CmoCh13G004090 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G004090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNADH-u_ox-rdase domain-containing protein
LocationCmo_Chr13: 5160683 .. 5161496 (-)
RNA-Seq ExpressionCmoCh13G004090
SyntenyCmoCh13G004090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTCAGACGGCAGCGAGTCGGCAGGCGAATTATTACAGAGTCGCACAGCGAGAGAGAGAGAGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAAGACGTGATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGTAATTTCGATACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGTACCAATCTCTCTCTCTCTTACTTCTCTTCTTTTCTCCTATTCCGTTTCGTTGCTCGTCTGGAAATCTGTTCTCCTGTCTTTGCGTTTTAGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAAGATTGCGCGTTTTCGTGTTCTTTCTTTTCCTTTTTTTGCTTTCTTCTTCTGAAATTTAAGTTCCATTTGTGGACACTGTTACGATGTTCACCTTATTAAACTTGCAATCAGGTTGTGTCAATAAGCAAATTGAATCTTCACTTTTTTCTGAAGATTTTACACGATTTCTTTGTTTTTGATCAATTACAATGGTGCTCCATTAAGGGGTATTGGTAGACCTTTTATTGAAGAGGTCTCGATAGACTTAATTTTGTGTCACATTGTTATAACTCGTGTTGATTTCCTCAAGAGTTTCAGCATCTAATAGAAAATAG

mRNA sequence

GTCTCAGACGGCAGCGAGTCGGCAGGCGAATTATTACAGAGTCGCACAGCGAGAGAGAGAGAGAGAGAGCCGGCGGAGGTCAGTTTCAGCACCGGAGAAGACGTGATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGTAATTTCGATACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAAGATTGCGCGTTTTCGTGTTCTTTCTTTTCCTTTTTTTGCTTTCTTCTTCTGAAATTTAAGTTCCATTTGTGGACACTGTTACGATGTTCACCTTATTAAACTTGCAATCAGGTTGTGTCAATAAGCAAATTGAATCTTCACTTTTTTCTGAAGATTTTACACGATTTCTTTGTTTTTGATCAATTACAATGGTGCTCCATTAAGGGGTATTGGTAGACCTTTTATTGAAGAGGTCTCGATAGACTTAATTTTGTGTCACATTGTTATAACTCGTGTTGATTTCCTCAAGAGTTTCAGCATCTAATAGAAAATAG

Coding sequence (CDS)

ATGAACACCGACATTACAGCTTCGACTAAGCCAGAGTATCCAGTAATAGATCGGAATCCTCCATTTACCAAAGTCGTTGGTAATTTCGATACTCTCGATTACCTCCGTTTCGTCACCATTACCGGCGTTTCCGTCACCGTCGGTTATCTTTCCGGGATTAAGCCCGGAATTAGGGGTCCGTCAATGGTCACCGGTGGTCTAATTGGGCTGATGGGAGGCTTCATGTATGCTTATCAGAACTCGGCGGGTCGGATTATGGGATTCTTCCCCAATGAAGGCGAGGTAGCTCGTTATAAGAAATAA

Protein sequence

MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK
Homology
BLAST of CmoCh13G004090 vs. ExPASy TrEMBL
Match: A0A6J1EGY7 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=3662 GN=LOC111434210 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

BLAST of CmoCh13G004090 vs. ExPASy TrEMBL
Match: A0A6J1HSH8 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661 GN=LOC111466374 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

BLAST of CmoCh13G004090 vs. ExPASy TrEMBL
Match: A0A6J1CN33 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111012637 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

BLAST of CmoCh13G004090 vs. ExPASy TrEMBL
Match: A0A6J1EHK1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=3662 GN=LOC111432598 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

BLAST of CmoCh13G004090 vs. ExPASy TrEMBL
Match: A0A1S3CJL9 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103501718 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.5e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

BLAST of CmoCh13G004090 vs. NCBI nr
Match: XP_022927362.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_023520383.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.3 bits (521), Expect = 2.5e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 100

BLAST of CmoCh13G004090 vs. NCBI nr
Match: XP_022142552.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925305.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_022966760.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023001508.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita maxima] >XP_023541604.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita pepo subsp. pepo] >KAG6573532.1 hypothetical protein SDJN03_27419, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012647.1 hypothetical protein SDJN02_25399 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 4.2e-49
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPNEGEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYKK 100

BLAST of CmoCh13G004090 vs. NCBI nr
Match: XP_008463609.1 (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo] >XP_038894012.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Benincasa hispida])

HSP 1 Score: 203.4 bits (516), Expect = 9.3e-49
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

BLAST of CmoCh13G004090 vs. NCBI nr
Match: XP_011654950.1 (NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus] >XP_031745943.1 NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucumis sativus])

HSP 1 Score: 203.0 bits (515), Expect = 1.2e-48
Identity = 97/100 (97.00%), Postives = 100/100 (100.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPV+DRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVVDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVARYKK 100

BLAST of CmoCh13G004090 vs. NCBI nr
Match: KAG7019380.1 (hypothetical protein SDJN02_18341 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.6 bits (514), Expect = 1.6e-48
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNE EVARYKK
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEDEVARYKK 100

BLAST of CmoCh13G004090 vs. TAIR 10
Match: AT4G16450.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 181.0 bits (458), Expect = 4.6e-46
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

BLAST of CmoCh13G004090 vs. TAIR 10
Match: AT4G16450.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. )

HSP 1 Score: 181.0 bits (458), Expect = 4.6e-46
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFDTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60
           MNTDITA  K +YPV+DRNP FTKVVGNF TLDYLRF TITG+SVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRIMGFFPNEGEVARYKK 101
           SMVTGGLIGLMGGFMYAYQNSAGR+MGFFPN+GEVA Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQK 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EGY71.2e-49100.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=36... [more]
A0A6J1HSH82.0e-4999.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita maxima OX=3661... [more]
A0A6J1CN332.0e-4999.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Momordica charantia OX=3673 G... [more]
A0A6J1EHK12.0e-4999.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like OS=Cucurbita moschata OX=36... [more]
A0A1S3CJL94.5e-4998.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
XP_022927362.12.5e-49100.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Cucurbita moschata] >XP_02... [more]
XP_022142552.14.2e-4999.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Momordica charantia] >XP_022925... [more]
XP_008463609.19.3e-4998.00PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis melo] >XP_03... [more]
XP_011654950.11.2e-4897.00NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Cucumis sativus] >XP_031745943.... [more]
KAG7019380.11.6e-4899.00hypothetical protein SDJN02_18341 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
AT4G16450.14.6e-4686.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores... [more]
AT4G16450.24.6e-4686.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photores... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalPFAMPF10785NADH-u_ox-rdasecoord: 11..89
e-value: 5.7E-20
score: 71.8
NoneNo IPR availablePANTHERPTHR34062OXIDOREDUCTASE 21 KDA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G04750)-RELATEDcoord: 1..99
NoneNo IPR availablePANTHERPTHR34062:SF2NADH-UBIQUINONE OXIDOREDUCTASE 20.9 KDA SUBUNIT-LIKEcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G004090.1CmoCh13G004090.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005747 mitochondrial respiratory chain complex I