CmoCh14G004480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G004480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein FAR1-RELATED SEQUENCE 5
Location	Cmo_Chr14: 2151632 .. 2155665 (+)
RNA-Seq Expression	CmoCh14G004480
Synteny	CmoCh14G004480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTTCCCTCGCCTTTCTTTTACTCGCATCGTTCACCATCGTTACTCTTTTCTCGAACCTTCTTTCACAGAGCCTCGCACTACAGACGCTGCCACTCGCCTTCGTTCTTGCTTCTGCCCAATCAATTCTTCATCCTCTGATCACGGTAATAGTTTCATCTACTTGTTCTAATCGCTGTTCTTTTTTTTTTTTTTTTTTTCTTGTTTTGCCAATCCTCTGGGTTGCAGACGGAAGTTGTGATAAGATGATTGAATTGAATGCGCTTGAAAACCGTATCGTTGTTCTGGATTTCATTGTCTATTGGAGATTGAATTTTTGGTACTTGGTTGTGCCGCCATTGTCTGTTGATGATCTAACTTTGGAAATGGGATATATACATTTGACTTTTATGTCAGTTTTTCTTTGTCTGATTTAGTGATTTAGTTAATTTCTCTAGATATTGATAACTTTCAGATGGATTTGAGAGATAATAGTGAAAGATGTGTTCTGACAGTGGACGCAGATGCGGGAGAGGAAGGGATAGAGGGAGGATCATTCGAGAGTCCGGCGGGAACAGAATTGATTGAAGGTGATGGAGATATCATCCTTGAGCCTTATGAGGGCATGGAATTTGAGTCTGAAGATGCTGCCAAGATTTTCTATGATAAGTATGCCCGTCAAGTGGGATTTGTTATGCGTGTTATGTCTTGTCGTCGTTCTGAAAAAGATGGGAGGATACTTGCCCGAAGACTTGGATGCAACAAAGAAGGTTATTGTGTCAGCATCCGAGGTAAATTTGGGGCAGTTCGGAAGCCACGGCCAAGCACACGAGAAGGCTGTAAGGCAATGATTCATGTCAAATATGATAAGTTTGGGAAATGGGTGATTACTAAATTTGTAAAGGAACACAATCATCCTCTTGTGGTTTCTCCTCGTGAAGCTCGGCAGACCATGGTGCGTGTTTCTTCTCTTCCCCTACTTTTATCTTCTATCCAACATCATATATTACAATAAGACTGTCATTTGCTAGTATGCTTTCTAGTGAGGCCTAAGAATTAATAGGCTAGAATCTGCGAAGATGTTATGGAATTTGCAACAATTGGAACATGTTTTGTGGAAACATATTTTGGCTCGTTGAAACCCGGGTTTCTTTAAACAAAGCAAGCTATTTGATGGATCGTTTAGTGAATCAATTTTGTTTTTTAGAGAGATGGAATTGAAAAGATCTTTTCCTCCTATATTATGCCTTGGAAAACCACCTTTCTGATTGAATGTGGATGTGGATAAGTGGAGGACAGGATGGTTTTTGGTTGTGCATCCGTGCAGTTATGACTGGGCTCAGTGTTTTGTTGGGTTTGCTTTATATGCTCATGGTATTTGCACCATCTAGAATTATTCTGTTTTTGATATTGAAGCCATTGTTTCTTATCTAGAAAAGATAGGCAATTTGTGTATGTAGTTGAGTGTGGTATATCTTAACGTCTCAGATCGATGTTAGGAGAAATTATTTGGAGAGCCCGCCACAATATGACAAATAGTTTTGAATGGTTGGTTGTATGAGAGAGAAATTGCTAAAGAAGTAGCGATTTTTCGTGAGAGATAGGAAGACTAGTGGTTCCAGAACTTGATCAATTTTTTAGCATTAAGGATTCTTTATCATTTATAATGTTTACATTAGTTGCAATATAATTAATGGTTTGTTAAAAAAGAAAAACAAAGATGAAGTTTATATGAAGTTTATCCAAAAATTAAATGTCACCTGGCACATCAAAACTGCTATTTTCTCATTTTCCACTATTCATTATGTTACACTAAATTTCAATTTTAGCAACTCTCACTCCCCAAGCCCACCGCTAGCAGATATTGTCCTCCTTGGGTTTTCCCTCAAGGTTTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTCGTTTTCCTCCCCAACCGATGTGGGATCTTACAATCTACCCCCTTCGGAGTCCAGTGTCCTCGCTGACACTCGTTATCTTTTCTAATCGATGTAGGGTGTAATCATGATTTCAGTCAGTTGTGTTAGGAAGAAACCTGCCCTTTTAACTGACTAAAATGATATATCATTTACTTAGTTTAGCCAGCTATTGAGAACAGAAAGTCCACTTGGGCTAGGCTGCTTGGGTTTCGCAAAGCAAACGTTATATAGGTAATACTTGCTGACTTGTATGGATGAATTAAGGGGGAAAAATCCTGAAAGGAAGCAGAACTCATGCAGGCTAATTGCTTATAAGTAATCAATATTTACTCAATATGGCTCTATGGCCCTTGGCTTCTAGCAACACGATGTCTCCAAACAATTTATGTGACATGCCTGGCTAATTTTTGTTATGAAATTCTTTAGGATGACGTGTCTTTCTTGCTTCTATATCATGGAACAGATTACAATGGCAGAATCTCCTTGACCCTGCCATCCCTCCTGAGCCACCTTCTTCGCCATTTTCGAACTTCCTACATCTCATCTCTGTATCCTCTTTTGTTCCAGCAATTTGGGGTACAGTAACCAGATAGCTATAAACCCAGAACATGGTAACCAGATGACAAATCAATAGAACTATCACTCAGAGTTTACCGGTGACAAAACCCCATTAGTGATGGCTAGGAAAAGTAAAAACTTTTCTTGTTTACTAAATCGAGCTTCCCAGGCATGTCCGTCCCTTCTCAACTATCCCCCCACTCTCTATCACTAGGAAAAGTAAAACATTTTGAGTACATGCTAGAGCTTCCCGGGCATGCCACCCCTTTTCAACCAATAACTCATTCCTTCCAACGCCTTGCCCGTTAGTTTTCTAGCCTTCTTGTTGTATAGGTGAATTGAATTGATCTTTTGTATATCCTAACATGTTTTGGTGCTTTCAGTTATGATGCCTAACGTGATATGGTCTCACCTGATCCAATTATCAATTGAAACAATTGAAATGTTTGGAATTTTCGCTCTAACTAAACGGTTGGAACCATTTGGAACACCCACCTAGCATACTTTGTTACTCATGAATAGTATACTATACTAGTTTATCCCTAGTTCGGGGAACTAGTAAACTTCCAAGAGATTGGGGGCTTTTTAACAAAAGATAACTTGAATTGAGAAGATACTAGAATTATTTGTCTGTTGATAGCTAAATCTTTTTTTTTAGGTGGTTGACATGTATTTATATTTGTTATATCGTGATTAAAAACCATTGATTTTGGACTTCCCTTATAGGATGAAAAGGATAAACAAATACAGGAACTCACTATAGAGCTGCGGAATAAGAAACGGTTATGCTCCACATACCAAGAACAGCTTGCTGCATTTATGAAAATTGTTGAAGAGCATACCGACCAATTATCCAGAAAAGTTCAAAATGTAGTTACCAACCTCAAAGAGTTTGAGTCCATTGAGCAAGAACTATTGCATCCTAGATAGCCTAGCCACTGAGTGAGTATCTGATTGTTGACTTGACTCTTCTCTTTCACTTTTGAGTTTGTTTTTTTTAACTGCATCAAAAGTATTTCTTATGCCATGTTCAACTAGATTCTTATGCAGTGCGGTCGGTGGCCATCGAGATTTTGAGGTTGGCAGTGCACGAAGAAGTACGACAACCCAAAAAGGCATTCTTTGCAATATAACCCGCCCCACTCTAAACTTGGAGCGAGCTACAGAAATGAACATTGCAATATTTCCTCTGTTGTGTATCATAGCAGCACTGGCATGAAGTAGAAGCACTTCCAGATATCTGAGCGGAGAGACTATTTTTTGAATGAAGAGTTAGATTTTATTCACCTCTATAAATGGATTTTATTGATCAACCAACGCAATTTTTCAGAAAATTTGCTGCAATTTCCATTGCTTGTGTATACTTTTGCATCTGATACTACCACTGAACCATCCAAATCCCATCCTGGATGCCCACCATTTGCTATGGTGAGAAAAAGCAAGAATAAAATTGTTCCATTTTGCTTATTTTATTAGGATTTCTCTCATGGTACTTGGGATTTAATATTCTACGAGCATCTTTGGCAACTCAT

