CmoCh14G000940 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G000940
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	PAR1 protein
Location	Cmo_Chr14: 446166 .. 447370 (+)
RNA-Seq Expression	CmoCh14G000940
Synteny	CmoCh14G000940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCACCCGAACCACCCTTCAAAACCCGGCGTCGCTGTGTGTACGTCTCTGGGTTGCTCTCTATTTATACCCCATTCACAACCTTTCCTTCAATTGCAACTCCCTCGATATCTATAAATCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAATTCCACCATTTGATTAAAACTCCCCATGGCTATCTCCAACAAAATGGCGTTGCTTCTCTTCATCTCCTCTGTTTTCGTCTCTGCAGCTCTTGGTACGTTCATATAAAACGCCGTCTTTGTTTGGATGCAAGTTCGATCATGGGTTTATAATCAAGGAATACCTAACAACGTTTGATATTCATCTAACAGTCTTATCTATTTGTTTTCCAAGGGCGGGACACGTTTGACATGAAATTCTTGTTCTGTTTTTGTTGTCGTCGTTGCAGGGGAGCTTGTGTGCGAGGAGTTGTCGGTGGATGTGTGCGCTTTTTCAATAGCCTCATCGGGGAAGAGATGTTTGTTGGAGACATCTGAGAACAAAGATGGGAAGCTTGAGTATCAATGCAGGACCTCGGAGGTGATGGTGGAATGGATGTCTAACTACATTGAGACGGATCGGTGCATCAACGCTTGTGGCCTGGACCGCAACTCCGTGGGAATTGCCTCAGACGCCCTCCTCGACCCTCGCTTCACCGCCAGCCTCTGCTCTCCCGCCTGCTACCAGAAGTGCCCCAATATTGTGGACCTTTACTTCAACATGGCTGCAGGAGAGGGTGAGCCCTGTTTTAGAAACAACTCATAATTTTCTCAAAACCCTACACCTTCCTAATTACAATGAATATTGCAGGAGTGTTCTTGCCCGACCTTTGTGAGAGGCAACGCACCAACCCCCACCGTGCCATGGTAGAGCTGTTGAGCTCCGGGGCTGCCGCGGGTCCGGTGTCATCCGCAGCCGCCACAGGAGTGTTCCCTGCAGCCGATGCCCCAGCTCCCATGTGAAAATTAAGTTAATTTATTATTGGGTTTTTTCATTGTTAATTTCTTTTATACAGTTGTGAGGTAATAAATAGAATAGTAAAAGATGAGTGATTTTCTTCGGAATTCACCTTTTATTTCGATATCATAAGACGTACGACGTCGTTTCCTTTTGTTCTTCTTTTCAAATTTCCCACACACAGCGAGTCGATGTATACTTTTAGTTTCGTGTAATAATAAAACATTGCTTTATATA

mRNA sequence

GCACCCGAACCACCCTTCAAAACCCGGCGTCGCTGTGTGTACGTCTCTGGGTTGCTCTCTATTTATACCCCATTCACAACCTTTCCTTCAATTGCAACTCCCTCGATATCTATAAATCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAATTCCACCATTTGATTAAAACTCCCCATGGCTATCTCCAACAAAATGGCGTTGCTTCTCTTCATCTCCTCTGTTTTCGTCTCTGCAGCTCTTGGGGAGCTTGTGTGCGAGGAGTTGTCGGTGGATGTGTGCGCTTTTTCAATAGCCTCATCGGGGAAGAGATGTTTGTTGGAGACATCTGAGAACAAAGATGGGAAGCTTGAGTATCAATGCAGGACCTCGGAGGTGATGGTGGAATGGATGTCTAACTACATTGAGACGGATCGGTGCATCAACGCTTGTGGCCTGGACCGCAACTCCGTGGGAATTGCCTCAGACGCCCTCCTCGACCCTCGCTTCACCGCCAGCCTCTGCTCTCCCGCCTGCTACCAGAAGTGCCCCAATATTGTGGACCTTTACTTCAACATGGCTGCAGGAGAGGGAGTGTTCTTGCCCGACCTTTGTGAGAGGCAACGCACCAACCCCCACCGTGCCATGGTAGAGCTGTTGAGCTCCGGGGCTGCCGCGGGTCCGGTGTCATCCGCAGCCGCCACAGGAGTGTTCCCTGCAGCCGATGCCCCAGCTCCCATGTGAAAATTAAGTTAATTTATTATTGGGTTTTTTCATTGTTAATTTCTTTTATACAGTTGTGAGGTAATAAATAGAATAGTAAAAGATGAGTGATTTTCTTCGGAATTCACCTTTTATTTCGATATCATAAGACGTACGACGTCGTTTCCTTTTGTTCTTCTTTTCAAATTTCCCACACACAGCGAGTCGATGTATACTTTTAGTTTCGTGTAATAATAAAACATTGCTTTATATA

Coding sequence (CDS)

ATGGCTATCTCCAACAAAATGGCGTTGCTTCTCTTCATCTCCTCTGTTTTCGTCTCTGCAGCTCTTGGGGAGCTTGTGTGCGAGGAGTTGTCGGTGGATGTGTGCGCTTTTTCAATAGCCTCATCGGGGAAGAGATGTTTGTTGGAGACATCTGAGAACAAAGATGGGAAGCTTGAGTATCAATGCAGGACCTCGGAGGTGATGGTGGAATGGATGTCTAACTACATTGAGACGGATCGGTGCATCAACGCTTGTGGCCTGGACCGCAACTCCGTGGGAATTGCCTCAGACGCCCTCCTCGACCCTCGCTTCACCGCCAGCCTCTGCTCTCCCGCCTGCTACCAGAAGTGCCCCAATATTGTGGACCTTTACTTCAACATGGCTGCAGGAGAGGGAGTGTTCTTGCCCGACCTTTGTGAGAGGCAACGCACCAACCCCCACCGTGCCATGGTAGAGCTGTTGAGCTCCGGGGCTGCCGCGGGTCCGGTGTCATCCGCAGCCGCCACAGGAGTGTTCCCTGCAGCCGATGCCCCAGCTCCCATGTGA

Protein sequence

MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEYQCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNIVDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAPM

Homology

[Close]

BLAST of CmoCh14G000940 vs. ExPASy TrEMBL
Match: A0A6J1F1D5 (uncharacterized protein LOC111441487 OS=Cucurbita moschata OX=3662 GN=LOC111441487 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.6e-95
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 1   MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEY 60
           MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEY
Sbjct: 1   MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEY 60

Query: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNI 120
           QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNI
Sbjct: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP 180
           VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP
Sbjct: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP 180

Query: 181 M 182
           M
Sbjct: 181 M 181

[Close]

BLAST of CmoCh14G000940 vs. ExPASy TrEMBL
Match: A0A6J1IZF1 (uncharacterized protein LOC111482073 OS=Cucurbita maxima OX=3661 GN=LOC111482073 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.4e-93
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 1   MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEY 60
           MAISNKMALLLFISS FVSAALGELVCEELSVDVCAFSIASSGKRC LETSENKDGKLEY
Sbjct: 1   MAISNKMALLLFISSAFVSAALGELVCEELSVDVCAFSIASSGKRCSLETSENKDGKLEY 60

Query: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNI 120
           QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTA+LCSPACYQKCPNI
Sbjct: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTANLCSPACYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP 180
           VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP
Sbjct: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP 180

Query: 181 M 182
           M
Sbjct: 181 M 181

[Close]

BLAST of CmoCh14G000940 vs. ExPASy TrEMBL
Match: A0A6J1CV35 (uncharacterized protein LOC111015053 OS=Momordica charantia OX=3673 GN=LOC111015053 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.0e-83
Identity = 157/181 (86.74%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 1   MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEY 60
           MA SNK A LLF+SS+F+SAA+GELVCEELSVDVCAFSIASSGKRCLLETSENKDGK EY
Sbjct: 1   MAFSNKFAALLFVSSLFLSAAVGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKFEY 60

