CmoCh14G004450 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G004450
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Pentatricopeptide repeat superfamily protein
Location	Cmo_Chr14: 2122346 .. 2123585 (-)
RNA-Seq Expression	CmoCh14G004450
Synteny	CmoCh14G004450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTGTTGTTGATTAAATTGGGCATAATAGTGGGTCTGAAGCTTCTAGAGATAGAGCCTGAAAATGCAGGGTAACTATACGATTCTTTCAAATTGATATGCGTCTGCAGAAAAATGGGTAGAGCTTGATCAAATTGCCCATACTTTCCATGCAAGTGATCACACTCATCCAAGAAGGGTGGAGGTGGCAAAGAAGGTAAAGGAATTATCCATTAAATTCAAGGAAGACGGTTATGTTCCTTGTTTGAGCTGTGTTTTGTATGATGTGCACGAGGAACGGAGAGAGAAGGTGCTTCTAGGCCATAGTGAAAAGCTAGCTTTGGCGTTTGGGTTGATTGCTACTCCTGAAGGAGCAACAATTCATCTCATAAAAAGCCTCCGAGTTTGCGTCGACGGTAATAAACCCACGGCTAGTAGATATTGTCCTTGATGAGTTTGCACTTTTGGGCTTCCCCTCAAGGTTTTAAAACGCGTCTGCTAGGGAGAGGTTTTCACACCCTTATAAAAAATTCTTCGTTCTCCTCCCCAACTGATGTAGGATCTCACAATCCATACCCCTTCGGGCCCCAGCGTTCTCGCTGACACTCGTTCTCTTCTCCGATCGATGTGGGTTCCTCCAATCCACCCCCTTACGGGGCCTAGCGTCTTTCCTGGTACATAGCCTCGTGTCCACCCTCCTTCAGGGCTCAGTCTCCTCACTGATACATCACCCGATGTCTGGCTCTGATACCATTTGTCTAGCCCAAGCCCACCACTAGTAGATATTGTCCTCTCTAAGCTTTTCCTTTCGGACTTTTTCTCAAGATTTTAAAACACTTTTGTTAAGGAGAGGTTTCCACGCCCTTATAAAGAATTGTCCGTTCTTCTCTCCAACCGACGTGGGATCTCACACTTTAAAGTTAGTAATCCTATGGGACAAAAACCGGTTTCATAATATAGTTGGGGGAGTATGCTCTTGTGGAGATTACTGGTAAGCTTGAGTTCTCTTATCCTCTGCTACCATTAGTCTAAAAGTTTTTGATACATGAACTGAAGTAGCATGTGATTCAAAGAAGGTTAAGAACAGTTCTCTGAAATATTGATATGAAAACTGAAAATCTTTGACCTGCCAGATTCTTCTGATCCTATTGAGTTTGGCATCAGAGCAGCTGCTGCAATATTAAGAACATCAGCATTTCTTGTCGGCTTGGAGTCGAAACCAGTCAGGGTATCTGCTGCTGCCTGCTGGTGGTGGTGA

mRNA sequence

ATGGTTGTGTTGTTGATTAAATTGGGCATAATAGTGGGTCTGAAGCTTCTAGAGATAGAGCCTGAAAATGCAGGGGTGGAGGTGGCAAAGAAGGTAAAGGAATTATCCATTAAATTCAAGGAAGACGGTTATGTTCCTTGTTTGAGCTGTGTTTTGTATGATGTGCACGAGGAACGGAGAGAGAAGGTGCTTCTAGGCCATAGTGAAAAGCTAGCTTTGGCGTTTGGGTTGATTGCTACTCCTGAAGGAGCAACAATTCATCTCATAAAAAGCCTCCGAGTTTGCGTCGACGATTCTTCTGATCCTATTGAGTTTGGCATCAGAGCAGCTGCTGCAATATTAAGAACATCAGCATTTCTTGTCGGCTTGGAGTCGAAACCAGTCAGGGTATCTGCTGCTGCCTGCTGGTGGTGGTGA

Coding sequence (CDS)

ATGGTTGTGTTGTTGATTAAATTGGGCATAATAGTGGGTCTGAAGCTTCTAGAGATAGAGCCTGAAAATGCAGGGGTGGAGGTGGCAAAGAAGGTAAAGGAATTATCCATTAAATTCAAGGAAGACGGTTATGTTCCTTGTTTGAGCTGTGTTTTGTATGATGTGCACGAGGAACGGAGAGAGAAGGTGCTTCTAGGCCATAGTGAAAAGCTAGCTTTGGCGTTTGGGTTGATTGCTACTCCTGAAGGAGCAACAATTCATCTCATAAAAAGCCTCCGAGTTTGCGTCGACGATTCTTCTGATCCTATTGAGTTTGGCATCAGAGCAGCTGCTGCAATATTAAGAACATCAGCATTTCTTGTCGGCTTGGAGTCGAAACCAGTCAGGGTATCTGCTGCTGCCTGCTGGTGGTGGTGA