mRNA sequence

TTCATTTCCCTCGCCTTTCTTTTACTCGCATCGTTCACCATCGTTACTCTTTTCTCGAACCTTCTTTCACAGAGCCTCGCACTACAGACGCTGCCACTCGCCTTCGTTCTTGCTTCTGCCCAATCAATTCTTCATCCTCTGATCACGATGGATTTGAGAGATAATAGTGAAAGATGTGTTCTGACAGTGGACGCAGATGCGGGAGAGGAAGGGATAGAGGGAGGATCATTCGAGAGTCCGGCGGGAACAGAATTGATTGAAGGTGATGGAGATATCATCCTTGAGCCTTATGAGGGCATGGAATTTGAGTCTGAAGATGCTGCCAAGATTTTCTATGATAAGTATGCCCGTCAAGTGGGATTTGTTATGCGTGTTATGTCTTGTCGTCGTTCTGAAAAAGATGGGAGGATACTTGCCCGAAGACTTGGATGCAACAAAGAAGGTTATTGTGTCAGCATCCGAGGTAAATTTGGGGCAGTTCGGAAGCCACGGCCAAGCACACGAGAAGGCTGTAAGGCAATGATTCATGTCAAATATGATAAGTTTGGGAAATGGGTGATTACTAAATTTGTAAAGGAACACAATCATCCTCTTGTGGTTTCTCCTCGTGAAGCTCGGCAGACCATGGATGACGTGTCTTTCTTGCTTCTATATCATGGAACAGATTACAATGGCAGAATCTCCTTGACCCTGCCATCCCTCCTGAGCCACCTTCTTCGCCATTTTCGAACTTCCTACATCTCATCTCTGTATCCTCTTTTGTTCCAGCAATTTGGGGATGAAAAGGATAAACAAATACAGGAACTCACTATAGAGCTGCGGAATAAGAAACGGTTATGCTCCACATACCAAGAACAGCTTGCTGCATTTATGAAAATTGTTGAAGAGCATACCGACCAATTATCCAGAAAAGTTCAAAATGTAGTTACCAACCTCAAAGAGTTTGAGTCCATTGAGCAAGAACTATTGCATCCTAGATAGCCTAGCCACTGAATTCTTATGCAGTGCGGTCGGTGGCCATCGAGATTTTGAGGTTGGCAGTGCACGAAGAAGTACGACAACCCAAAAAGGCATTCTTTGCAATATAACCCGCCCCACTCTAAACTTGGAGCGAGCTACAGAAATGAACATTGCAATATTTCCTCTGTTGTGTATCATAGCAGCACTGGCATGAAGTAGAAGCACTTCCAGATATCTGAGCGGAGAGACTATTTTTTGAATGAAGAGTTAGATTTTATTCACCTCTATAAATGGATTTTATTGATCAACCAACGCAATTTTTCAGAAAATTTGCTGCAATTTCCATTGCTTGTGTATACTTTTGCATCTGATACTACCACTGAACCATCCAAATCCCATCCTGGATGCCCACCATTTGCTATGGTGAGAAAAAGCAAGAATAAAATTGTTCCATTTTGCTTATTTTATTAGGATTTCTCTCATGGTACTTGGGATTTAATATTCTACGAGCATCTTTGGCAACTCAT

Coding sequence (CDS)

ATGGATTTGAGAGATAATAGTGAAAGATGTGTTCTGACAGTGGACGCAGATGCGGGAGAGGAAGGGATAGAGGGAGGATCATTCGAGAGTCCGGCGGGAACAGAATTGATTGAAGGTGATGGAGATATCATCCTTGAGCCTTATGAGGGCATGGAATTTGAGTCTGAAGATGCTGCCAAGATTTTCTATGATAAGTATGCCCGTCAAGTGGGATTTGTTATGCGTGTTATGTCTTGTCGTCGTTCTGAAAAAGATGGGAGGATACTTGCCCGAAGACTTGGATGCAACAAAGAAGGTTATTGTGTCAGCATCCGAGGTAAATTTGGGGCAGTTCGGAAGCCACGGCCAAGCACACGAGAAGGCTGTAAGGCAATGATTCATGTCAAATATGATAAGTTTGGGAAATGGGTGATTACTAAATTTGTAAAGGAACACAATCATCCTCTTGTGGTTTCTCCTCGTGAAGCTCGGCAGACCATGGATGACGTGTCTTTCTTGCTTCTATATCATGGAACAGATTACAATGGCAGAATCTCCTTGACCCTGCCATCCCTCCTGAGCCACCTTCTTCGCCATTTTCGAACTTCCTACATCTCATCTCTGTATCCTCTTTTGTTCCAGCAATTTGGGGATGAAAAGGATAAACAAATACAGGAACTCACTATAGAGCTGCGGAATAAGAAACGGTTATGCTCCACATACCAAGAACAGCTTGCTGCATTTATGAAAATTGTTGAAGAGCATACCGACCAATTATCCAGAAAAGTTCAAAATGTAGTTACCAACCTCAAAGAGTTTGAGTCCATTGAGCAAGAACTATTGCATCCTAGATAG

Protein sequence

MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTMDDVSFLLLYHGTDYNGRISLTLPSLLSHLLRHFRTSYISSLYPLLFQQFGDEKDKQIQELTIELRNKKRLCSTYQEQLAAFMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR

Homology

[Close]

BLAST of CmoCh14G004480 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-25
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 0


Query: 45  LEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGY--CV 104
           LEPY+G+EFESE+AAK FY+ YAR++GF  RV S RRS +DG I+ R+  C KEG+    
Sbjct: 71  LEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMN 130

Query: 105 SIRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPLV 151
             R K   +++PR  TR GCKA + VK    GKW+++ FVK+HNH LV
Sbjct: 131 EKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELV 178

HSP 2 Score: 40.8 bits (94), Expect = 2.9e-02
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 191 RHFRTSYIS----SLYPLLFQQFGDEKDKQIQELTIELRNKKRLCSTYQEQLAAFMKIVE 250
           RHF+ S ++        L   +  DE DK+I +L  EL    R C  Y+  L + +K +E
Sbjct: 708 RHFKASSVTGGKHQQEVLAQPEPEDEMDKKINQLRNELELANRKCEAYRTNLLSVLKEME 767

Query: 251 EHTDQLSRKVQNVVTNLKE 266
           +   Q+S KVQN+  +LK+
Sbjct: 768 DQKLQVSIKVQNIKISLKD 786

[Close]

BLAST of CmoCh14G004480 vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-16
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 36  LIEGDGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGC 95
           + E +GD  LEPY G+EF++ + A+ +Y+ YA + GF +R     RS  DG + +RR  C
Sbjct: 17  IAENEGDSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVC 76

Query: 96  NKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPRE 155
           +KEG+              + ++R GC A I V+    GKWV+ +  KEHNH L     E
Sbjct: 77  SKEGF--------------QLNSRTGCPAFIRVQRRDTGKWVLDQIQKEHNHDLGGHIEE 126

Query: 156 ARQT 160
           A+ T
Sbjct: 137 AQTT 126

[Close]

BLAST of CmoCh14G004480 vs. ExPASy Swiss-Prot
Match: Q3EBQ3 (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.1e-16
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 44  ILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVS 103
           + E   GM+FES++AA  FY +YAR VGF + + + RRS++ G+ +  ++ C++ G   +
Sbjct: 35  VSELRNGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFG---T 94

Query: 104 IRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPL 150
            R K  A+  PR   + GCKA +H+K  +  KWVI  FVKEHNH +
Sbjct: 95  KREKATAI-NPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEI 136

[Close]

BLAST of CmoCh14G004480 vs. ExPASy Swiss-Prot
Match: Q9SWG3 (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-15
Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = 0


Query: 1   MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTEL-------IEGD----GDIILEPYE 60
           MDL++N       + +DAG++ +     E  +  ++       I GD    GD+ LEP  
Sbjct: 1   MDLQEN-------LVSDAGDDHMVDIVVEPHSNRDIGIVDEFNIGGDVGFSGDLDLEPRN 60

Query: 61  GMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFG 120
           G++F++ +AA IFY +YA+ +GF   + + RRS+K    +  +  C++ G         G
Sbjct: 61  GIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESS-G 120

Query: 121 AVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPLV 151
           +  +     +  CKA +HVK    GKW+I +FVK+HNH L+
Sbjct: 121 SSSRRSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELL 153

[Close]

BLAST of CmoCh14G004480 vs. ExPASy Swiss-Prot
Match: Q9LIE5 (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana OX=3702 GN=FHY3 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-14
Identity = 51/141 (36.17%), Postives = 68/141 (48.23%), Query Frame = 0


Query: 31  PAGTELIEGDGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILA 90
           P G EL+E    + LEP  GMEFES   A  FY +Y+R +GF   + + RRS+     + 
Sbjct: 55  PTG-ELVEYTEGMNLEPLNGMEFESHGEAYSFYQEYSRAMGFNTAIQNSRRSKTTREFID 114

Query: 91  RRLGCNKEG----YCVSIRGKFGAVRKPRPSTREG--------CKAMIHVKYDKFGKWVI 150
            +  C++ G    Y  S         K  P    G        CKA +HVK    GKWVI
Sbjct: 115 AKFACSRYGTKREYDKSFNRPRARQSKQDPENMAGRRTCAKTDCKASMHVKRRPDGKWVI 174

Query: 151 TKFVKEHNHPLVVSPREARQT 160
             FV+EHNH L+ +   + QT
Sbjct: 175 HSFVREHNHELLPAQAVSEQT 194

[Close]

BLAST of CmoCh14G004480 vs. ExPASy TrEMBL
Match: A0A6J1F5F7 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442478 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 4.4e-118
Identity = 227/277 (81.95%), Postives = 227/277 (81.95%), Query Frame = 0


Query: 1   MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 60
           MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK
Sbjct: 1   MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 60

Query: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120
           IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE
Sbjct: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120

Query: 121 GCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTMDDVSFLLLYHGTDYNGRISL 180
           GCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTM                    
Sbjct: 121 GCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTM-------------------- 180

Query: 181 TLPSLLSHLLRHFRTSYISSLYPLLFQQFGDEKDKQIQELTIELRNKKRLCSTYQEQLAA 240
                                         DEKDKQIQELTIELRNKKRLCSTYQEQLAA
Sbjct: 181 ------------------------------DEKDKQIQELTIELRNKKRLCSTYQEQLAA 227

Query: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 278
           FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR
Sbjct: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 227

[Close]

BLAST of CmoCh14G004480 vs. ExPASy TrEMBL
Match: A0A6J1J157 (protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481745 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 4.1e-116
Identity = 225/277 (81.23%), Postives = 225/277 (81.23%), Query Frame = 0


Query: 1   MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 60
           MDLRDNSERCVLTVDADA EEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK
Sbjct: 6   MDLRDNSERCVLTVDADAVEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 65

Query: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120
           IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE
Sbjct: 66  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 125

Query: 121 GCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTMDDVSFLLLYHGTDYNGRISL 180
           GCKAMIHVKYDK GKWVITKFVKEHNHPLVVSPREARQTM                    
Sbjct: 126 GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTM-------------------- 185

Query: 181 TLPSLLSHLLRHFRTSYISSLYPLLFQQFGDEKDKQIQELTIELRNKKRLCSTYQEQLAA 240
                                         DEKDKQIQELTIELRNKKRLCSTYQEQLAA
Sbjct: 186 ------------------------------DEKDKQIQELTIELRNKKRLCSTYQEQLAA 232

Query: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 278
           FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR
Sbjct: 246 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 232

[Close]

BLAST of CmoCh14G004480 vs. ExPASy TrEMBL
Match: A0A6J1IYB6 (protein FAR1-RELATED SEQUENCE 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481745 PE=4 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 4.1e-116
Identity = 225/277 (81.23%), Postives = 225/277 (81.23%), Query Frame = 0


Query: 1   MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 60
           MDLRDNSERCVLTVDADA EEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK
Sbjct: 1   MDLRDNSERCVLTVDADAVEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 60

Query: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120
           IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE
Sbjct: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120

Query: 121 GCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTMDDVSFLLLYHGTDYNGRISL 180
           GCKAMIHVKYDK GKWVITKFVKEHNHPLVVSPREARQTM                    
Sbjct: 121 GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTM-------------------- 180

Query: 181 TLPSLLSHLLRHFRTSYISSLYPLLFQQFGDEKDKQIQELTIELRNKKRLCSTYQEQLAA 240
                                         DEKDKQIQELTIELRNKKRLCSTYQEQLAA
Sbjct: 181 ------------------------------DEKDKQIQELTIELRNKKRLCSTYQEQLAA 227

Query: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 278
           FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR
Sbjct: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 227

[Close]

BLAST of CmoCh14G004480 vs. ExPASy TrEMBL
Match: A0A6J1DLA3 (protein FAR1-RELATED SEQUENCE 5 OS=Momordica charantia OX=3673 GN=LOC111021572 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 222/277 (80.14%), Postives = 223/277 (80.51%), Query Frame = 0


Query: 1   MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 60
           MDLRDNSERC+LTVDAD GEEGIEGGSFESPAGTELIE DGDIILEPYEGMEFESED AK
Sbjct: 1   MDLRDNSERCLLTVDADEGEEGIEGGSFESPAGTELIECDGDIILEPYEGMEFESEDDAK 60

Query: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120
           IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE
Sbjct: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120

Query: 121 GCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTMDDVSFLLLYHGTDYNGRISL 180
           GCKAMIHVKYDK GKWVITKFVKEHNHPLVVSPREARQTM                    
Sbjct: 121 GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSPREARQTM-------------------- 180

Query: 181 TLPSLLSHLLRHFRTSYISSLYPLLFQQFGDEKDKQIQELTIELRNKKRLCSTYQEQLAA 240
                                         DEKDKQIQELTIELRNKKRLCSTYQEQLAA
Sbjct: 181 ------------------------------DEKDKQIQELTIELRNKKRLCSTYQEQLAA 227

Query: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 278
           FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR
Sbjct: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 227

[Close]

BLAST of CmoCh14G004480 vs. ExPASy TrEMBL
Match: A0A1S3B7B4 (protein FAR1-RELATED SEQUENCE 5 OS=Cucumis melo OX=3656 GN=LOC103486797 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 9.8e-110
Identity = 215/277 (77.62%), Postives = 219/277 (79.06%), Query Frame = 0


Query: 1   MDLRDNSERCVLTVDADAGEEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAK 60
           MDLRDNSERC+L VDAD GEEGIEGGS ESPAGTEL + DGDIILEPYEGMEFESEDAAK
Sbjct: 1   MDLRDNSERCLLAVDADEGEEGIEGGSLESPAGTELNDCDGDIILEPYEGMEFESEDAAK 60

Query: 61  IFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTRE 120
           IFYDKYARQ+GFVMRVMSCRRSEKDGRILARRLGCNKEG+CVSIRGKFGAVRKPRPSTRE
Sbjct: 61  IFYDKYARQLGFVMRVMSCRRSEKDGRILARRLGCNKEGHCVSIRGKFGAVRKPRPSTRE 120

Query: 121 GCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTMDDVSFLLLYHGTDYNGRISL 180
           GCKAMIHVKYDK GKWVITKFVKEHNHPLVVS REARQTM                    
Sbjct: 121 GCKAMIHVKYDKSGKWVITKFVKEHNHPLVVSAREARQTM-------------------- 180

Query: 181 TLPSLLSHLLRHFRTSYISSLYPLLFQQFGDEKDKQIQELTIELRNKKRLCSTYQEQLAA 240
                                         DEKDKQIQELTIELRNKKRLCSTYQEQLAA
Sbjct: 181 ------------------------------DEKDKQIQELTIELRNKKRLCSTYQEQLAA 227

Query: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 278
           FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLH R
Sbjct: 241 FMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHLR 227

[Close]

BLAST of CmoCh14G004480 vs. TAIR 10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 288.1 bits (736), Expect = 7.4e-78
Identity = 148/236 (62.71%), Postives = 169/236 (71.61%), Query Frame = 0


Query: 42  DIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEGYC 101
           D  +EP EG+ FESEDAAK+FYD Y+R++GFVMRVMSCRRSEKDGRILARR GCNKEG+C
Sbjct: 17  DFAIEPREGIIFESEDAAKMFYDDYSRRLGFVMRVMSCRRSEKDGRILARRFGCNKEGHC 76

Query: 102 VSIRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQTMD 161
           VSIRGKFG+VRKPRPSTREGCKAMIHVKYD+ GKWVITKFVKEHNHPLVVSPREAR T+ 
Sbjct: 77  VSIRGKFGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLVVSPREARHTL- 136

Query: 162 DVSFLLLYHGTDYNGRISLTLPSLLSHLLRHFRTSYISSLYPLLFQQFGDEKDKQIQELT 221
                                                            DEKDK+IQELT
Sbjct: 137 -------------------------------------------------DEKDKRIQELT 196

Query: 222 IELRNKKRLCSTYQEQLAAFMKIVEEHTDQLSRKVQNVVTNLKEFESIEQELLHPR 278
           IELRNKKRLC+ Y+EQL AF KIVEEH++Q+++KV+NVV NLKEFE +E  LL  +
Sbjct: 197 IELRNKKRLCAAYKEQLDAFAKIVEEHSNQIAKKVENVVNNLKEFEHLEHALLRSK 202

[Close]

BLAST of CmoCh14G004480 vs. TAIR 10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 156.0 bits (393), Expect = 4.4e-38
Identity = 98/250 (39.20%), Postives = 140/250 (56.00%), Query Frame = 0


Query: 20  EEGIEGGSFESPAGTELIEGDGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSC 79
           EE +E    E+    + +  +   ++EP+ GMEFESE+AAK FYD YA  +GFVMRV + 
Sbjct: 8   EEDVE--MMENSDVMKTVTDEASPMVEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAF 67

Query: 80  RRSEKDGRILARRLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVIT 139
           RRS +DG ++ RRL CNKEG+  S R +    RKPR  TREGCKA+I VK +K G W++T
Sbjct: 68  RRSMRDGTVVWRRLVCNKEGFRRS-RPRRSESRKPRAITREGCKALIVVKREKSGTWLVT 127

Query: 140 KFVKEHNHPLV-VSPREARQTMDDVSFLLLYHGTDYNGRISLTLPSLLSHLLRHFRTSYI 199
           KF KEHNHPL+ +SP                     N R +  LP               
Sbjct: 128 KFEKEHNHPLLPLSP---------------------NVRRNFQLP--------------- 187

Query: 200 SSLYPLLFQQFGDEKDKQIQELTIELRNKKRLCSTYQEQLAAFMKIVEEHTDQLSRKVQN 259
                    Q  DEKD +I+EL+ EL  ++R C+  Q+QL   +K +EEH++ L+  + +
Sbjct: 188 ---------QTPDEKDAKIRELSAELSRERRRCTALQQQLDMVLKEMEEHSNHLTININS 209

Query: 260 VVTNLKEFES 269
           V+ ++++ ES
Sbjct: 248 VIQSVRDIES 209

[Close]

BLAST of CmoCh14G004480 vs. TAIR 10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 142.1 bits (357), Expect = 6.6e-34
Identity = 87/228 (38.16%), Postives = 129/228 (56.58%), Query Frame = 0


Query: 41  GDIIL-EPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILARRLGCNKEG 100
           GD+ L EPY G++FESE+ AK FY +Y++++GFV+R+M  RRS  DGR LARRLGCNK+G
Sbjct: 3   GDLKLDEPYVGLKFESEEEAKDFYVEYSKRLGFVVRMMQRRRSGIDGRTLARRLGCNKQG 62

Query: 101 YCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPLVVSPREARQT 160
           +  + +    +      S+REGCKA I VK +K GKWV+T+F+KEHNH L          
Sbjct: 63  FGPNNQRSSSS----SSSSREGCKATILVKMEKSGKWVVTRFIKEHNHSL---------- 122

Query: 161 MDDVSFLLLYHGTDYNGRISLTLPSLLSHLLRHFRTSYISSLYPLLFQQFGDEKDKQIQE 220
                                                +I S     +  F D K+++I+E
Sbjct: 123 ------------------------------------QFIGS---SSYDSFAD-KERKIKE 176

Query: 221 LTIELRNKKRLCSTYQEQLAAFMKIVEEHTDQLSRKVQNVVTNLKEFE 268
           LT E+  + RLC  Y+++L +F+  VE +T++LS KV+++V N+K+ E
Sbjct: 183 LTEEIECQDRLCDVYRDRLVSFIDNVEHYTEELSLKVRDIVENVKKLE 176

[Close]

BLAST of CmoCh14G004480 vs. TAIR 10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 135.2 bits (339), Expect = 8.1e-32
Identity = 87/244 (35.66%), Postives = 123/244 (50.41%), Query Frame = 0


Query: 32  AGTELIEGDGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILAR 91
           A  ++ E  GD   EPY G EFESE AA  FY+ YA +VGFV+RV    RS  DG  + R
Sbjct: 58  AVADMTEAQGD---EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGR 117

Query: 92  RLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPLVV 151
           +L CNKEGY   +  K   V + R  TR GCKAMI ++ +  GKWVITKFVKEHNH L+ 
Sbjct: 118 QLVCNKEGY--RLPSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLM- 177

Query: 152 SPREARQTMDDVSFLLLYHGTDYNGRISLTLPSLLSHLLRHFRTSYISSLYPLLFQQFGD 211
            P   R+                                              ++ Q+ +
Sbjct: 178 -PGRVRR--------------------------------------------GCIYDQYPN 237

Query: 212 EKDKQIQELTIELRNKKRLCSTYQEQLAAFMKIVEEHTDQLSRKVQNVVTNLKEFESIEQ 271
           E DK IQEL  +L  +K+  +TY+  L    + +E+H + LS+++Q++V N++  E  + 
Sbjct: 238 EHDK-IQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKRIQHIVDNVRNLEQRDH 249

Query: 272 ELLH 276
           +  H
Sbjct: 298 QQNH 249

[Close]

BLAST of CmoCh14G004480 vs. TAIR 10
Match: AT3G59470.2 (Far-red impaired responsive (FAR1) family protein )

HSP 1 Score: 135.2 bits (339), Expect = 8.1e-32
Identity = 87/244 (35.66%), Postives = 123/244 (50.41%), Query Frame = 0


Query: 32  AGTELIEGDGDIILEPYEGMEFESEDAAKIFYDKYARQVGFVMRVMSCRRSEKDGRILAR 91
           A  ++ E  GD   EPY G EFESE AA  FY+ YA +VGFV+RV    RS  DG  + R
Sbjct: 58  AVADMTEAQGD---EPYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGR 117

Query: 92  RLGCNKEGYCVSIRGKFGAVRKPRPSTREGCKAMIHVKYDKFGKWVITKFVKEHNHPLVV 151
           +L CNKEGY   +  K   V + R  TR GCKAMI ++ +  GKWVITKFVKEHNH L+ 
Sbjct: 118 QLVCNKEGY--RLPSKRDKVIRQRAETRVGCKAMILIRKENSGKWVITKFVKEHNHSLM- 177

Query: 152 SPREARQTMDDVSFLLLYHGTDYNGRISLTLPSLLSHLLRHFRTSYISSLYPLLFQQFGD 211
            P   R+                                              ++ Q+ +
Sbjct: 178 -PGRVRR--------------------------------------------GCIYDQYPN 237

Query: 212 EKDKQIQELTIELRNKKRLCSTYQEQLAAFMKIVEEHTDQLSRKVQNVVTNLKEFESIEQ 271
           E DK IQEL  +L  +K+  +TY+  L    + +E+H + LS+++Q++V N++  E  + 
Sbjct: 238 EHDK-IQELMQQLAAEKKRAATYKRHLEMLFEQIEQHNESLSKRIQHIVDNVRNLEQRDH 249

Query: 272 ELLH 276
           +  H
Sbjct: 298 QQNH 249

The following BLAST results are available for this feature:

BLAST of CmoCh14G004480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL8	1.1e-25	52.78	Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=...	[more]
Q9M8J3	2.1e-16	37.10	Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=...	[more]
Q3EBQ3	6.1e-16	41.51	Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=...	[more]
Q9SWG3	3.9e-15	31.68	Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1...	[more]
Q9LIE5	1.5e-14	36.17	Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana OX=3702 GN=FHY3 PE...	[more]

BLAST of CmoCh14G004480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5F7	4.4e-118	81.95	protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J157	4.1e-116	81.23	protein FAR1-RELATED SEQUENCE 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IYB6	4.1e-116	81.23	protein FAR1-RELATED SEQUENCE 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DLA3	1.7e-114	80.14	protein FAR1-RELATED SEQUENCE 5 OS=Momordica charantia OX=3673 GN=LOC111021572 P...	[more]
A0A1S3B7B4	9.8e-110	77.62	protein FAR1-RELATED SEQUENCE 5 OS=Cucumis melo OX=3656 GN=LOC103486797 PE=4 SV=...	[more]

BLAST of CmoCh14G004480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43280.1	7.4e-78	62.71	Far-red impaired responsive (FAR1) family protein	[more]
AT3G07500.1	4.4e-38	39.20	Far-red impaired responsive (FAR1) family protein	[more]
AT4G12850.1	6.6e-34	38.16	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.1	8.1e-32	35.66	Far-red impaired responsive (FAR1) family protein	[more]
AT3G59470.2	8.1e-32	35.66	Far-red impaired responsive (FAR1) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 217..237
None	No IPR available	PANTHER	PTHR46328:SF17	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN	coord: 206..276
None	No IPR available	PANTHER	PTHR46328	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	coord: 29..161
None	No IPR available	PANTHER	PTHR46328	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED	coord: 206..276
None	No IPR available	PANTHER	PTHR46328:SF17	FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN	coord: 29..161
IPR004330	FAR1 DNA binding domain	PFAM	PF03101	FAR1	coord: 62..150 e-value: 2.5E-28 score: 98.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G004480.1	CmoCh14G004480.1	mRNA