CmoCh13G003040 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G003040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit beta
LocationCmo_Chr13: 3305185 .. 3315887 (+)
RNA-Seq ExpressionCmoCh13G003040
SyntenyCmoCh13G003040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCATGATCTTCCCTACCTAACCTGGCTGCACCACATGCAGCTCAGCAAAATGTACAGGGTGAGGGGAGTTCTGCCCCGGGGATGACCCTTCGAGCATTACAGGAAGCATCGAATGCTCTTGTTACAGAATAGGCAGGAGGGTAGGTTTGGATTGGACAATAAGGGCTTTGCTAGACGGTCTTGTCTTTCTTTCTCTTTGTTCAAATCTAGTGCTGGCTGGCGTGGAAGGTTTAGCCCAGTGAATCAAGCAATTGAATCAGGAAGCGCTGCTCCTCTACTCAGGATAAGGGCTGAAGATGTAGTTTCTGTTTGCAAGCGGGAAGCGAGCAATGCCTCTCTTGTGGCTTGTTGCTTTGTGCTGCGATTATGAAAGGGATGGGCCAAGCAGCAAATTAGCCATTGATTTTCTAATATGGTGTCTAGTTAATGGATTCTGCGTCCGCGTATAAAAGACCAGCAGCAAGCAGCTCCATCATCCACATCTCATATGCTAGGGGGTCCCATTCGTCATGTGCCGGATCCCATTCCCAGTAAGTTGAGCAGCCTTGAACCCATACCCTTGATTCCCGCCTTGAGCCTCAGCCCGAAGGCCCAGAGGTTGCTGTTTGGTCTAGATAAGCAGGCATGGACAGGCTCCTCGAGCGGATACCATTCCAATGGGGAAATCTTCCTATTACCGGTGGAGAACTCAAAGGATCCAAACTCCTTAGGTGATATGAACCAAAAGACATCAACCCTACAATATCCTTCAATGGAGATGTGAAGAAAAGGTTGTCAAAATTATCAAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTAGGTTATAATTTAGAGTAATTTAGAGTTATTGTATTTCATTAATGTAGTTTAAGACTTTTAATTTACTTTAGGTTACAATTACATAATGGTTAATTATTTCCATTAAGTATGAATGTTACAACTTTTGGAATACCTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATTTGTAAGAAAGACTTGGAAAATATAATAAAGAAGCATTTGTGCTTTTCTTTAGCCGATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGTGATATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAGGACTTTTGTGCCCAAAAATCTTTATAGCATTCGCATATCAAATCAAGAAGATAATGGAGTGGCTGATATTGGAAAATAATTAGAAGACTTGCCTTTGGTAGTTGAATTACCAATTAAGGAAATTATTAATGCTTTATTTGCTTCCTTTTATATTTAATAGCATTTATTAATAGTTTGTATGAATTGCCTTATATTCTTCAATTTGTATTTAATAGCATTTATTAGTGATTGGTGGCTGAACCATATTATGTTAGGGTTACCTTTTAGACCTATTTAAAGGCATGTAATACTCATGTTTGAGGGATTTTAGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAATCTTGCTTTAGGTTTGATGTTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGTCATTCATCTTCTAACCAGCTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTCCTCTGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCTTTTATCATTTGGTATCAGAGCATTTGGTCGACGTTCTTTGGCCGCTCTAGAGGTGAAATATCTTTACTATTATTTTTTTTGTATCAATCTTGTTTCTCTCTCAGATTATAAAAAAAAAAAAAAAAAGTCAGCCTTTACATTCTTGACCTAGTACCAAAAGCCTACCTTTGAGTGTTAAACACGAGTGTCCCTGAGTGAAATTTTTGTGAGAAGTGTGGTGAGGTCCCTTGATAACAATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAGGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTATGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGGAACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTTGCTATTGCCGAATTTACCAATCATGCTAGTGATTGGTACCAACATCTCAAATCCGAGAGAAGAAGAAAAGAGGAGAATCCAATAGAGACATGGGAAGAACTTAAAGAAGTCATGAGAAAAAGGTATGCTCCAAAACATTATGAAAGAAATTTGAAAACTAAATTGCAAGGTTTGAGGCAAGGAACAAAAAGTGTGGCGGAATATTATCAAGAGATGGAAACTATGATGAAAAGAGCAAAGGTTAGAGAAGAAGAAGAAGATACCATGTCTAGATTTCTTGGAGGTTTGAATCGAGAAATTGCTCATCTTGTTGACAGAAATCCACCACCATATCTGGAAGATATGTATCATTATGCTCTCAAAATTGAAGACCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAGCATCTTTTCAAATTCTAATACTTGGAACAAGGATAGTTTTATGAATAAAAATGATTCGATGTCACCAAAAGGAAAGTTTGTGACTGCTAAAAGAGTGGAGGCTGAGAGTTTCAATGGTAAAATGAATGAAGCTTCAAAGACGGTAAAAGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGATTTGGACACATGAGCAAAGAGTGTGTTAATGAAAAAGTTATGGTGATAAGGAATGGTATACTTGATTCAGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCCGCATATGATGATGAGTATGTTGAAGAAGGTAATTCCATATCTTTGATCACAAGAAAGGTACTCAATGTTCAAATCAAGGGAGAGAAATTTGAATATCAAAGGGAAAACTTGTTCCACACAAGATGTTTGATCAAAGCAAACCCATGCAGCTTGCTGATTGATGATAGTGGAAGTTACACAAATGTGGTAAGCAGTTTCCTTGTAAAAAGACTTCAACTTTCTGTCTATCCACATCCAAAACCATACAAACTTCATTGGTTAACAAACAAAGAAGAAATTAAGGTGAATTCCCAAGCTCTTATTTCTTTTACTCTTGGAAGATATAAAGATGAAGTTCTTTATGATGTCGTACCAATGCATGCGGGGGACATCTTTATCGGCCGACCTTGGCAATATGATAGAAAGGTAACATTTGATGGTTTCATGAACAAGTATACTTTTACTTTGTGTGGGAAGAAATTTACTTTACTTCCATTGTCTCCATATGAAGTACATTGTGACCAATTGAAATTAGAGAAAAAAAGAACAGAATCTGAAGAACAACAGTGGAGAGAAGAAACTAAGGTAAAGGTGAGAAATAAAGTGAGAAAAAAAAAAAATTCAGTTCTTGTCCGGAAAGAACGATGAATTTGATTTGAGGACAAATCCTTTTAAAGAAAGGGGGGATGATATGAATCCAACAACTGATCACGTGCATGTACCCGAAGGACCGATTACAAGAAGCAAGGTTAAGAAGATTCAAGAGGCCTATACATTGCATCTTCAAAAGCTAGCTAGTGTACCGGTTGAAACAAGGACTTTTGTGCCCAAAAATCTTTATAGCATTCGCATATCAAATCAAGAAGATAATGGAGTGGCTGATATTGGAAAATAATTAGAAGACTTGCCTTTGGTAGTTGAATTACCAATTAAGGAAATTATTAATGCTTTATTTGCTTCCTTTTATATTTAATAGCATTTATTAATAGTTTGTATGAATTGCCTTATATTCTTCAATTTGTATTTAATAGCATTTATTAGTGATTGGTGGCTGAACCATATTATGTTAGGGTTACCTTTTAGACCTATTTAAAGGCATGTAATACTCATGTTTGAGGGATTTTAGTTGAATACAGAAAAAACCTTTGTGTTTTCTTGATACCCTTTTGGTGTTATTCTTTTTCAAATCTTGCTTTAGGTTTGATGTTTAAACCGATTCATTGAATTAGTTTTGATCAAGCTAATTCTGGAGTGAATTGTCTTGGTATCTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAGTCATTCATCTTCTAACCAGCTCTTGGTTGGAATCAATCCGTTAAGTTAGCTTCCTCTGTGAGCGTTTTGCAAGGATTCTAGAAGGACCTCTAGCTTTGCAAATTCCAGCATTGTAGGCGCTTATCAGGTTGCATGTAGAATCATTCAAGCTTGACATGATCAATCTTGCTTGTAGAGTGATTCGAATCTCAAACAAGTGTTATTGCATTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATATTCTTGCCTTGAGACATTCGATCAACAAGGTAATCCGAATCTTATTCCCCTTGTAATTGATTCCTTATCTTATCATTTGGTATCAGAGCTTCAGGCTCAAGATCGGATATATGTTTCCTTTGCGTTTCTTCTCAATTTGATTTTTATTTATTTTCATCTTTTTAGTTTTTAATCGACCCAAAGTTCAAAATTCAATCTTTGCTCTATTTAAAATTTGAGAGGTGAGAATGAGAACTTCATTTGTGTAAATGAGTGCAAACAGAGTGGCCTAAAATTCCTTGAGTGTATACACGTGAGGTCCTTTGTATTTCCATAACTTATTTTTTGCAGCAAAGTTTCACAATTAGATTCGAGGACGGATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAAAGACATCAACCTTACAATATCCTTCAATGGAGATGTGAAGAAAAGGTTGTCAAAATTATTAAAAGATGTTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTGATTGTTATAAATTTTGGGTGGGTTATAATTTAGAGTAATTTAGAGTTATTGTATTTCATTAATGTAGTTTAAAACTTTTAATTTACTTTAGGTTACAATTACATAATGGTTAATTATTGCCATTAAGTATGAATGTTACAACTTTTGGAATACCTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATTTGTAAGAAAGACTTGGAAAATATAATAAAGAAGCATTTGTGCTTTTCTTTAGCCGATGGCTAAGTTTCTTTGCAATTCTACGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCAATCAAGTGTTCTTGTCTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGATATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAAGTGTTCTTGGTTTGAGATATTCGATCAACAAGGTAATCCGAATCTTATTCCCCTTGTATTGATTCCTTATCTTATCATTAGGTCTTGTTTTGTAAGCTTGAAGCTTTTCAACCTATCGAGATTAACTTACAACTCCACTAACCTAAGCTTACCAGATCAAGTAGATCACTACCGAAACCCGTACCGGACACGCTTCTTTCTCGACTTCGCCTCGTTCTGCCAACGTCGACCCTTCCCGTACGAAGCCTTTCCCACCTTATCTTATTGGTCTTCTTTCCTCTGTCGCTGATAAATGTTGAACGTATAGCGCTCTTCTGCTGAGAAATGCCCTCCTTTTGTCTTCACCTTGTGGTCCCGAGACATATGGTTTTGGTACAGAAAAGAAATGTCACCAAGGGGCCGCCTTATCAGTAGATCTCCCTCCTCTCGTATCTCTAGTAAACAAACTTCGAGCTGCTGAACCGGGCATAGAACAAGGGTATATTGTTTTTCTGCTTGTTTTGAAAGCTTGAAACGACAGACAAATGGTGACTATGAGAGGGCTTGCTACTGAGCTTCTTGTGTTCATTCCATCTTTCTTGATTATGGGGTCCGCGCAACAAGAGCGCTTCCTCTTTTTCTTTGCCACCATGAGACCTTGCCTTATTTGGTTGGTAGTGTAGAGGTGGAATCAACGCAATTCGTACTGGTAGTAGTGAGATGTCGCCTTCACTGGGTTGGAATAGTAGGTCTGTCTCTCGAGCCTTGTTCTCCGCGGTCATTCTCACAGCCCTTGCCTTTCTCACTATCAAATTTACACCTGACTTGTTGAACCAAGCTAAGGTCACTAATGAATCTACATATCCTAGGGATGAGAAATTCTTCGTTGGTGTTAAGTTAACCATGAATGGACTCTAACTCTAATGGCTGAGCTAGGTATGTATGCTTACCAATCTTGTCCCGAGCGCGCGGGAGACTGCCTCCTGTACCGATGTTAATTGAATGAATGGACACCAGAACAAGTTCGTGCTCCGAATCTATAAAGAGCTCGTGCCTGAGTCCTTCCCCAAAAAGGATTGTTCCTTGTTGGTACGAGCTTTTCTTGTTCTCTTCTACCCTGGGATTGAATTGTTTTCCTAATGTTGTAAGGGACTCCCAAGCACATTCATTCTTTCTCTACCCTGTCTACTAAGAAAGAGAAGTTAGTGAGAAGATTCGCTTAATTGAATTGATCGTAGATGTATTGGGAATCTTCCTTGAATTGAGAGGAAGTAGGAGCATCGTGTTAAGACAAGGGCGGTGGGTAGGTAAAGACAGGGTGGGTTTACAATCAAAGCTCCAACTGTCTGTCATGCCGGGTAAACCACTAGGGTATGAATTTGGATCTAGGACCGGTAGCGGGCGAAATTACGTGCGTGAGAGGAAGTCTTGGTGGAGCCGAGGATGGAATAGCACAACTTAGTGACTAGGAGCATAGGGAGATCCCGTTGCGCCTTGTTTTTGTTTGACCGGCCTATCCTCTTTCAAGAAGCAAGCTCCCTCCGGTTGTCCAGTCCCTGGGCATCTCTCGGTTTTTGTGTTGGGAGATTAGGCGGCAGTTTCAAGACTTGAAAGCTTGACGAAGAAGCAAATCAAGCCCTAACTACTCTTTCAAATCAAGCCCTAACTACTCTTTCTTTGAGAAAAGGGCTTTTACTAGTCAAGTGGTAAGGTAGGGCGTATTCATTGAAGAAAACAGACTTTAGGAAAGGGGTTCAGGTAGCTCAGCTGGTTAGAGAAAAGGACTGAAAATCCTTGTGTCAGTGGTTCGAATCTACTTCTAAGCAAAGGGTCCAAAGGACACGTAGCCGGGACCTGATTTAGAAATTCAAATGAAAGAGGAAGCACAAAACAAGTAGATTTGATAAACAAAGCTGTAGATTACTCGGATTGGGTCTCGCGTCCCTGTGCCAAAATGGGCGAGTTTGGTTTGAGTGTTCATCGATTGGGTAGATCCATATGCTCCGGGGGGGTAAGACGAGGTGTAGCGTAGTCTGGTCAGCGCATCTATTTTGGATACAGNGGGCCATAGGTTCGAATCTTGTCACCTTGATAAAGAGGATGATCTCCTTTTCTATCACACGTAAAATTGTCTGTCATTCTTTTGTCTTTCCCCTAACTTTATCAATCATCGGAAGGGTTTTGGTTATCATATATCGAGATAATTATTATGAAAAAGCTTTCCACTGGTGTGACTTAGATACCCTTTCTTTCTTTGTGGTATCAGTCATGCTATTTGAATAGCCTGAAATCATCATAGCCTCTCCACCGGTTCCGAAGACTCCTTCGGCATCAATATGCTCCAATGAAAGAGATCAGACCACCCTTTCTTTCTTTGTGGTATCAATCATGCTATTTGAATAGCCTGAAATCATCATAGCCTCTCCACCGGTTCCGAAGACACCTTCGGCATCAATGTGCTCCAATGAAAGAGATCAGACCCTTTCCTTCACTAGAACCGGAGCGAGCTCTTTTCGCACGCAATCTCGAAGCCCAATTAGCTCATGGACTGTCTCCTCAACCCTGGCGAGTACGAGAGCTTGGTAAGAGAGAATGTCGAATGAGAAAGACATTTAATTACGGCAACTAACTAGATAGCGAACTTTTTGGTAGAAACTGAATGATCCCTTGGCTTGGGCAAGAAAAGGAAAGGGTAAGAGTGAGTACTTACTCTTATTCCGACGATAGGAAAGTTTGAGCTGAAAGATTGAATCTCATCGGGTAAGAAAGGCGGCTTAGCAGGGTTCTCCAAACGTATACTTATTAGGTTTCTCCAAACGTATAAACAAAAAGAGGAAGCAACCGGTCCTAAAGAGGATACCGATACGCATACATTCTCGCATGGAAGAACCTAGCTGAACCAGATCAAGGGTCCTAACCAAGTCCGGCTAACCTTCTTTGGCTGGCCCCCGCCCCTTGTAACGAGGTCAACCCGTACGTGCTCCTTTCGTTTAGCGAGATAGCTTACCAGCTCTTTCGGCTCCAGTAGTATGAAAAGCGGAATCCTCATCCTGAGTCGAGTCTGCATTGCCATACGAATCGACATCGGACAAACCAAGAACTCCTATTTTTTCTTTAACGAAAGCATATATAACAGTTTCGAGAAAACAAACCAACCTCTTTTAAAAAAGGAGTCACTCTGCCTTGATCACCGTGGACATACGCAGCTCCCACTTTACCTTCGCCTACTGGGAAAAGGAAAGTTCCCTCACGATAGGCCCTCTCAGCTCCCGAATGTCTTTCTATCAATTGAGAGAGGTACAGAATAGTACAACAAACCAACAAGACAAGAATGGACTCATAAGATGGGCGGAAAGCTATTTCATTTTGTTATCCACCAAGGGTTAGTGCACTTTGGTAGTTGCGAATGTTGCCGTAATCAATGTATTTCTCGTTTCGTGTTAGCTCCTCCAAGAGCTTCTTGGTCCGTAGTAGACGAAACCTTGGACTTCTATCGGACTTATTGCATTGCCTGGTGAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATTGAGCAACCTTTCTTTCCCTGCCTGGTATGCTTTCCCGCTTATCGCGCAACTAGCCAACTAGCCAAAGAGAGAGGGAGAGGGGTGAAAGAGCGAGACCGAGTGAAAGAGTGAAAGAAGGAATCTTTCAGATTTACTTACAGTTAAGTCGAATTGATTCTTCGATAGTCTTGACTTAATAATGGATTAATTACCTTTACTAGATTTGATCCAATAAGGGAGATACTGTTTTATCCCCAAAAATACGGGGGGGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGCGTGATAGGATTTTTCTTGTTTTTTGAGTGTTATAGGAGAGTTCCCGAGGGAAATCAGGGTAAAGCATGTGTTTATAGGAGAGTTTCCGAGAGAAATCAGGGTAAAGCATCTCTTTTATCCCCAAAAATACGGGGGGAGGATAGAAAAAATCAGAAATGGTCTTTACAGGATCCGGAGAATGAATCTGGTATTGTTGTCTTGCTTTCGTCTCCCTTCTTTCTTTGATTTACTCTCTCTCCTGTAAAGGAATAGAATATCTGATTCTGATTCTTTGACAATATTACCTAACTAACCGGATTGAACTGTAAAGGGGCGAAGCCGTGAGACCGAGAGGGAGAGAGATCATCTCAATCAATTTGTATGTGCATTTTGTCCTGTACTTGCTTGCTTAGCTTTCTTAGCCAACATCTCTGGTTTCTCCCGAACCAAGAGGTCCTGCTTATCCAGACCCAACAGTCACACTTGAAGCCGAAAGACTGATTTTTGCATAAAGTAGGTTCATAAGCCTTATTTGCAGGAAGACCAGTTGATATGGTTTGAAATCCATTAGGAGTCCCTTCACGAATGAATGTAGGACAAATATTTGTTTGAGTGCTCATTCGGGTGGTTAGTGGGGAGTTCGCTAAATAGACATTATCTCATAGTACCTTTTGATGAGAGATATGAACAAGAGGCTTCTAGAAAACAACTAGTCTTTTCCTCATTCTATTCAGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGATTGAAGAGTATCCGGGAAAAAGCAGCAGAATATTTGATGGAAGAATGGGAAATCCTTTTGAACACCCTGTCATAATAGGAAAACCTTATATCTTTCAATGA

mRNA sequence

ATGAGGCATGATCTTCCCTACCTAACCTGGCTGCACCACATGCAGCTCAGCAAAATGTACAGGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGATTGAAGAGTATCCGGGAAAAAGCAGCAGAATATTTGATGGAAGAATGGGAAATCCTTTTGAACACCCTGTCATAATAGGAAAACCTTATATCTTTCAATGA

Coding sequence (CDS)

ATGAGGCATGATCTTCCCTACCTAACCTGGCTGCACCACATGCAGCTCAGCAAAATGTACAGGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGATTGAAGAGTATCCGGGAAAAAGCAGCAGAATATTTGATGGAAGAATGGGAAATCCTTTTGAACACCCTGTCATAATAGGAAAACCTTATATCTTTCAATGA

Protein sequence

MRHDLPYLTWLHHMQLSKMYRPVSKQRVHGYLIEEYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ
Homology
[Close]
BLAST of CmoCh13G003040 vs. ExPASy Swiss-Prot
Match: Q8S8X9 (DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. ExPASy Swiss-Prot
Match: Q3C1G7 (DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. ExPASy Swiss-Prot
Match: Q33C46 (DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. ExPASy Swiss-Prot
Match: Q2MIJ5 (DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum OX=147425 GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. ExPASy Swiss-Prot
Match: Q2MIA8 (DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum OX=4081 GN=rpoB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-09
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. ExPASy TrEMBL
Match: A0A0S0ZKU8 (DNA-directed RNA polymerase subunit beta (Fragment) OS=Discophora guianensis OX=159368 GN=rpoB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFEHPVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRAGNPFEHPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. ExPASy TrEMBL
Match: V6BQG7 (DNA-directed RNA polymerase subunit beta OS=Schwalbea americana OX=86091 GN=rpoB PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.8e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGRMGNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRMGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. ExPASy TrEMBL
Match: A0A6B9XL95 (DNA-directed RNA polymerase subunit beta OS=Siphonostegia chinensis OX=374729 GN=rpoB PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.1e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SR+FDGRMGNPFE PVIIGKPYI +
Sbjct: 904 SELYE-ASKQTANPWVFEPEYPGK-SRLFDGRMGNPFEQPVIIGKPYILK 951

[Close]
BLAST of CmoCh13G003040 vs. ExPASy TrEMBL
Match: A0A6G7S8J3 (DNA-directed RNA polymerase subunit beta OS=Rauvolfia verticillata OX=329875 GN=rpoB PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y+  SKQ V+ ++ E EYPGK SRIFDGR GNPFE PV+IGKPYI +
Sbjct: 902 SELYQ-ASKQTVNPWVFEPEYPGK-SRIFDGRTGNPFEQPVLIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. ExPASy TrEMBL
Match: A0A1L2FNT8 (DNA-directed RNA polymerase subunit beta OS=Carissa macrocarpa OX=403101 GN=rpoB PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y+  SKQ V+ ++ E EYPGK SRIFDGR GNPFE PV+IGKPYI +
Sbjct: 902 SELYQ-ASKQTVNPWVFEPEYPGK-SRIFDGRTGNPFEQPVLIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: ALI91067.1 (RpoB, partial [Discophora guianensis])

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR GNPFEHPVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRAGNPFEHPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: YP_008964859.1 (RNA polymerase beta subunit [Schwalbea americana] >CDJ38611.1 RNA polymerase beta subunit [Schwalbea americana])

HSP 1 Score: 63.2 bits (152), Expect = 9.8e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGRMGNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRMGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: YP_010160219.1 (RNA polymerase beta subunit [Scrophularia cephalantha] >QRH17234.1 RNA polymerase beta subunit [Scrophularia cephalantha])