Protein sequence

MVVLLIKLGIIVGLKLLEIEPENAGVEVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIKSLRVCVDDSSDPIEFGIRAAAAILRTSAFLVGLESKPVRVSAAACWWW

Homology

[Close]

BLAST of CmoCh14G004450 vs. ExPASy Swiss-Prot
Match: Q9LIC3 (Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H85 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 27  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATI 86
           EV  K+KE+SIK K+ GYVP LSCVLYDV EE++EK+LLGHSEKLAL FGLIAT EG  I
Sbjct: 520 EVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPI 579

Query: 87  HLIKSLRVCVD 98
            + K+LR+CVD
Sbjct: 580 RVFKNLRICVD 590

[Close]

BLAST of CmoCh14G004450 vs. ExPASy Swiss-Prot
Match: O23169 (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H5 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 35/71 (49.30%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 27  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATI 86
           ++ + ++EL  K KE+GYVP  S VL+DV +E++E+ L+ HSEKLA+AF +++T EG  I
Sbjct: 583 QIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAI 642

Query: 87  HLIKSLRVCVD 98
            + K+LR CVD
Sbjct: 643 KVFKNLRSCVD 653

[Close]

BLAST of CmoCh14G004450 vs. ExPASy Swiss-Prot
Match: Q9ZUW3 (Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H60 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 27  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATI 86
           ++  K+++LS + K+ GY P  S VL D+ +E +E VL  HSE+LA+AFGLIATP+G+ +
Sbjct: 759 QIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPL 818

Query: 87  HLIKSLRVCVD 98
            +IK+LRVC D
Sbjct: 819 LIIKNLRVCGD 829

[Close]

BLAST of CmoCh14G004450 vs. ExPASy Swiss-Prot
Match: Q9M4P3 (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DYW10 PE=2 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 28  VAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIH 87
           + KK+KEL  K K  GY P L   L++V EE++EK+LL HSEKLA+AFG I  P+G+ I 
Sbjct: 549 IHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQ 608

Query: 88  LIKSLRVCVD 98
           + K+LR+C D
Sbjct: 609 VFKNLRICGD 618

[Close]

BLAST of CmoCh14G004450 vs. ExPASy Swiss-Prot
Match: P0C7R1 (Pentatricopeptide repeat-containing protein DWY1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DYW1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.3e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 31  KVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIK 90
           K+K L  + ++ GYVP    VL+D+ EE +EK L+ HSE+LA+AFG+I TP G TI ++K
Sbjct: 135 KLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMK 194

Query: 91  SLRVCVD 98
           +LR+C D
Sbjct: 195 NLRICGD 201

[Close]

BLAST of CmoCh14G004450 vs. ExPASy TrEMBL
Match: A0A5A7TNQ9 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005710 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 77/150 (51.33%), Postives = 86/150 (57.33%), Query Frame = 0


Query: 6   IKLGIIVGLKLLEIEPENAG---------------------------------------- 65
           +++GIIVG KLLE+EPENAG                                        
Sbjct: 451 VEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVE 510

Query: 66  ------------------VEVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGH 98
                              EVAKKVKELSIKFKEDGYVP LSCVLYDV EE++EKVLLGH
Sbjct: 511 LDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGH 570

[Close]

BLAST of CmoCh14G004450 vs. ExPASy TrEMBL
Match: A0A0A0LF47 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G810560 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 77/150 (51.33%), Postives = 86/150 (57.33%), Query Frame = 0


Query: 6   IKLGIIVGLKLLEIEPENAG---------------------------------------- 65
           +++GIIVG KLLE+EPENAG                                        
Sbjct: 299 VEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVE 358

Query: 66  ------------------VEVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGH 98
                              EVAKKVKELSIKFKEDGYVP LSCVLYDV EE++EKVLLGH
Sbjct: 359 LDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGH 418

[Close]

BLAST of CmoCh14G004450 vs. ExPASy TrEMBL
Match: A0A1S3B6T6 (putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103486794 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 77/150 (51.33%), Postives = 86/150 (57.33%), Query Frame = 0


Query: 6   IKLGIIVGLKLLEIEPENAG---------------------------------------- 65
           +++GIIVG KLLE+EPENAG                                        
Sbjct: 451 VEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVE 510

Query: 66  ------------------VEVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGH 98
                              EVAKKVKELSIKFKEDGYVP LSCVLYDV EE++EKVLLGH
Sbjct: 511 LDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGH 570

[Close]

BLAST of CmoCh14G004450 vs. ExPASy TrEMBL
Match: A0A6J1DLD3 (putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111021523 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 78/154 (50.65%), Postives = 87/154 (56.49%), Query Frame = 0


Query: 2   VVLLIKLGIIVGLKLLEIEPENAG------------------------------------ 61
           V L + +GIIVG +LLEIEPENAG                                    
Sbjct: 447 VHLNVDIGIIVGQQLLEIEPENAGNYVILSNLYASAGRWEDMRNIRDSMQEKAVIKEPGR 506