Query: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNI 120
           QCRTSEVMVEWM+ YIE+D CINACGLDRNSVGIASDALL+P FTA LCSP CYQKCPNI
Sbjct: 61  QCRTSEVMVEWMAEYIESDHCINACGLDRNSVGIASDALLEPHFTAKLCSPPCYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP 180
           VDLYFNMAAGEGVFLPDLCERQRT+PHRAM ELLSSGAAAGP+SS AATG+ P A+APAP
Sbjct: 121 VDLYFNMAAGEGVFLPDLCERQRTSPHRAMAELLSSGAAAGPMSSEAATGILPTAEAPAP 180

Query: 181 M 182
           M
Sbjct: 181 M 181

[Close]

BLAST of CmoCh14G000940 vs. ExPASy TrEMBL
Match: A0A5A7TQL9 (PAR1 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001180 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 155/181 (85.64%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 1   MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEY 60
           MAI NK+A LLFISS+FVSAA GE+VCEELSVDVCAFSIASSGKRCLLETSE K+GK EY
Sbjct: 1   MAIPNKLAFLLFISSLFVSAAFGEIVCEELSVDVCAFSIASSGKRCLLETSETKEGKFEY 60

Query: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNI 120
           QCRTSEVMVEWM++YIETD+CINACGLDRNSVGIASDALL+P+FTA LCSP+CYQKCPNI
Sbjct: 61  QCRTSEVMVEWMADYIETDQCINACGLDRNSVGIASDALLEPQFTAKLCSPSCYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP 180
           VDLYFNMAAGEGVFLPDLCE+QRTNPHRAM ELLSSG AA P+SSA    VFPAA+APAP
Sbjct: 121 VDLYFNMAAGEGVFLPDLCEKQRTNPHRAMAELLSSGIAAAPMSSAEINAVFPAAEAPAP 180

Query: 181 M 182
           M
Sbjct: 181 M 181

[Close]

BLAST of CmoCh14G000940 vs. ExPASy TrEMBL
Match: A0A1S3B6J4 (uncharacterized protein LOC103486338 OS=Cucumis melo OX=3656 GN=LOC103486338 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 155/181 (85.64%), Postives = 168/181 (92.82%), Query Frame = 0


Query: 1   MAISNKMALLLFISSVFVSAALGELVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEY 60
           MAI NK+A LLFISS+FVSAA GE+VCEELSVDVCAFSIASSGKRCLLETSE K+GK EY
Sbjct: 1   MAIPNKLAFLLFISSLFVSAAFGEIVCEELSVDVCAFSIASSGKRCLLETSETKEGKFEY 60

Query: 61  QCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNI 120
           QCRTSEVMVEWM++YIETD+CINACGLDRNSVGIASDALL+P+FTA LCSP+CYQKCPNI
Sbjct: 61  QCRTSEVMVEWMADYIETDQCINACGLDRNSVGIASDALLEPQFTAKLCSPSCYQKCPNI 120

Query: 121 VDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPAP 180
           VDLYFNMAAGEGVFLPDLCE+QRTNPHRAM ELLSSG AA P+SSA    VFPAA+APAP
Sbjct: 121 VDLYFNMAAGEGVFLPDLCEKQRTNPHRAMAELLSSGIAAAPMSSAEINAVFPAAEAPAP 180

Query: 181 M 182
           M
Sbjct: 181 M 181

[Close]

BLAST of CmoCh14G000940 vs. TAIR 10
Match: AT3G54040.1 (PAR1 protein )

HSP 1 Score: 184.9 bits (468), Expect = 5.8e-47
Identity = 97/177 (54.80%), Postives = 130/177 (73.45%), Query Frame = 0


Query: 4   SNKMALLLFISSVFVSAALGE-LVCEELSVDVCAFSIASSGKRCLLETSENKDGKLEYQC 63
           S K+ + L +SS+ + AA+GE +VCE L  ++C+FSI++SGKRC+LET+ N  G  E+ C
Sbjct: 5   SLKLPIFLILSSL-LHAAIGENIVCENLPTNMCSFSISASGKRCILETA-NVAG--EFTC 64

Query: 64  RTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPNIVD 123
           RTS V VE + N++ETD C++ACG+DR +VGI+SD+L++  F A LCS AC   CPNI+D
Sbjct: 65  RTSAVDVEGIVNHVETDECVSACGVDRKTVGISSDSLMEAGFAAKLCSSACLDYCPNILD 124

Query: 124 LYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSGAAAGPVSSAAATGVFPAADAPA 180
           LYFN+AAGEG FLPDLC+ QR NP R+M+E +SSGAA GPVS  A         +PA
Sbjct: 125 LYFNLAAGEGAFLPDLCDAQRMNPQRSMMEFISSGAAPGPVSEIAPGPTSEEVSSPA 177

[Close]

BLAST of CmoCh14G000940 vs. TAIR 10
Match: AT5G52390.1 (PAR1 protein )

HSP 1 Score: 157.9 bits (398), Expect = 7.6e-39
Identity = 86/194 (44.33%), Postives = 117/194 (60.31%), Query Frame = 0


Query: 1   MAISNKMALLLFISSVFVSAALGELV-CEELSVDVCAFSIASSGKRCLLETSENKDGKLE 60
           MA+       + + +++     G+ V CE L  + CAF+++S+GKRC+LE S  + G   
Sbjct: 1   MALKTVFVAFMILLAIYSQTTFGDDVKCENLDENTCAFAVSSTGKRCVLEKSMKRSGIEV 60

Query: 61  YQCRTSEVMVEWMSNYIETDRCINACGLDRNSVGIASDALLDPRFTASLCSPACYQKCPN 120
           Y CR+SE+    ++N IE+D CI ACGLDR ++GI+SDALL+ +FT  LCS  C  +CPN
Sbjct: 61  YTCRSSEIEANKVTNIIESDECIKACGLDRKALGISSDALLESQFTHKLCSVKCLNQCPN 120

Query: 121 IVDLYFNMAAGEGVFLPDLCERQRTNPHRAMVELLSSG------AAAGPV-------SSA 180
           +VDLYFN+AAGEGV+LP LCE Q     RAM E+ SSG      A  GPV         A
Sbjct: 121 VVDLYFNLAAGEGVYLPKLCESQEGKSRRAMSEIRSSGIAMDTLAPVGPVMLGEIAPEPA 180

The following BLAST results are available for this feature:

BLAST of CmoCh14G000940 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G000940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F1D5	7.6e-95	100.00	uncharacterized protein LOC111441487 OS=Cucurbita moschata OX=3662 GN=LOC1114414...	[more]
A0A6J1IZF1	2.4e-93	98.34	uncharacterized protein LOC111482073 OS=Cucurbita maxima OX=3661 GN=LOC111482073...	[more]
A0A6J1CV35	1.0e-83	86.74	uncharacterized protein LOC111015053 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5A7TQL9	2.5e-82	85.64	PAR1 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001180 ...	[more]
A0A1S3B6J4	2.5e-82	85.64	uncharacterized protein LOC103486338 OS=Cucumis melo OX=3656 GN=LOC103486338 PE=...	[more]

BLAST of CmoCh14G000940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54040.1	5.8e-47	54.80	PAR1 protein	[more]
AT5G52390.1	7.6e-39	44.33	PAR1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009489	PAR1	PFAM	PF06521	PAR1	coord: 25..180 e-value: 3.4E-72 score: 241.2
IPR009489	PAR1	PANTHER	PTHR33649	PAR1 PROTEIN	coord: 9..181
None	No IPR available	PANTHER	PTHR33649:SF14	PAR1-RELATED	coord: 9..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G000940.1	CmoCh14G000940.1	mRNA