CmoCh14G001140 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G001140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Legume-specific protein
Location	Cmo_Chr14: 518392 .. 518661 (-)
RNA-Seq Expression	CmoCh14G001140
Synteny	CmoCh14G001140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTATAATTCCCTTTGTCTACAAAGCGATTGTTCAATACAAGAACGAAAAACAAGTACCGGCGATTCGATCATGGCTCTGCGACTCCCCGTCCACGTCCTACATCAGACTTCCCAGCGGTGATTCCGGCCGATTTCAAGACGGTTCATATTCCGCCGCCTCACCTTCTTCCAAATCAGCCTCTTCCACTACCACCCAGATTCTGATTTCCACCGGAGTTCAGTCGCCGCTCCGCCATCTGACGCCTCGTCGGGTTGCCGCCTGA

mRNA sequence

ATGGAAGGTATAATTCCCTTTGTCTACAAAGCGATTGTTCAATACAAGAACGAAAAACAAGTACCGGCGATTCGATCATGGCTCTGCGACTCCCCGTCCACGTCCTACATCAGACTTCCCAGCGGTGATTCCGGCCGATTTCAAGACGGTTCATATTCCGCCGCCTCACCTTCTTCCAAATCAGCCTCTTCCACTACCACCCAGATTCTGATTTCCACCGGAGTTCAGTCGCCGCTCCGCCATCTGACGCCTCGTCGGGTTGCCGCCTGA

Coding sequence (CDS)

ATGGAAGGTATAATTCCCTTTGTCTACAAAGCGATTGTTCAATACAAGAACGAAAAACAAGTACCGGCGATTCGATCATGGCTCTGCGACTCCCCGTCCACGTCCTACATCAGACTTCCCAGCGGTGATTCCGGCCGATTTCAAGACGGTTCATATTCCGCCGCCTCACCTTCTTCCAAATCAGCCTCTTCCACTACCACCCAGATTCTGATTTCCACCGGAGTTCAGTCGCCGCTCCGCCATCTGACGCCTCGTCGGGTTGCCGCCTGA

Protein sequence

MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSKSASSTTTQILISTGVQSPLRHLTPRRVAA

Homology

[Close]

BLAST of CmoCh14G001140 vs. ExPASy TrEMBL
Match: A0A0A0LD26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-31
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ    S ASPSSK
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ--FQSDASPSSK 60

Query: 61 S-ASSTTTQILISTGVQSPLRHLTPRRVAA 90
          S  SSTTTQIL+STGVQSPLRHLT RRVAA
Sbjct: 61 SPTSSTTTQILVSTGVQSPLRHLTTRRVAA 88

[Close]

BLAST of CmoCh14G001140 vs. ExPASy TrEMBL
Match: A0A5D3DNC7 (Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001410 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.4e-31
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ    S ASPSSK
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ--FQSDASPSSK 60

Query: 61 S--ASSTTTQILISTGVQSPLRHLTPRRVAA 90
          S  +S+T TQIL+STGVQSPLRHLT RRVAA
Sbjct: 61 SPTSSTTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of CmoCh14G001140 vs. ExPASy TrEMBL
Match: K7MT87 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.9e-20
Identity = 60/94 (63.83%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ----DGSYSAAS 60
          MEG+IPFVYKAI+QYK +K    I SWLC+SPS SY+RLP+GDSGRFQ      S+SAAS
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSSKSA-SSTTTQILISTGVQSPLRHLTPRRVAA 90
          PSS +  SS+ TQI++S+GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of CmoCh14G001140 vs. ExPASy TrEMBL
Match: A0A0B2P904 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 59/94 (62.77%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ----DGSYSAAS 60
          MEG+IPFVYKAI+QYK +K    I SWLC+SPS SY+RLP+GDSGRFQ      S+SAAS
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSSKSA-SSTTTQILISTGVQSPLRHLTPRRVAA 90
          PSS +  SS+ TQI++S+GVQSP + LT R +AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRPIAA 94

[Close]

BLAST of CmoCh14G001140 vs. ExPASy TrEMBL
Match: C6SZB5 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.7e-19
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQ----DGSYSAAS 60
          ME +IPFVYKAI+QYK  K    I SWLC+SPS SY+RLP+GDSGRFQ      S+SAAS
Sbjct: 1  MESLIPFVYKAIMQYKGGKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIRAPASSFSAAS 60

Query: 61 PSSKSA-SSTTTQILISTGVQSPLRHLTPRRVAA 90
          PSS +  SS+ TQI++S+GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of CmoCh14G001140 vs. TAIR 10
Match: AT2G37750.1 (unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.1e-06
Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 1  MEGIIPFVYKAIVQ--YKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPS 60
          MEG+IP VYKA++Q  Y NE Q            S+ Y+RLP GDSGRF       + P 
Sbjct: 1  MEGLIPLVYKAVMQIRYGNESQ---------QLSSSYYVRLP-GDSGRFVRSDLDVSGPG 60

Query: 61 SK-----SASSTTTQILISTGVQSPL 80
          S      S+S++TT   +  GVQSP+
Sbjct: 61 SNSSNRASSSTSTTTFAVYAGVQSPV 76

[Close]

BLAST of CmoCh14G001140 vs. TAIR 10
Match: AT5G02090.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.6e-05
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTS--YIRLPSGDSGRFQ 49
          MEG+IPF+YKAIV YK E    ++      SPS +  Y+RLP   S RF+
Sbjct: 1  MEGLIPFLYKAIVMYKREGSFSSVLLSDHHSPSNAGYYMRLPGDSSSRFR 50

The following BLAST results are available for this feature:

BLAST of CmoCh14G001140 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G001140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD26	1.0e-31	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1	[more]
A0A5D3DNC7	8.4e-31	85.71	Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
K7MT87	3.9e-20	63.83	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1	[more]
A0A0B2P904	2.5e-19	62.77	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1	[more]
C6SZB5	5.7e-19	62.77	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of CmoCh14G001140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37750.1	1.1e-06	41.86	unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bact...	[more]
AT5G02090.1	4.6e-05	48.00	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..67
None	No IPR available	PANTHER	PTHR34670	EXPRESSED PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR34670:SF10	LEGUME-SPECIFIC PROTEIN	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G001140.1	CmoCh14G001140.1	mRNA