. TAIR 10
Match: AT3G46640.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 156.0 bits (393), Expect = 4.4e-38
Identity = 101/222 (45.50%), Postives = 121/222 (54.50%), Query Frame = 0


Query: 5   DSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDI------------------------ 64
           D +  S+WE  LPS E+L  LS +LI P+LA+AF I                        
Sbjct: 15  DGDRVSEWEMGLPSDEDLASLSYSLIPPNLAMAFSITPERSRTIQDVNRASETTLSSLRG 74

Query: 65  -------SSSNAAIDNNSHPPPPPPPVVAQPSSADFGDCGDLGSGEP------------- 124
                  SSSN  ++         P   ++      GD  D G  +P             
Sbjct: 75  GSSGPNTSSSNNNVEEEDRVGSSSPGSDSKKQKTSNGDGDDGGGVDPDSAMAAEEGDSGT 134

Query: 125 ----ARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQK 179
                +TLKRPRLVWTPQLHKRFVD VAHLGIKNAVPKTIMQLM+V+GLTRENVASHLQK
Sbjct: 135 EDLSGKTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQK 194

The following BLAST results are available for this feature:

BLAST of CmoCh14G005000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22210	2.0e-59	61.79	Transcription factor MYBC1 OS=Arabidopsis thaliana OX=3702 GN=MYBC1 PE=1 SV=1	[more]
Q9SNB4	6.2e-37	45.50	Transcription factor LUX OS=Arabidopsis thaliana OX=3702 GN=LUX PE=1 SV=1	[more]
Q94DH3	3.4e-35	44.40	Transcription factor PCL1 OS=Oryza sativa subsp. japonica OX=39947 GN=PCL1 PE=2 ...	[more]
Q9LTH4	7.1e-33	39.92	Transcription factor BOA OS=Arabidopsis thaliana OX=3702 GN=BOA PE=2 SV=1	[more]
A2XE31	2.1e-21	42.35	Two-component response regulator ORR21 OS=Oryza sativa subsp. indica OX=39946 GN...	[more]

BLAST of CmoCh14G005000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F4V0	2.4e-156	100.00	transcription factor MYBC1-like OS=Cucurbita moschata OX=3662 GN=LOC111442136 PE...	[more]
A0A6J1J8N8	1.3e-151	97.83	transcription factor MYBC1-like OS=Cucurbita maxima OX=3661 GN=LOC111482343 PE=4...	[more]
A0A5A7UK93	2.3e-127	83.33	Transcription factor PCL1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B723	2.3e-127	83.33	transcription factor PCL1-like OS=Cucumis melo OX=3656 GN=LOC103486866 PE=4 SV=1	[more]
A0A6J1H3F6	1.5e-126	82.52	transcription factor MYBC1-like OS=Cucurbita moschata OX=3662 GN=LOC111459631 PE...	[more]

BLAST of CmoCh14G005000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10760.1	9.4e-89	57.43	Homeodomain-like superfamily protein	[more]
AT5G05090.1	1.5e-78	60.55	Homeodomain-like superfamily protein	[more]
AT2G40970.1	1.4e-60	61.79	Homeodomain-like superfamily protein	[more]
AT3G46640.1	4.4e-38	45.50	Homeodomain-like superfamily protein	[more]
AT3G46640.2	4.4e-38	45.50	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 90..138 e-value: 1.9E-8 score: 34.4
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 91..142 score: 11.409622
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 87..139 e-value: 2.8E-24 score: 83.2
None	No IPR available	GENE3D	1.10.10.60		coord: 83..145 e-value: 6.8E-32 score: 111.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..277
None	No IPR available	PANTHER	PTHR31442:SF31	HOMEODOMAIN-LIKE PROTEIN-RELATED	coord: 1..277
IPR044841	Transcription factor LUX/BOA-like	PANTHER	PTHR31442	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..277
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 83..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G005000.1	CmoCh14G005000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity