CmoCh14G000230 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G000230
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr14: 116068 .. 117555 (+)
RNA-Seq ExpressionCmoCh14G000230
SyntenyCmoCh14G000230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCATCAGGGTTGTGAAGAGGAGCGACCACTTCCTCAGAAAACACAGGAAGTGCCCATTTTCACCCTTCAAAACCAAATGGCATCAAACCTTCAATCAGGATGAAGCTCTGCGGGCCATTAAACAAGCTGCAAATTCGCCGAAACAACCCAATTCCGACGAACCCTACCTTCTTTCGGTTCTTATAAGCTCCTTCAGAGCCTATTGCTGCGATCCAACCCCCAATGCCTACCACTTCGTCCTCAAAACCTTTGTTCGAAGCTCACAGTTCCACTACATTGCCGCTGTTCTCGATCGTCTCGAACGCGTCGAGAAATTTGAAACCCCAGAGTACATATTTGTCGACCTCCTCAAAGTTTACGGACGAGTCAACCGAATTCAAGATGCCATCACTCTGTTCCGTAGGATTCCCATGTTTAGGTGCGTTCCTTCTGCGCTCTCACTCAACTCTCTACTTTTCCTGCTCTGTAGAAATGGCGAAGGTCTTCGAATAGTTCCTGAGATCATATTGAGTAGCCAGACTATGGGTATTAGGCTTGAAGAGTCCACTTTTCGGATACTAATTACTGCGTTATGTAAAATTTATAAAGTTGGGCATGCAATGGAGCTTTTCAATTATATGATAACTGAAGGGTATGGTCTGAACCCTGGAATCTCCTCTTTGATATTGGCATCGCTATGTGAGCATAAGAAATCCACTGGTAATGTGGTTCTTACCTTTCTGGAACAAATGAGGCTAAAAGGATTCTGTCCCGGTGTTGTGGATTATTCTAATGTAATTAAGTTCTTGGTTAGGAGAGGGCTGAGTTCAGACGCTCTTGATCTGTTGAATAAAATGAAGGCCGATGGTTTCAAGCCTGACATTGTTTGTTATACTATGGTCTTGAATGGGGTGATTGCGGATGGGGATTATAAGATGGCAGATGAACTGTTTGATGAATTGCTTCTCTTTGGTTTAGTTCCTGATATTTATACATACAACGTGTACATACATGGATTATGCAAACAAGGCAATTGGGAAGCAGGGATTCAAATGATTTTGCCTATGGAGGAATTGGGGTGCAAACCTGATGTGATCACTTACAATATTCTCTTGGAATGTTTGTGTAAAATCGGTGAACTTGATGAGGCAAGGAAGCTTCGAGGTAACATGCAACTAAAGGGTCTGGCAAAAAACGTGCGGACTTTTACGATTATGATCAGTGGGTTGTTTAATAACGGTGATGTAATTGAAGCTTGTATCCTATTGGAGGAAATGCTAGTAAGTCGTTTCCCTCCTCAGATTTCAACTTTTGGTGAGATACTTTCTTGGCTGTGCAAAAGGGACATGGTAGGCAAAGCGCTTGAGCTGCTCACGTTAATGGTTGGCATGAACTTTTCCCCTGGTCCTAAGGCTTGGGAAACACTGCTCCTGAGCTCTGAAAGTGAATTAACTTCTGTTAAGAGCCTTGAAACTACTTTAGAAGATTTAGTAGGCATCTGA

mRNA sequence

ATGGAAAGCATCAGGGTTGTGAAGAGGAGCGACCACTTCCTCAGAAAACACAGGAAGTGCCCATTTTCACCCTTCAAAACCAAATGGCATCAAACCTTCAATCAGGATGAAGCTCTGCGGGCCATTAAACAAGCTGCAAATTCGCCGAAACAACCCAATTCCGACGAACCCTACCTTCTTTCGGTTCTTATAAGCTCCTTCAGAGCCTATTGCTGCGATCCAACCCCCAATGCCTACCACTTCGTCCTCAAAACCTTTGTTCGAAGCTCACAGTTCCACTACATTGCCGCTGTTCTCGATCGTCTCGAACGCGTCGAGAAATTTGAAACCCCAGAGTACATATTTGTCGACCTCCTCAAAGTTTACGGACGAGTCAACCGAATTCAAGATGCCATCACTCTGTTCCGTAGGATTCCCATGTTTAGGTGCGTTCCTTCTGCGCTCTCACTCAACTCTCTACTTTTCCTGCTCTGTAGAAATGGCGAAGGTCTTCGAATAGTTCCTGAGATCATATTGAGTAGCCAGACTATGGGTATTAGGCTTGAAGAGTCCACTTTTCGGATACTAATTACTGCGTTATGTAAAATTTATAAAGTTGGGCATGCAATGGAGCTTTTCAATTATATGATAACTGAAGGGTATGGTCTGAACCCTGGAATCTCCTCTTTGATATTGGCATCGCTATGTGAGCATAAGAAATCCACTGGTAATGTGGTTCTTACCTTTCTGGAACAAATGAGGCTAAAAGGATTCTGTCCCGGTGTTGTGGATTATTCTAATGTAATTAAGTTCTTGGTTAGGAGAGGGCTGAGTTCAGACGCTCTTGATCTGTTGAATAAAATGAAGGCCGATGGTTTCAAGCCTGACATTGTTTGTTATACTATGGTCTTGAATGGGGTGATTGCGGATGGGGATTATAAGATGGCAGATGAACTGTTTGATGAATTGCTTCTCTTTGGTTTAGTTCCTGATATTTATACATACAACGTGTACATACATGGATTATGCAAACAAGGCAATTGGGAAGCAGGGATTCAAATGATTTTGCCTATGGAGGAATTGGGGTGCAAACCTGATGTGATCACTTACAATATTCTCTTGGAATGTTTGTGTAAAATCGGTGAACTTGATGAGGCAAGGAAGCTTCGAGGTAACATGCAACTAAAGGGTCTGGCAAAAAACGTGCGGACTTTTACGATTATGATCAGTGGGTTGTTTAATAACGGTGATGTAATTGAAGCTTGTATCCTATTGGAGGAAATGCTAGTAAGTCGTTTCCCTCCTCAGATTTCAACTTTTGGTGAGATACTTTCTTGGCTGTGCAAAAGGGACATGGTAGGCAAAGCGCTTGAGCTGCTCACGTTAATGGTTGGCATGAACTTTTCCCCTGGTCCTAAGGCTTGGGAAACACTGCTCCTGAGCTCTGAAAGTGAATTAACTTCTGTTAAGAGCCTTGAAACTACTTTAGAAGATTTAGTAGGCATCTGA

Coding sequence (CDS)

ATGGAAAGCATCAGGGTTGTGAAGAGGAGCGACCACTTCCTCAGAAAACACAGGAAGTGCCCATTTTCACCCTTCAAAACCAAATGGCATCAAACCTTCAATCAGGATGAAGCTCTGCGGGCCATTAAACAAGCTGCAAATTCGCCGAAACAACCCAATTCCGACGAACCCTACCTTCTTTCGGTTCTTATAAGCTCCTTCAGAGCCTATTGCTGCGATCCAACCCCCAATGCCTACCACTTCGTCCTCAAAACCTTTGTTCGAAGCTCACAGTTCCACTACATTGCCGCTGTTCTCGATCGTCTCGAACGCGTCGAGAAATTTGAAACCCCAGAGTACATATTTGTCGACCTCCTCAAAGTTTACGGACGAGTCAACCGAATTCAAGATGCCATCACTCTGTTCCGTAGGATTCCCATGTTTAGGTGCGTTCCTTCTGCGCTCTCACTCAACTCTCTACTTTTCCTGCTCTGTAGAAATGGCGAAGGTCTTCGAATAGTTCCTGAGATCATATTGAGTAGCCAGACTATGGGTATTAGGCTTGAAGAGTCCACTTTTCGGATACTAATTACTGCGTTATGTAAAATTTATAAAGTTGGGCATGCAATGGAGCTTTTCAATTATATGATAACTGAAGGGTATGGTCTGAACCCTGGAATCTCCTCTTTGATATTGGCATCGCTATGTGAGCATAAGAAATCCACTGGTAATGTGGTTCTTACCTTTCTGGAACAAATGAGGCTAAAAGGATTCTGTCCCGGTGTTGTGGATTATTCTAATGTAATTAAGTTCTTGGTTAGGAGAGGGCTGAGTTCAGACGCTCTTGATCTGTTGAATAAAATGAAGGCCGATGGTTTCAAGCCTGACATTGTTTGTTATACTATGGTCTTGAATGGGGTGATTGCGGATGGGGATTATAAGATGGCAGATGAACTGTTTGATGAATTGCTTCTCTTTGGTTTAGTTCCTGATATTTATACATACAACGTGTACATACATGGATTATGCAAACAAGGCAATTGGGAAGCAGGGATTCAAATGATTTTGCCTATGGAGGAATTGGGGTGCAAACCTGATGTGATCACTTACAATATTCTCTTGGAATGTTTGTGTAAAATCGGTGAACTTGATGAGGCAAGGAAGCTTCGAGGTAACATGCAACTAAAGGGTCTGGCAAAAAACGTGCGGACTTTTACGATTATGATCAGTGGGTTGTTTAATAACGGTGATGTAATTGAAGCTTGTATCCTATTGGAGGAAATGCTAGTAAGTCGTTTCCCTCCTCAGATTTCAACTTTTGGTGAGATACTTTCTTGGCTGTGCAAAAGGGACATGGTAGGCAAAGCGCTTGAGCTGCTCACGTTAATGGTTGGCATGAACTTTTCCCCTGGTCCTAAGGCTTGGGAAACACTGCTCCTGAGCTCTGAAAGTGAATTAACTTCTGTTAAGAGCCTTGAAACTACTTTAGAAGATTTAGTAGGCATCTGA

Protein sequence

MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLLSVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLKVYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIRLEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELTSVKSLETTLEDLVGI
Homology
BLAST of CmoCh14G000230 vs. ExPASy Swiss-Prot
Match: Q8L6Y7 (Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g38420 PE=2 SV=2)

HSP 1 Score: 399.1 bits (1024), Expect = 7.5e-110
Identity = 207/449 (46.10%), Postives = 298/449 (66.37%), Query Frame = 0

Query: 9   RSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLLSVLISSFR 68
           R  +F+RK+RK P S FKTKW++   Q  A+  ++    S    +S+   ++  L+SSF+
Sbjct: 9   RMSNFMRKYRKIPHSSFKTKWNENLKQKYAMEELR----SNLLTDSENASVMRTLLSSFQ 68

Query: 69  AYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLKVYGRVNRI 128
            + C+PTP AY FV+KT  +SSQ   I++VL  LE  EKF+TPE IF D++  YG   RI
Sbjct: 69  LHNCEPTPQAYRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIAAYGFSGRI 128