Query: 62  ----------------------VEVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKV 98
                                  EVAKKVKELSIKFKEDGYVP LSCVLYDV +E++EKV
Sbjct: 507 SWVELDQVVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDDEQKEKV 566

[Close]

BLAST of CmoCh14G004450 vs. ExPASy TrEMBL
Match: A0A6J1ETZ1 (putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111437677 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.1e-24
Identity = 74/150 (49.33%), Postives = 84/150 (56.00%), Query Frame = 0


Query: 6   IKLGIIVGLKLLEIEPENAG---------------------------------------- 65
           + +GIIVG KLLEIEPENAG                                        
Sbjct: 449 VDIGIIVGQKLLEIEPENAGNYVILSNLHASAGKWEDMRNIRDLMQEKAVIKEPGRSWVE 508

Query: 66  ------------------VEVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGH 98
                              EVA+KVKEL+IKFKE+GYVP LSCVLYDV EE++EKVLLGH
Sbjct: 509 LDQIVHTFHASDHTHPRREEVARKVKELAIKFKEEGYVPNLSCVLYDVDEEQKEKVLLGH 568

[Close]

BLAST of CmoCh14G004450 vs. TAIR 10
Match: AT3G13770.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 104.0 bits (258), Expect = 9.9e-23
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 27  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATI 86
           EV  K+KE+SIK K+ GYVP LSCVLYDV EE++EK+LLGHSEKLAL FGLIAT EG  I
Sbjct: 520 EVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPI 579

Query: 87  HLIKSLRVCVD 98
            + K+LR+CVD
Sbjct: 580 RVFKNLRICVD 590

[Close]

BLAST of CmoCh14G004450 vs. TAIR 10
Match: AT4G37170.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 9.9e-15
Identity = 35/71 (49.30%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 27  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATI 86
           ++ + ++EL  K KE+GYVP  S VL+DV +E++E+ L+ HSEKLA+AF +++T EG  I
Sbjct: 583 QIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAI 642

Query: 87  HLIKSLRVCVD 98
            + K+LR CVD
Sbjct: 643 KVFKNLRSCVD 653

[Close]

BLAST of CmoCh14G004450 vs. TAIR 10
Match: AT2G27610.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-14
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 27  EVAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATI 86
           ++  K+++LS + K+ GY P  S VL D+ +E +E VL  HSE+LA+AFGLIATP+G+ +
Sbjct: 759 QIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPL 818

Query: 87  HLIKSLRVCVD 98
            +IK+LRVC D
Sbjct: 819 LIIKNLRVCGD 829

[Close]

BLAST of CmoCh14G004450 vs. TAIR 10
Match: AT4G16835.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-14
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 28  VAKKVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIH 87
           + KK+KEL  K K  GY P L   L++V EE++EK+LL HSEKLA+AFG I  P+G+ I 
Sbjct: 549 IHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQ 608

Query: 88  LIKSLRVCVD 98
           + K+LR+C D
Sbjct: 609 VFKNLRICGD 618

[Close]

BLAST of CmoCh14G004450 vs. TAIR 10
Match: AT1G47580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 3.8e-14
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 31  KVKELSIKFKEDGYVPCLSCVLYDVHEERREKVLLGHSEKLALAFGLIATPEGATIHLIK 90
           K+K L  + ++ GYVP    VL+D+ EE +EK L+ HSE+LA+AFG+I TP G TI ++K
Sbjct: 135 KLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMK 194

Query: 91  SLRVCVD 98
           +LR+C D
Sbjct: 195 NLRICGD 201

The following BLAST results are available for this feature:

BLAST of CmoCh14G004450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIC3	1.4e-21	70.42	Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS...	[more]
O23169	1.4e-13	49.30	Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX...	[more]
Q9ZUW3	2.4e-13	50.70	Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana OX...	[more]
Q9M4P3	3.1e-13	52.86	Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidop...	[more]
P0C7R1	5.3e-13	50.75	Pentatricopeptide repeat-containing protein DWY1, chloroplastic OS=Arabidopsis t...	[more]

BLAST of CmoCh14G004450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TNQ9	1.5e-26	51.33	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A0A0LF47	1.5e-26	51.33	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8105...	[more]
A0A1S3B6T6	1.5e-26	51.33	putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS...	[more]
A0A6J1DLD3	1.1e-24	50.65	putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS...	[more]
A0A6J1ETZ1	3.1e-24	49.33	putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial OS...	[more]

BLAST of CmoCh14G004450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13770.1	9.9e-23	70.42	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G37170.1	9.9e-15	49.30	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G27610.1	1.7e-14	50.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G16835.1	2.2e-14	52.86	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G47580.1	3.8e-14	50.75	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 27..97 e-value: 3.0E-17 score: 62.7
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 27..97
None	No IPR available	PANTHER	PTHR47926:SF11	SUBFAMILY NOT NAMED	coord: 27..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G004450.1	CmoCh14G004450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding