CmoCh14G002570 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G002570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr14: 1169304 .. 1169744 (+)
RNA-Seq Expression	CmoCh14G002570
Synteny	CmoCh14G002570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCAATCGCCGACAAGAAGGAGAAAGTGACGATTCGAGCCGTCAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGGCCGAGATCGATACTCGCAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATTGACAAGGGAGTCCAGCGCCTCGACCGCCATCCGGTTCATACCCGGACTGGAATCGCCCAGCCGCCGCCCAAGTCCGGCCACGGCGGCAAGTTCACTTGGGAGGGACCCAGCGATGCGATTGAGAACGAGCTCTCCCCTGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGAGAAGTGGAGGTGGCGAAGGCGGCGGCGGTCACGGAGGGGGTTGCGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAATGA

mRNA sequence

ATGAAGCCAATCGCCGACAAGAAGGAGAAAGTGACGATTCGAGCCGTCAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGGCCGAGATCGATACTCGCAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATTGACAAGGGAGTCCAGCGCCTCGACCGCCATCCGGTTCATACCCGGACTGGAATCGCCCAGCCGCCGCCCAAGTCCGGCCACGGCGGCAAGTTCACTTGGGAGGGACCCAGCGATGCGATTGAGAACGAGCTCTCCCCTGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGAGAAGTGGAGGTGGCGAAGGCGGCGGCGGTCACGGAGGGGGTTGCGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAATGA

Coding sequence (CDS)

ATGAAGCCAATCGCCGACAAGAAGGAGAAAGTGACGATTCGAGCCGTCAGCCGCGACGAGGAAGGGAAAAAGCGAGTCGAAAAGGCCGAGATCGATACTCGCAACATCGACACCATCAAGTACGTCGAGAAGAAGCTCATTGACAAGGGAGTCCAGCGCCTCGACCGCCATCCGGTTCATACCCGGACTGGAATCGCCCAGCCGCCGCCCAAGTCCGGCCACGGCGGCAAGTTCACTTGGGAGGGACCCAGCGATGCGATTGAGAACGAGCTCTCCCCTGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGAGAAGTGGAGGTGGCGAAGGCGGCGGCGGTCACGGAGGGGGTTGCGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAATGA

Protein sequence

MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVHTRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEVAGLVVGEVEVAKAAAVTEGVARVEVDPRLQLQ

Homology

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BLAST of CmoCh14G002570 vs. ExPASy TrEMBL
Match: A0A6J1F9T7 (uncharacterized protein LOC111442115 OS=Cucurbita moschata OX=3662 GN=LOC111442115 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.6e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH
Sbjct: 1   MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH 60

Query: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEVAGLVVG 120
           TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEVAGLVVG
Sbjct: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEVAGLVVG 120

Query: 121 EVEVAKAAAVTEGVARVEVDPRLQLQ 147
           EVEVAKAAAVTEGVARVEVDPRLQLQ
Sbjct: 121 EVEVAKAAAVTEGVARVEVDPRLQLQ 146

[Close]

BLAST of CmoCh14G002570 vs. ExPASy TrEMBL
Match: A0A6J1J6Y7 (uncharacterized protein LOC111481791 OS=Cucurbita maxima OX=3661 GN=LOC111481791 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 143/147 (97.28%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPI DKKEKVTIRAVSRDEEGKKRVEKAEI +RNIDTIKYVEKKLIDKGVQRLDRHPVH
Sbjct: 1   MKPIDDKKEKVTIRAVSRDEEGKKRVEKAEIVSRNIDTIKYVEKKLIDKGVQRLDRHPVH 60

Query: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVK-EEEVAGLVV 120
           TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVK EEEVAGLVV
Sbjct: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEEVAGLVV 120

Query: 121 GEVEVAKAAAVTEGVARVEVDPRLQLQ 147
           GEVEVAKAAAVTEGVARVEVDPRLQLQ
Sbjct: 121 GEVEVAKAAAVTEGVARVEVDPRLQLQ 147

[Close]

BLAST of CmoCh14G002570 vs. ExPASy TrEMBL
Match: A0A0A0LDV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G748780 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.7e-57
Identity = 121/146 (82.88%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPI DKK+KVTIRAVSRDEEGKK VEKAEI++ NIDTIKY+EKKLIDKG+QRL+RHPVH
Sbjct: 1   MKPIDDKKDKVTIRAVSRDEEGKKHVEKAEIESHNIDTIKYIEKKLIDKGIQRLERHPVH 60

Query: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKEEEVAGLVVG 120
             TGI QPPPKSG GGKFTWEGP DAIENELSPAP AIDE DPNYVDE +EEEVAGLVVG
Sbjct: 61  GHTGIGQPPPKSGRGGKFTWEGPGDAIENELSPAPPAIDEKDPNYVDEEEEEEVAGLVVG 120

Query: 121 EVEVAKAAAVTEGVARVEVDPRLQLQ 147
           EVEV   AA  EGV+RVEVDP+LQLQ
Sbjct: 121 EVEV--PAAAPEGVSRVEVDPQLQLQ 144

[Close]

BLAST of CmoCh14G002570 vs. ExPASy TrEMBL
Match: A0A5A7TM42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003410 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.6e-57
Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPI +KK+KVTIRAV+RDEEGKK +EKAEI++ NIDTIKY+EKKLIDKGVQRL+RHPVH
Sbjct: 1   MKPIDEKKDKVTIRAVTRDEEGKKHIEKAEIESHNIDTIKYIEKKLIDKGVQRLERHPVH 60

Query: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVK--EEEVAGLV 120
             TGIAQPPPKSG GGKFTWEGP DAIENELSPAP AIDE DPNYVDEVK  EEEVAGLV
Sbjct: 61  GHTGIAQPPPKSGRGGKFTWEGPGDAIENELSPAPPAIDEKDPNYVDEVKEEEEEVAGLV 120

Query: 121 VGEVEVAKAAAVTEGVARVEVDPRLQLQ 147
           VGEVEV   AA  EGV+RVEVDP+LQLQ
Sbjct: 121 VGEVEV--PAAAPEGVSRVEVDPQLQLQ 146

[Close]

BLAST of CmoCh14G002570 vs. ExPASy TrEMBL
Match: A0A1S3B6J5 (uncharacterized protein LOC103486565 OS=Cucumis melo OX=3656 GN=LOC103486565 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.6e-57
Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 0


Query: 1   MKPIADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVH 60
           MKPI +KK+KVTIRAV+RDEEGKK +EKAEI++ NIDTIKY+EKKLIDKGVQRL+RHPVH
Sbjct: 1   MKPIDEKKDKVTIRAVTRDEEGKKHIEKAEIESHNIDTIKYIEKKLIDKGVQRLERHPVH 60

Query: 61  TRTGIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVK--EEEVAGLV 120
             TGIAQPPPKSG GGKFTWEGP DAIENELSPAP AIDE DPNYVDEVK  EEEVAGLV
Sbjct: 61  GHTGIAQPPPKSGRGGKFTWEGPGDAIENELSPAPPAIDEKDPNYVDEVKEEEEEVAGLV 120

Query: 121 VGEVEVAKAAAVTEGVARVEVDPRLQLQ 147
           VGEVEV   AA  EGV+RVEVDP+LQLQ
Sbjct: 121 VGEVEV--PAAAPEGVSRVEVDPQLQLQ 146

[Close]

BLAST of CmoCh14G002570 vs. TAIR 10
Match: AT3G10020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-31
Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 4   IADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVHTRT 63
           + + K  V +RA  ++EEG+K V+K E+ TRN +TIK VE+KL++KGVQR+DRHP     
Sbjct: 6   VDETKNTVVLRAEHKNEEGRKSVDKFEVKTRNPETIKSVERKLMEKGVQRMDRHP-SDGI 65

Query: 64  GIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDE-VK---EEEVAGLVV 123
            + +PP KSGHGGK+TWEGP    + E+ P P A+DE DPNY +E VK   ++    LV 
Sbjct: 66  PLRRPPSKSGHGGKYTWEGPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAVELVK 125

Query: 124 GEVEVAKAAAVTEGVARVEVDPRL 144
           GEVEVAK A    GVARVEVDPRL
Sbjct: 126 GEVEVAKEAPA--GVARVEVDPRL 146

[Close]

BLAST of CmoCh14G002570 vs. TAIR 10
Match: AT3G10020.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-25
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 0


Query: 4   IADKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVHTRT 63
           + + K  V +RA  ++EEG+K V+K E+ TRN +TIK VE+KL++KGVQR+DRHP     
Sbjct: 6   VDETKNTVVLRAEHKNEEGRKSVDKFEVKTRNPETIKSVERKLMEKGVQRMDRHP-SDGI 65

Query: 64  GIAQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDE-VK---EEEVAGLVV 123
            + +PP KSGHGGK+TWEGP    + E+ P P A+DE DPNY +E VK   ++    LV 
Sbjct: 66  PLRRPPSKSGHGGKYTWEGPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAVELVK 125

The following BLAST results are available for this feature:

BLAST of CmoCh14G002570 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G002570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F9T7	5.6e-72	100.00	uncharacterized protein LOC111442115 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1J6Y7	2.2e-68	97.28	uncharacterized protein LOC111481791 OS=Cucurbita maxima OX=3661 GN=LOC111481791...	[more]
A0A0A0LDV1	1.7e-57	82.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G748780 PE=4 SV=1	[more]
A0A5A7TM42	8.6e-57	82.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B6J5	8.6e-57	82.43	uncharacterized protein LOC103486565 OS=Cucumis melo OX=3656 GN=LOC103486565 PE=...	[more]

BLAST of CmoCh14G002570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10020.1	6.1e-31	54.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT3G10020.2	5.0e-25	50.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G002570.1	CmoCh14G002570.1	mRNA