Query: 129 QDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIRLEESTFRI 188
           ++AI +F +IP FRCVPSA +LN+LL +L R  + L +VPEI++ +  MG+RLEESTF I
Sbjct: 129 EEAIEVFFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACRMGVRLEESTFGI 188

Query: 189 LITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQMRL 248
           LI ALC+I +V  A EL  YM  +   ++P + S +L+S+C+HK S+   V+ +LE +R 
Sbjct: 189 LIDALCRIGEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDSSCFDVIGYLEDLRK 248

Query: 249 KGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYKM 308
             F PG+ DY+ V++FLV  G   + + +LN+MK D  +PD+VCYT+VL GVIAD DY  
Sbjct: 249 TRFSPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGVIADEDYPK 308

Query: 309 ADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLE 368
           AD+LFDELLL GL PD+YTYNVYI+GLCKQ + E  ++M+  M +LG +P+V+TYNIL++
Sbjct: 309 ADKLFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYNILIK 368

Query: 369 CLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFPP 428
            L K G+L  A+ L   M+  G+ +N  TF IMIS      +V+ A  LLEE        
Sbjct: 369 ALVKAGDLSRAKTLWKEMETNGVNRNSHTFDIMISAYIEVDEVVCAHGLLEEAFNMNVFV 428

Query: 429 QISTFGEILSWLCKRDMVGKALELLTLMV 458
           + S   E++S LC++ ++ +A+ELL  +V
Sbjct: 429 KSSRIEEVISRLCEKGLMDQAVELLAHLV 453

BLAST of CmoCh14G000230 vs. ExPASy Swiss-Prot
Match: Q3EDF8 (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.6e-41
Identity = 111/419 (26.49%), Postives = 201/419 (47.97%), Query Frame = 0

Query: 74  PTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYI-FVDLLKVYGRVNRIQDAI 133
           P    Y+ ++  + ++ + +   +VLDR+       +P+ + +  +L+      +++ A+
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS-----VSPDVVTYNTILRSLCDSGKLKQAM 229

Query: 134 TLFRRIPMFRCVPSALSLNSLLFLLCRN---GEGLRIVPEIILSSQTMGIRLEESTFRIL 193
            +  R+    C P  ++   L+   CR+   G  ++++ E+    +  G   +  T+ +L
Sbjct: 230 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM----RDRGCTPDVVTYNVL 289

Query: 194 ITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVV--LTFLEQMR 253
           +  +CK  ++  A++  N M + G   N    ++IL S+C    STG  +     L  M 
Sbjct: 290 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC----STGRWMDAEKLLADML 349

Query: 254 LKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYK 313
            KGF P VV ++ +I FL R+GL   A+D+L KM   G +P+ + Y  +L+G   +    
Sbjct: 350 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 409

Query: 314 MADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILL 373
            A E  + ++  G  PDI TYN  +  LCK G  E  ++++  +   GC P +ITYN ++
Sbjct: 410 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 469

Query: 374 ECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFP 433
           + L K G+  +A KL   M+ K L  +  T++ ++ GL   G V EA     E       
Sbjct: 470 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIR 529

Query: 434 PQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELTSVKSLE 487
           P   TF  I+  LCK     +A++ L  M+     P   ++  L+     E  + ++LE
Sbjct: 530 PNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575

BLAST of CmoCh14G000230 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-41
Identity = 102/402 (25.37%), Postives = 195/402 (48.51%), Query Frame = 0

Query: 74  PTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLKVYGRVNRIQDAIT 133
           P  + ++ ++K   R+ Q      +L+ +         E  F  +++ Y     +  A+ 
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSY-GLVPDEKTFTTVMQGYIEEGDLDGALR 246

Query: 134 LFRRIPMFRCVPSALSLNSLLFLLCRNG---EGLRIVPEIILSSQTMGIRLEESTFRILI 193
           +  ++  F C  S +S+N ++   C+ G   + L  + E+   S   G   ++ TF  L+
Sbjct: 247 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM---SNQDGFFPDQYTFNTLV 306

Query: 194 TALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQMRLKG 253
             LCK   V HA+E+ + M+ EGY  +    + +++ LC  K       +  L+QM  + 
Sbjct: 307 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC--KLGEVKEAVEVLDQMITRD 366

Query: 254 FCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYKMAD 313
             P  V Y+ +I  L +     +A +L   + + G  PD+  +  ++ G+    ++++A 
Sbjct: 367 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 426

Query: 314 ELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLECL 373
           ELF+E+   G  PD +TYN+ I  LC +G  +  + M+  ME  GC   VITYN L++  
Sbjct: 427 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 486

Query: 374 CKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFPPQI 433
           CK  +  EA ++   M++ G+++N  T+  +I GL  +  V +A  L+++M++    P  
Sbjct: 487 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 546

Query: 434 STFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLL 473
            T+  +L+  C+   + KA +++  M      P    + TL+
Sbjct: 547 YTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582

BLAST of CmoCh14G000230 vs. ExPASy Swiss-Prot
Match: Q9SXD8 (Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana OX=3702 GN=At1g62590 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.4e-41
Identity = 108/381 (28.35%), Postives = 187/381 (49.08%), Query Frame = 0

Query: 79  YHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLKVYGRVNRIQDAITLFRRI 138
           Y+ ++  F R SQ     A+L ++ ++  +E        LL  Y    RI DA+ L  ++
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 182

Query: 139 PMFRCVPSALSLNSL---LFLLCRNGEGLRIVPEIILSSQTMGIRLEESTFRILITALCK 198
                 P  ++  +L   LFL  +  E + +V  ++      G +    T+ +++  LCK
Sbjct: 183 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMV----QRGCQPNLVTYGVVVNGLCK 242

Query: 199 IYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQMRLKGFCPGV 258
                 A+ L N M       +  I + I+ SLC+++    +  L   ++M  KG  P V
Sbjct: 243 RGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV--DDALNLFKEMETKGIRPNV 302

Query: 259 VDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYKMADELFDE 318
           V YS++I  L   G  SDA  LL+ M      P++V +  +++  + +G +  A++L+D+
Sbjct: 303 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 362

Query: 319 LLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLECLCKIGE 378
           ++   + PDI+TYN  ++G C     +   QM   M    C PDV+TYN L++  CK   
Sbjct: 363 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 422

Query: 379 LDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFPPQISTFGE 438
           +++  +L   M  +GL  +  T+T +I GLF++GD   A  + ++M+    PP I T+  
Sbjct: 423 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 482

Query: 439 ILSWLCKRDMVGKALELLTLM 457
           +L  LC    + KALE+   M
Sbjct: 483 LLDGLCNNGKLEKALEVFDYM 496

BLAST of CmoCh14G000230 vs. ExPASy Swiss-Prot
Match: Q9SXD1 (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 1.7e-40
Identity = 98/346 (28.32%), Postives = 175/346 (50.58%), Query Frame = 0

Query: 127 RIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIRLEESTF 186
           ++ DA+ LF  +   R  PS +  + LL  + +  +   +V  +    Q +GI     T+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNK-FDVVISLGEQMQNLGIPHNHYTY 120

Query: 187 RILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQM 246
            ILI   C+  ++  A+ +   M+  GY  N    S +L   C  K+ +  V L  ++QM
Sbjct: 121 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL--VDQM 180

Query: 247 RLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDY 306
            + G+ P  V ++ +I  L     +S+A+ L+++M A G +PD+V Y +V+NG+   GD 
Sbjct: 181 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 240

Query: 307 KMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNIL 366
            +A  L +++    L P +  YN  I GLCK  + +  + +   ME  G +P+V+TY+ L
Sbjct: 241 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 300

Query: 367 LECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRF 426
           + CLC  G   +A +L  +M  + +  +V TF+ +I      G ++EA  L +EM+    
Sbjct: 301 ISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 360

Query: 427 PPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLL 473
            P I T+  +++  C  D + +A ++   MV  +  P    + TL+
Sbjct: 361 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403

BLAST of CmoCh14G000230 vs. ExPASy TrEMBL
Match: A0A6J1F5E3 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111442310 PE=4 SV=1)

HSP 1 Score: 995.3 bits (2572), Expect = 8.8e-287
Identity = 495/495 (100.00%), Postives = 495/495 (100.00%), Query Frame = 0

Query: 1   MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60
           MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL
Sbjct: 1   MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60

Query: 61  SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK 120
           SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK
Sbjct: 61  SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK 120

Query: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180
           VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR
Sbjct: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180

Query: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVL 240
           LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVL
Sbjct: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVL 240

Query: 241 TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300
           TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDV 360
           IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDV
Sbjct: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDV 360

Query: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEE 420
           ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEE
Sbjct: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEE 420

Query: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480
           MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT
Sbjct: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480

Query: 481 SVKSLETTLEDLVGI 496
           SVKSLETTLEDLVGI
Sbjct: 481 SVKSLETTLEDLVGI 495

BLAST of CmoCh14G000230 vs. ExPASy TrEMBL
Match: A0A6J1IZC4 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111482051 PE=4 SV=1)

HSP 1 Score: 961.4 bits (2484), Expect = 1.4e-276
Identity = 482/495 (97.37%), Postives = 483/495 (97.58%), Query Frame = 0

Query: 1   MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60
           MESIRVVKRSDHFLRKHRK PFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL
Sbjct: 1   MESIRVVKRSDHFLRKHRKWPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60

Query: 61  SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK 120
           SVLISSFRAYCCDPTPNAYHFVLKT  RSSQFHYIAAVLDRLERVEKFETPE IFVDLLK
Sbjct: 61  SVLISSFRAYCCDPTPNAYHFVLKTLARSSQFHYIAAVLDRLERVEKFETPESIFVDLLK 120

Query: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180
           VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR
Sbjct: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180

Query: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVL 240
           LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGI SLILASLCEHKKSTGNVVL
Sbjct: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGICSLILASLCEHKKSTGNVVL 240

Query: 241 TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300
            FLEQMRLKGFCP VVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 IFLEQMRLKGFCPLVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDV 360
           IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMIL MEELGCKPDV
Sbjct: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILHMEELGCKPDV 360

Query: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEE 420
           ITYNILLECLCKIGELDEARKLRGNMQLKGLA NVRTF IMISGLF+NGDVIEACILLEE
Sbjct: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLANNVRTFRIMISGLFHNGDVIEACILLEE 420

Query: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480
           MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT
Sbjct: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480

Query: 481 SVKSLETTLEDLVGI 496
            VKSLETTLEDL GI
Sbjct: 481 PVKSLETTLEDLGGI 495

BLAST of CmoCh14G000230 vs. ExPASy TrEMBL
Match: A0A6J1DU83 (pentatricopeptide repeat-containing protein At2g38420, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024060 PE=4 SV=1)

HSP 1 Score: 824.3 bits (2128), Expect = 2.7e-235
Identity = 407/495 (82.22%), Postives = 445/495 (89.90%), Query Frame = 0

Query: 1   MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60
           M S  VVKRS++FLRKHRK PFSP+KTKWHQTF+QDEALR +KQAANSP+Q NSD+PYLL
Sbjct: 1   MASFSVVKRSNNFLRKHRKWPFSPYKTKWHQTFDQDEALRILKQAANSPEQSNSDQPYLL 60

Query: 61  SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK 120
           S L+SSF+AYCC PTPNAYHFVLKT  R+SQFH+I  VLDRLERVEKFETPEYIF DL+K
Sbjct: 61  SALVSSFKAYCCHPTPNAYHFVLKTLARTSQFHHIPLVLDRLERVEKFETPEYIFADLIK 120

Query: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180
            YGR+NRIQDAIT+FRRIPMFRCVPS LSLN LLFLLC+NGEG+R+VPEIIL+SQ MGIR
Sbjct: 121 FYGRMNRIQDAITIFRRIPMFRCVPSTLSLNPLLFLLCKNGEGIRMVPEIILNSQAMGIR 180

Query: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVL 240
           LEESTFRILITALCKI +VGHAME+FN MITEGYGLNPGI S IL+SLCE K+S+ + VL
Sbjct: 181 LEESTFRILITALCKINRVGHAMEIFNNMITEGYGLNPGICSFILSSLCEQKRSSSSEVL 240

Query: 241 TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300
           +FLEQMR KGFCP VVDYSN+IKF VRRG+SSDALDLLNKMKADGFKPDIV YTMVLNGV
Sbjct: 241 SFLEQMRQKGFCPCVVDYSNIIKFFVRRGMSSDALDLLNKMKADGFKPDIVSYTMVLNGV 300

Query: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDV 360
           I DGDYKMADELFDELLLFGL+PDIYTYNVYIHGLCKQG+  AGIQMI  MEELGCKP+V
Sbjct: 301 IGDGDYKMADELFDELLLFGLIPDIYTYNVYIHGLCKQGDPGAGIQMISRMEELGCKPNV 360

Query: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEE 420
           ITYNILLE  CK  +LDEARKLR  MQLKGLA+N+ TF IMI+GLFNNG+VIEACI+LEE
Sbjct: 361 ITYNILLETFCKTRKLDEARKLRSEMQLKGLAENLLTFRIMINGLFNNGEVIEACIILEE 420

Query: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480
           ML   FPPQISTFGEILSWLCKR MVGKALELLTLMVG NFSPG KAWE LLLSS +ELT
Sbjct: 421 MLGGCFPPQISTFGEILSWLCKRGMVGKALELLTLMVGKNFSPGAKAWEILLLSSGNELT 480

Query: 481 SVKSLETTLEDLVGI 496
           SVKSLETTL DLVG+
Sbjct: 481 SVKSLETTLGDLVGV 495

BLAST of CmoCh14G000230 vs. ExPASy TrEMBL
Match: A0A0A0LA35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730720 PE=4 SV=1)

HSP 1 Score: 775.8 bits (2002), Expect = 1.1e-220
Identity = 388/493 (78.70%), Postives = 433/493 (87.83%), Query Frame = 0

Query: 3   SIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLLSV 62
           S  VVK+S++FLRKHRK P S  KTKWHQTF+QDEALR +KQAAN P QP+     LLS 
Sbjct: 4   SFSVVKKSNNFLRKHRKWPLSSHKTKWHQTFDQDEALRILKQAAN-PDQPH----LLLSA 63

Query: 63  LISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLKVY 122
           L++SF AY C PTPNAY+FVLKT  R+SQFH+I  VL RL+ +E F+TPEYIFVDL+K+Y
Sbjct: 64  LVTSFTAYSCHPTPNAYYFVLKTLARTSQFHHIPPVLHRLQFLENFQTPEYIFVDLIKLY 123

Query: 123 GRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIRLE 182
           GR+NRIQDA+TLFRRIPMFRCVPS LSLNSLL  L RN +GL I+P+IIL+S +MGIRLE
Sbjct: 124 GRMNRIQDAVTLFRRIPMFRCVPSTLSLNSLLSQLSRNAQGLPIIPDIILNSHSMGIRLE 183

Query: 183 ESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTF 242
            STF+ILITALCK+ KVGHAMELFNYMITEGYGLNP I SLILASLC+ KKS+G+VVL F
Sbjct: 184 HSTFQILITALCKVNKVGHAMELFNYMITEGYGLNPQICSLILASLCQQKKSSGDVVLGF 243

Query: 243 LEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIA 302
           LE+MR KGFCP VVDYSNVIKF V RG+ SDA+DLLNKMKADGFKPDIVCYTMVLNGVIA
Sbjct: 244 LEEMRQKGFCPAVVDYSNVIKFFVTRGMGSDAVDLLNKMKADGFKPDIVCYTMVLNGVIA 303

Query: 303 DGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVIT 362
           DGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQG+  AG+QMI  ME LGC+P+VIT
Sbjct: 304 DGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGDSVAGLQMIPHMEALGCQPNVIT 363

Query: 363 YNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEML 422
           YN++L+ LCK GELDEARKLR  MQLKGLA+N+RTF IMI GLF+NG+VIEAC+LLEEML
Sbjct: 364 YNVILKSLCKTGELDEARKLRSKMQLKGLAENLRTFRIMIDGLFHNGEVIEACVLLEEML 423

Query: 423 VSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELTSV 482
            SRFPPQISTF EILSWLCKR MVGKA+ELL LMVG NFSPGPKAWE LLLSSESELTSV
Sbjct: 424 GSRFPPQISTFSEILSWLCKRHMVGKAVELLALMVGKNFSPGPKAWEILLLSSESELTSV 483

Query: 483 KSLETTLEDLVGI 496
           KSLETTL+DLVGI
Sbjct: 484 KSLETTLKDLVGI 491

BLAST of CmoCh14G000230 vs. ExPASy TrEMBL
Match: A0A5A7TL23 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005720 PE=4 SV=1)

HSP 1 Score: 770.4 bits (1988), Expect = 4.6e-219
Identity = 389/495 (78.59%), Postives = 432/495 (87.27%), Query Frame = 0

Query: 1   MESIRVVKRSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLL 60
           M S  VVK S++FLRKHRK PFS  KT WHQTF+QDEALR +KQ+ANS  QP+     LL
Sbjct: 1   MGSFSVVKNSNNFLRKHRKWPFSSHKTTWHQTFDQDEALRILKQSANS-HQPH----LLL 60

Query: 61  SVLISSFRAYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLK 120
           S LI+SF +Y C PTPNAY+FVLKT  R+SQFH+I  VL RL+ VEKF+TPEYIFVDL+K
Sbjct: 61  STLITSFTSYSCHPTPNAYYFVLKTLARTSQFHHIPPVLHRLQFVEKFQTPEYIFVDLIK 120

Query: 121 VYGRVNRIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIR 180
           +YGR+NRIQDA+TLFRRIPMFRC PS LSLNSLL LL RN +GL ++P+I+L+S +MGIR
Sbjct: 121 LYGRMNRIQDAVTLFRRIPMFRCFPSTLSLNSLLSLLSRNTQGLPMIPDILLNSHSMGIR 180

Query: 181 LEESTFRILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVL 240
           LE STFRILITALCK+ KVGHAME+FNYMITEGYGLNP I SLIL SLC+ K S+G+VVL
Sbjct: 181 LEHSTFRILITALCKVNKVGHAMEIFNYMITEGYGLNPQICSLILGSLCQQKNSSGDVVL 240

Query: 241 TFLEQMRLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGV 300
           +FLE+ R KGFCP VVDYSNVIKF V RG+SSDA+DLLNKMKADGFKPDIVCYTMVLNGV
Sbjct: 241 SFLEETRQKGFCPAVVDYSNVIKFFVTRGMSSDAIDLLNKMKADGFKPDIVCYTMVLNGV 300

Query: 301 IADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDV 360
           IADGDY+MADELFDELLLFGLVPDIYTYNVYIHGLCKQGN  AG+QMI  ME LGCKP+V
Sbjct: 301 IADGDYQMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNSAAGLQMISHMEALGCKPNV 360

Query: 361 ITYNILLECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEE 420
           ITYNILL+ LC  GELDEARKLR  MQLKGLA+N+RTF IMI GLF+NG+VIEAC+LLEE
Sbjct: 361 ITYNILLKSLCITGELDEARKLRSKMQLKGLAENLRTFRIMIDGLFHNGEVIEACVLLEE 420

Query: 421 MLVSRFPPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELT 480
           ML SRFPPQISTF EILS LCKR MVGKALELLTLMVG NFSPGPKAWE LLLSSESELT
Sbjct: 421 MLRSRFPPQISTFSEILSRLCKRHMVGKALELLTLMVGKNFSPGPKAWEILLLSSESELT 480

Query: 481 SVKSLETTLEDLVGI 496
           SVKSLETTL+DLVGI
Sbjct: 481 SVKSLETTLKDLVGI 490

BLAST of CmoCh14G000230 vs. TAIR 10
Match: AT2G38420.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 399.1 bits (1024), Expect = 5.4e-111
Identity = 207/449 (46.10%), Postives = 298/449 (66.37%), Query Frame = 0

Query: 9   RSDHFLRKHRKCPFSPFKTKWHQTFNQDEALRAIKQAANSPKQPNSDEPYLLSVLISSFR 68
           R  +F+RK+RK P S FKTKW++   Q  A+  ++    S    +S+   ++  L+SSF+
Sbjct: 9   RMSNFMRKYRKIPHSSFKTKWNENLKQKYAMEELR----SNLLTDSENASVMRTLLSSFQ 68

Query: 69  AYCCDPTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLKVYGRVNRI 128
            + C+PTP AY FV+KT  +SSQ   I++VL  LE  EKF+TPE IF D++  YG   RI
Sbjct: 69  LHNCEPTPQAYRFVIKTLAKSSQLENISSVLYHLEVSEKFDTPESIFRDVIAAYGFSGRI 128

Query: 129 QDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIRLEESTFRI 188
           ++AI +F +IP FRCVPSA +LN+LL +L R  + L +VPEI++ +  MG+RLEESTF I
Sbjct: 129 EEAIEVFFKIPNFRCVPSAYTLNALLLVLVRKRQSLELVPEILVKACRMGVRLEESTFGI 188

Query: 189 LITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQMRL 248
           LI ALC+I +V  A EL  YM  +   ++P + S +L+S+C+HK S+   V+ +LE +R 
Sbjct: 189 LIDALCRIGEVDCATELVRYMSQDSVIVDPRLYSRLLSSVCKHKDSSCFDVIGYLEDLRK 248

Query: 249 KGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYKM 308
             F PG+ DY+ V++FLV  G   + + +LN+MK D  +PD+VCYT+VL GVIAD DY  
Sbjct: 249 TRFSPGLRDYTVVMRFLVEGGRGKEVVSVLNQMKCDRVEPDLVCYTIVLQGVIADEDYPK 308

Query: 309 ADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLE 368
           AD+LFDELLL GL PD+YTYNVYI+GLCKQ + E  ++M+  M +LG +P+V+TYNIL++
Sbjct: 309 ADKLFDELLLLGLAPDVYTYNVYINGLCKQNDIEGALKMMSSMNKLGSEPNVVTYNILIK 368

Query: 369 CLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFPP 428
            L K G+L  A+ L   M+  G+ +N  TF IMIS      +V+ A  LLEE        
Sbjct: 369 ALVKAGDLSRAKTLWKEMETNGVNRNSHTFDIMISAYIEVDEVVCAHGLLEEAFNMNVFV 428

Query: 429 QISTFGEILSWLCKRDMVGKALELLTLMV 458
           + S   E++S LC++ ++ +A+ELL  +V
Sbjct: 429 KSSRIEEVISRLCEKGLMDQAVELLAHLV 453

BLAST of CmoCh14G000230 vs. TAIR 10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 1.8e-42
Identity = 111/419 (26.49%), Postives = 201/419 (47.97%), Query Frame = 0

Query: 74  PTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYI-FVDLLKVYGRVNRIQDAI 133
           P    Y+ ++  + ++ + +   +VLDR+       +P+ + +  +L+      +++ A+
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRMS-----VSPDVVTYNTILRSLCDSGKLKQAM 229

Query: 134 TLFRRIPMFRCVPSALSLNSLLFLLCRN---GEGLRIVPEIILSSQTMGIRLEESTFRIL 193
            +  R+    C P  ++   L+   CR+   G  ++++ E+    +  G   +  T+ +L
Sbjct: 230 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM----RDRGCTPDVVTYNVL 289

Query: 194 ITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVV--LTFLEQMR 253
           +  +CK  ++  A++  N M + G   N    ++IL S+C    STG  +     L  M 
Sbjct: 290 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC----STGRWMDAEKLLADML 349

Query: 254 LKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYK 313
            KGF P VV ++ +I FL R+GL   A+D+L KM   G +P+ + Y  +L+G   +    
Sbjct: 350 RKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 409

Query: 314 MADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILL 373
            A E  + ++  G  PDI TYN  +  LCK G  E  ++++  +   GC P +ITYN ++
Sbjct: 410 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 469

Query: 374 ECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFP 433
           + L K G+  +A KL   M+ K L  +  T++ ++ GL   G V EA     E       
Sbjct: 470 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIR 529

Query: 434 PQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLLLSSESELTSVKSLE 487
           P   TF  I+  LCK     +A++ L  M+     P   ++  L+     E  + ++LE
Sbjct: 530 PNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALE 575

BLAST of CmoCh14G000230 vs. TAIR 10
Match: AT1G62590.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-42
Identity = 108/381 (28.35%), Postives = 187/381 (49.08%), Query Frame = 0

Query: 79  YHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLKVYGRVNRIQDAITLFRRI 138
           Y+ ++  F R SQ     A+L ++ ++  +E        LL  Y    RI DA+ L  ++
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKL-GYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 182

Query: 139 PMFRCVPSALSLNSL---LFLLCRNGEGLRIVPEIILSSQTMGIRLEESTFRILITALCK 198
                 P  ++  +L   LFL  +  E + +V  ++      G +    T+ +++  LCK
Sbjct: 183 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMV----QRGCQPNLVTYGVVVNGLCK 242

Query: 199 IYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQMRLKGFCPGV 258
                 A+ L N M       +  I + I+ SLC+++    +  L   ++M  KG  P V
Sbjct: 243 RGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHV--DDALNLFKEMETKGIRPNV 302

Query: 259 VDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYKMADELFDE 318
           V YS++I  L   G  SDA  LL+ M      P++V +  +++  + +G +  A++L+D+
Sbjct: 303 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDD 362

Query: 319 LLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLECLCKIGE 378
           ++   + PDI+TYN  ++G C     +   QM   M    C PDV+TYN L++  CK   
Sbjct: 363 MIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKR 422

Query: 379 LDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFPPQISTFGE 438
           +++  +L   M  +GL  +  T+T +I GLF++GD   A  + ++M+    PP I T+  
Sbjct: 423 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSI 482

Query: 439 ILSWLCKRDMVGKALELLTLM 457
           +L  LC    + KALE+   M
Sbjct: 483 LLDGLCNNGKLEKALEVFDYM 496

BLAST of CmoCh14G000230 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-42
Identity = 102/402 (25.37%), Postives = 195/402 (48.51%), Query Frame = 0

Query: 74  PTPNAYHFVLKTFVRSSQFHYIAAVLDRLERVEKFETPEYIFVDLLKVYGRVNRIQDAIT 133
           P  + ++ ++K   R+ Q      +L+ +         E  F  +++ Y     +  A+ 
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSY-GLVPDEKTFTTVMQGYIEEGDLDGALR 246

Query: 134 LFRRIPMFRCVPSALSLNSLLFLLCRNG---EGLRIVPEIILSSQTMGIRLEESTFRILI 193
           +  ++  F C  S +S+N ++   C+ G   + L  + E+   S   G   ++ TF  L+
Sbjct: 247 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM---SNQDGFFPDQYTFNTLV 306

Query: 194 TALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQMRLKG 253
             LCK   V HA+E+ + M+ EGY  +    + +++ LC  K       +  L+QM  + 
Sbjct: 307 NGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLC--KLGEVKEAVEVLDQMITRD 366

Query: 254 FCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDYKMAD 313
             P  V Y+ +I  L +     +A +L   + + G  PD+  +  ++ G+    ++++A 
Sbjct: 367 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 426

Query: 314 ELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNILLECL 373
           ELF+E+   G  PD +TYN+ I  LC +G  +  + M+  ME  GC   VITYN L++  
Sbjct: 427 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 486

Query: 374 CKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRFPPQI 433
           CK  +  EA ++   M++ G+++N  T+  +I GL  +  V +A  L+++M++    P  
Sbjct: 487 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDK 546

Query: 434 STFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLL 473
            T+  +L+  C+   + KA +++  M      P    + TL+
Sbjct: 547 YTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582

BLAST of CmoCh14G000230 vs. TAIR 10
Match: AT1G62670.1 (rna processing factor 2 )

HSP 1 Score: 168.7 bits (426), Expect = 1.2e-41
Identity = 98/346 (28.32%), Postives = 175/346 (50.58%), Query Frame = 0

Query: 127 RIQDAITLFRRIPMFRCVPSALSLNSLLFLLCRNGEGLRIVPEIILSSQTMGIRLEESTF 186
           ++ DA+ LF  +   R  PS +  + LL  + +  +   +V  +    Q +GI     T+
Sbjct: 61  KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNK-FDVVISLGEQMQNLGIPHNHYTY 120

Query: 187 RILITALCKIYKVGHAMELFNYMITEGYGLNPGISSLILASLCEHKKSTGNVVLTFLEQM 246
            ILI   C+  ++  A+ +   M+  GY  N    S +L   C  K+ +  V L  ++QM
Sbjct: 121 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL--VDQM 180

Query: 247 RLKGFCPGVVDYSNVIKFLVRRGLSSDALDLLNKMKADGFKPDIVCYTMVLNGVIADGDY 306
            + G+ P  V ++ +I  L     +S+A+ L+++M A G +PD+V Y +V+NG+   GD 
Sbjct: 181 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 240

Query: 307 KMADELFDELLLFGLVPDIYTYNVYIHGLCKQGNWEAGIQMILPMEELGCKPDVITYNIL 366
            +A  L +++    L P +  YN  I GLCK  + +  + +   ME  G +P+V+TY+ L
Sbjct: 241 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 300

Query: 367 LECLCKIGELDEARKLRGNMQLKGLAKNVRTFTIMISGLFNNGDVIEACILLEEMLVSRF 426
           + CLC  G   +A +L  +M  + +  +V TF+ +I      G ++EA  L +EM+    
Sbjct: 301 ISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSI 360

Query: 427 PPQISTFGEILSWLCKRDMVGKALELLTLMVGMNFSPGPKAWETLL 473
            P I T+  +++  C  D + +A ++   MV  +  P    + TL+
Sbjct: 361 DPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8L6Y77.5e-11046.10Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidop... [more]
Q3EDF82.6e-4126.49Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX... [more]
Q9LFF14.4e-4125.37Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
Q9SXD84.4e-4128.35Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana OX... [more]
Q9SXD11.7e-4028.32Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1F5E38.8e-287100.00pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbit... [more]
A0A6J1IZC41.4e-27697.37pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Cucurbit... [more]
A0A6J1DU832.7e-23582.22pentatricopeptide repeat-containing protein At2g38420, mitochondrial isoform X1 ... [more]
A0A0A0LA351.1e-22078.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G730720 PE=4 SV=1[more]
A0A5A7TL234.6e-21978.59Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT2G38420.15.4e-11146.10Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G09900.11.8e-4226.49Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT1G62590.13.1e-4228.35pentatricopeptide (PPR) repeat-containing protein [more]
AT3G53700.13.1e-4225.37Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62670.11.2e-4128.32rna processing factor 2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 237..349
e-value: 8.6E-26
score: 93.1
coord: 350..491
e-value: 1.9E-27
score: 98.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 60..236
e-value: 6.2E-16
score: 60.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 185..213
e-value: 0.0037
score: 17.4
coord: 436..460
e-value: 0.67
score: 10.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 432..463
e-value: 0.0018
score: 16.3
coord: 397..428
e-value: 1.5E-4
score: 19.7
coord: 326..360
e-value: 1.2E-7
score: 29.4
coord: 291..325
e-value: 1.6E-4
score: 19.6
coord: 185..216
e-value: 9.0E-4
score: 17.3
coord: 361..392
e-value: 1.2E-6
score: 26.3
coord: 258..290
e-value: 7.1E-6
score: 23.9
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 389..421
e-value: 7.8E-7
score: 28.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 253..300
e-value: 2.4E-9
score: 37.2
coord: 323..372
e-value: 6.6E-15
score: 55.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 394..428
score: 10.39137
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..288
score: 9.865228
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 289..323
score: 9.667924
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 182..216
score: 8.714292
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 359..393
score: 11.542307
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 324..358
score: 12.232868
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 6..484
NoneNo IPR availablePANTHERPTHR47933:SF13PPR CONTAINING PLANT-LIKE PROTEINcoord: 6..484

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G000230.1CmoCh14G000230.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding