CmoCh14G003140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G003140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SRP54 domain-containing protein
Location	Cmo_Chr14: 1441357 .. 1441987 (-)
RNA-Seq Expression	CmoCh14G003140
Synteny	CmoCh14G003140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCTCAGGCAGAGATGGCGGAGTAACCAATGCAGCAGGTTCCCGGTTTCCGGCGGACGGTGAGAGAGAGTTAAATCCCGGCCAAAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGTTATTAAGGTAATTTTAACTTTTAGGTTTAGAAATTAAAATTTTATTTTAAGGAATTAAGAAAAATGTATTTAAAAGTTAGAGTATAAAATAATTTTGAAAATTAAAAATAAGTTTCAATAATGATTGAAAAGATTATTAGACGAACACACCCTCGCTCTCATCATGGTCATTCCTTAATTAGAAACGCATGATCATTCTATAAATTAGCCGAGGTGGACTTTCATCGTCCAACAAAGATAATATATTAAAAAAATATAAAACTACGTTAGGTTTAGGTTAAATATAAAGTAAAATTATATTGAAGAAGAAAGTGTTTGTTGGGAAATCTCAGGAGCAAGAGAAGAGAAAAGCAGCTGAAGAAGAACGAAACCGGGTGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATCGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTGCGAGAAAACTGA

mRNA sequence

ATGGCAAGCTCAGGCAGAGATGGCGGAGTAACCAATGCAGCAGGTTCCCGGTTTCCGGCGGACGGTGAGAGAGAGTTAAATCCCGGCCAAAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGTTATTAAGGAGCAAGAGAAGAGAAAAGCAGCTGAAGAAGAACGAAACCGGGTGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATCGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTGCGAGAAAACTGA

Coding sequence (CDS)

ATGGCAAGCTCAGGCAGAGATGGCGGAGTAACCAATGCAGCAGGTTCCCGGTTTCCGGCGGACGGTGAGAGAGAGTTAAATCCCGGCCAAAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGTTATTAAGGAGCAAGAGAAGAGAAAAGCAGCTGAAGAAGAACGAAACCGGGTGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATCGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTGCGAGAAAACTGA

Protein sequence

MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN

Homology

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BLAST of CmoCh14G003140 vs. ExPASy TrEMBL
Match: A0A6J1F5B5 (uncharacterized protein LOC111442294 OS=Cucurbita moschata OX=3662 GN=LOC111442294 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.4e-43
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEE 60
           MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEE
Sbjct: 1   MASSGRDGGVTNAAGSRFPADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEE 60

Query: 61  ERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           ERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN
Sbjct: 61  ERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 101

[Close]

BLAST of CmoCh14G003140 vs. ExPASy TrEMBL
Match: A0A6J1J505 (uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.8e-37
Identity = 94/102 (92.16%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60
           MASS RDGGVTNAAGSRFP  DGERELNPG NK VDVDPISSEAAASLVIKEQEKRKAAE
Sbjct: 1   MASSDRDGGVTNAAGSRFPGVDGERELNPGHNKQVDVDPISSEAAASLVIKEQEKRKAAE 60

Query: 61  EERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EERNR KK EAMQTLKMPFIVSSVIAAVAVVAFAIVK LREN
Sbjct: 61  EERNRAKKKEAMQTLKMPFIVSSVIAAVAVVAFAIVKKLREN 102

[Close]

BLAST of CmoCh14G003140 vs. ExPASy TrEMBL
Match: A0A6J1CUK2 (uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014362 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.0e-24
Identity = 72/102 (70.59%), Postives = 80/102 (78.43%), Query Frame = 0


Query: 1   MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60
           MAS G DGGV++AAGS FP AD +RELNPG N+HV+VDP+SSE A SL  KEQ KRKA E
Sbjct: 1   MASPGGDGGVSDAAGSPFPAADVDRELNPGHNRHVEVDPVSSEVAVSLEKKEQAKRKAVE 60

Query: 61  EERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EER   KK + M+TLK  FIVS VIAAVAV AFAIVK LREN
Sbjct: 61  EERKEAKKNDTMKTLKTTFIVSGVIAAVAVAAFAIVKKLREN 102

[Close]

BLAST of CmoCh14G003140 vs. ExPASy TrEMBL
Match: A0A6J1KYC8 (uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.6e-23
Identity = 70/103 (67.96%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKA-A 60
           MAS GRDGG T  AGSRFPA D +REL+PG N+HV VDPISS+ AAS+  KEQ KRKA  
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EEER + KK + MQTLK  FIVS VIAAVAV AF +VK LR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVIAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CmoCh14G003140 vs. ExPASy TrEMBL
Match: A0A6J1G5S8 (uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC111451047 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.4e-23
Identity = 69/103 (66.99%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKA-A 60
           MAS GRDGG T  AGSRFPA D +REL+PG N+HV VDPISS+ AAS+  KEQ KRKA  
Sbjct: 1   MASPGRDGGATGGAGSRFPAVDVDRELHPGHNQHVTVDPISSQVAASVEDKEQAKRKATV 60

Query: 61  EEERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EEER + KK + MQTLK  FIVS V+AAVAV AF +VK LR+N
Sbjct: 61  EEERKQAKKKDTMQTLKTTFIVSGVVAAVAVAAFVVVKKLRQN 103

[Close]

BLAST of CmoCh14G003140 vs. TAIR 10
Match: AT3G52620.1 (unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 7.5e-12
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 18  FP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKM 77
           FP  D E ELNPGQNK+ +VDP+SSE A+  V K  EKR+ A+ +R      +  +TLK 
Sbjct: 8   FPEGDAEAELNPGQNKNFEVDPVSSEIASEKVQKIVEKRENAKAKR------DGARTLKN 67

Query: 78  PFIVSSVIAAVAVVAFAIVKNLREN 102
             IVS+VI AVA  AFAI K L+EN
Sbjct: 68  TIIVSAVIVAVAGAAFAITKKLKEN 86

The following BLAST results are available for this feature:

BLAST of CmoCh14G003140 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G003140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5B5	6.4e-43	100.00	uncharacterized protein LOC111442294 OS=Cucurbita moschata OX=3662 GN=LOC1114422...	[more]
A0A6J1J505	6.8e-37	92.16	uncharacterized protein LOC111481798 OS=Cucurbita maxima OX=3661 GN=LOC111481798...	[more]
A0A6J1CUK2	1.0e-24	70.59	uncharacterized protein LOC111014362 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1KYC8	5.6e-23	67.96	uncharacterized protein LOC111498680 OS=Cucurbita maxima OX=3661 GN=LOC111498680...	[more]
A0A6J1G5S8	7.4e-23	66.99	uncharacterized protein LOC111451047 OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]

BLAST of CmoCh14G003140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52620.1	7.5e-12	52.94	unknown protein; Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR37741	TRANSMEMBRANE PROTEIN	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G003140.1	CmoCh14G003140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane