CmoCh13G003060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G003060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit beta'
Location	Cmo_Chr13: 3317955 .. 3318310 (+)
RNA-Seq Expression	CmoCh13G003060
Synteny	CmoCh13G003060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGTGTTAGGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGTAATTGTAATTGAAGGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA

mRNA sequence

ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA

Coding sequence (CDS)

ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA

Protein sequence

MNSREELSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGKETLLGKRVDYSGRSVIVVGPLLSLHGDCIAIELFQTFSFKHRSC

Homology

[Close]

BLAST of CmoCh13G003060 vs. ExPASy Swiss-Prot
Match: P11705 (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-25
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           LS + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 409

[Close]

BLAST of CmoCh13G003060 vs. ExPASy Swiss-Prot
Match: A6MMJ8 (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes OX=145284 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-25
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL+DNGIR QPM+DGHNK YKSF D  E GK    +
Sbjct: 313 LATSRSMPGELVMCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDVIE-GKEGRFR 372

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 373 ETLLGKRVDYSGRSVIVVGPSLSLH-QCGLPREIAIELFQTF 412

[Close]

BLAST of CmoCh13G003060 vs. ExPASy Swiss-Prot
Match: A6MMT5 (DNA-directed RNA polymerase subunit beta' OS=Illicium oligandrum OX=145286 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-25
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 5   EELSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDF 64
           + L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK   
Sbjct: 315 DPLTTSRSTPGELVLCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGR 374

Query: 65  GKETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
            +ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 375 FRETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 416

[Close]

BLAST of CmoCh13G003060 vs. ExPASy Swiss-Prot
Match: A9L987 (DNA-directed RNA polymerase subunit beta' OS=Lemna minor OX=4472 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-25
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 317 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 376

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 377 ETLLGKRVDYSGRSVIVVGPSLSLH-QCGLPREIAIELFQTF 416

[Close]

BLAST of CmoCh13G003060 vs. ExPASy Swiss-Prot
Match: Q6EW57 (DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba OX=34301 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-25
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-QCGLPREIAIELFQTF 409

[Close]

BLAST of CmoCh13G003060 vs. ExPASy TrEMBL
Match: A0A455KZB9 (DNA-directed RNA polymerase subunit (Fragment) OS=Megastylis gigas OX=152889 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ N + P  L++   KLV+EA+DTL+DNGIR QP+RDGHNK YKSF D  E GK    +
Sbjct: 166 LATNRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPVRDGHNKVYKSFSDVIE-GKEGRFR 225

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 226 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 265

[Close]

BLAST of CmoCh13G003060 vs. ExPASy TrEMBL
Match: A0A0U1VGQ9 (DNA-directed RNA polymerase subunit beta' OS=Nervilia aragoana OX=152892 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LATSRSTPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKAYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 409

[Close]

BLAST of CmoCh13G003060 vs. ExPASy TrEMBL
Match: A0A411HRS4 (DNA-directed RNA polymerase subunit beta' OS=Chenopodium ficifolium OX=887860 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 69/102 (67.65%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           LS + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPLLSLH-RCGLPREIAIELFQTF 409

[Close]

BLAST of CmoCh13G003060 vs. ExPASy TrEMBL
Match: A0A0D3M6I0 (DNA-directed RNA polymerase subunit beta' OS=Habenaria pantlingiana OX=1498489 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]

BLAST of CmoCh13G003060 vs. ExPASy TrEMBL
Match: A0A6G7L1K7 (DNA-directed RNA polymerase subunit beta' OS=Habenaria chejuensis OX=1499526 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 69/102 (67.65%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  LL+   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSTPGELLMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]

BLAST of CmoCh13G003060 vs. NCBI nr
Match: AXO65948.1 (RpoC1, partial [Megastylis gigas])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ N + P  L++   KLV+EA+DTL+DNGIR QP+RDGHNK YKSF D  E GK    +
Sbjct: 166 LATNRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPVRDGHNKVYKSFSDVIE-GKEGRFR 225

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 226 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 265

[Close]

BLAST of CmoCh13G003060 vs. NCBI nr
Match: YP_009757597.1 (RNA polymerase beta' subunit [Sauroglossum elatum] >QIM61002.1 RNA polymerase beta' subunit [Sauroglossum elatum])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 69/102 (67.65%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L+I   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LATSRSTPGELVICQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 409

[Close]

BLAST of CmoCh13G003060 vs. NCBI nr
Match: ADE74776.1 (RNA polymerase beta' chain, partial [Habenaria hexaptera])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 166 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 225

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 226 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 265

[Close]

BLAST of CmoCh13G003060 vs. NCBI nr
Match: YP_009566814.1 (RpoC1 [Chenopodium ficifolium] >QBB73349.1 RpoC1 [Chenopodium ficifolium])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 69/102 (67.65%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           LS + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPLLSLH-RCGLPREIAIELFQTF 409

[Close]

BLAST of CmoCh13G003060 vs. NCBI nr
Match: YP_009749431.1 (RNA polymerase beta' subunit [Habenaria chejuensis] >QII91518.1 RNA polymerase beta' subunit [Habenaria chejuensis])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 69/102 (67.65%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  LL+   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSTPGELLMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]

BLAST of CmoCh13G003060 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 114.8 bits (286), Expect = 4.5e-26
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 409

The following BLAST results are available for this feature:

BLAST of CmoCh13G003060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11705	2.8e-25	66.67	DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 ...	[more]
A6MMJ8	3.7e-25	64.71	DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes OX=145284 GN...	[more]
A6MMT5	3.7e-25	64.42	DNA-directed RNA polymerase subunit beta' OS=Illicium oligandrum OX=145286 GN=rp...	[more]
A9L987	3.7e-25	65.69	DNA-directed RNA polymerase subunit beta' OS=Lemna minor OX=4472 GN=rpoC1 PE=3 S...	[more]
Q6EW57	3.7e-25	65.69	DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba OX=34301 GN=rpoC1 PE=...	[more]

BLAST of CmoCh13G003060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A455KZB9	2.1e-23	66.67	DNA-directed RNA polymerase subunit (Fragment) OS=Megastylis gigas OX=152889 GN=...	[more]
A0A0U1VGQ9	2.1e-23	66.67	DNA-directed RNA polymerase subunit beta' OS=Nervilia aragoana OX=152892 GN=rpoC...	[more]
A0A411HRS4	2.1e-23	67.65	DNA-directed RNA polymerase subunit beta' OS=Chenopodium ficifolium OX=887860 GN...	[more]
A0A0D3M6I0	2.1e-23	66.67	DNA-directed RNA polymerase subunit beta' OS=Habenaria pantlingiana OX=1498489 G...	[more]
A0A6G7L1K7	2.1e-23	67.65	DNA-directed RNA polymerase subunit beta' OS=Habenaria chejuensis OX=1499526 GN=...	[more]

BLAST of CmoCh13G003060 vs. NCBI nr


Match Name	E-value	Identity	Description
AXO65948.1	4.4e-23	66.67	RpoC1, partial [Megastylis gigas]	[more]
YP_009757597.1	4.4e-23	67.65	RNA polymerase beta' subunit [Sauroglossum elatum] >QIM61002.1 RNA polymerase be...	[more]
ADE74776.1	4.4e-23	66.67	RNA polymerase beta' chain, partial [Habenaria hexaptera]	[more]
YP_009566814.1	4.4e-23	67.65	RpoC1 [Chenopodium ficifolium] >QBB73349.1 RpoC1 [Chenopodium ficifolium]	[more]
YP_009749431.1	4.4e-23	67.65	RNA polymerase beta' subunit [Habenaria chejuensis] >QII91518.1 RNA polymerase b...	[more]

BLAST of CmoCh13G003060 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	4.5e-26	65.69	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.40.20		coord: 59..108 e-value: 4.7E-5 score: 25.8
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 10..102
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 10..102
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 13..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003060.1	CmoCh13G003060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009536	plastid
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016779	nucleotidyltransferase activity