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ V+ ++ E EYPGK SRIFDGR GNPFE PVIIGKPYI +
Sbjct: 902 SELYE-ASKQTVNPWVFEPEYPGK-SRIFDGRTGNPFEQPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: QWY85436.1 (RNA polymerase beta subunit [Erythrophleum suaveolens])

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR G+PFEHPVIIGKPYI +
Sbjct: 902 SELYE-ASKQTANPWIFEPEYPGK-SRIFDGRTGDPFEHPVIIGKPYILK 949

[Close]
BLAST of CmoCh13G003040 vs. NCBI nr
Match: YP_009731746.1 (RNA polymerase beta subunit [Siphonostegia chinensis] >QHR84940.1 RNA polymerase beta subunit [Siphonostegia chinensis])

HSP 1 Score: 62.4 bits (150), Expect = 1.7e-06
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SR+FDGRMGNPFE PVIIGKPYI +
Sbjct: 904 SELYE-ASKQTANPWVFEPEYPGK-SRLFDGRMGNPFEQPVIIGKPYILK 951

[Close]
BLAST of CmoCh13G003040 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-09
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 17  SKMYRPVSKQRVHGYLIE-EYPGKSSRIFDGRMGNPFEHPVIIGKPYIFQ 66
           S++Y   SKQ  + ++ E EYPGK SRIFDGR G+PFE PVIIGKPYI +
Sbjct: 904 SELYE-ASKQTANPWVFEPEYPGK-SRIFDGRTGDPFEQPVIIGKPYILK 951

The following BLAST results are available for this feature:
BLAST of CmoCh13G003040 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8S8X96.4e-0964.00DNA-directed RNA polymerase subunit beta OS=Atropa belladonna OX=33113 GN=rpoB P... [more]
Q3C1G76.4e-0964.00DNA-directed RNA polymerase subunit beta OS=Nicotiana sylvestris OX=4096 GN=rpoB... [more]
Q33C466.4e-0964.00DNA-directed RNA polymerase subunit beta OS=Nicotiana tomentosiformis OX=4098 GN... [more]
Q2MIJ56.4e-0964.00DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum OX=147425 GN=r... [more]
Q2MIA86.4e-0964.00DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum OX=4081 GN=rpoB... [more]
BLAST of CmoCh13G003040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0S0ZKU82.8e-0766.00DNA-directed RNA polymerase subunit beta (Fragment) OS=Discophora guianensis OX=... [more]
V6BQG74.8e-0766.00DNA-directed RNA polymerase subunit beta OS=Schwalbea americana OX=86091 GN=rpoB... [more]
A0A6B9XL958.1e-0764.00DNA-directed RNA polymerase subunit beta OS=Siphonostegia chinensis OX=374729 GN... [more]
A0A6G7S8J31.1e-0664.00DNA-directed RNA polymerase subunit beta OS=Rauvolfia verticillata OX=329875 GN=... [more]
A0A1L2FNT81.1e-0664.00DNA-directed RNA polymerase subunit beta OS=Carissa macrocarpa OX=403101 GN=rpoB... [more]
BLAST of CmoCh13G003040 vs. NCBI nr
Match NameE-valueIdentityDescription
ALI91067.15.8e-0766.00RpoB, partial [Discophora guianensis][more]
YP_008964859.19.8e-0766.00RNA polymerase beta subunit [Schwalbea americana] >CDJ38611.1 RNA polymerase bet... [more]
YP_010160219.11.7e-0666.00RNA polymerase beta subunit [Scrophularia cephalantha] >QRH17234.1 RNA polymeras... [more]
QWY85436.11.7e-0664.00RNA polymerase beta subunit [Erythrophleum suaveolens][more]
YP_009731746.11.7e-0664.00RNA polymerase beta subunit [Siphonostegia chinensis] >QHR84940.1 RNA polymerase... [more]
BLAST of CmoCh13G003040 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00190.11.7e-0962.00RNA polymerase subunit beta [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003040.1CmoCh13G003040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding