CmoCh13G003000 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G003000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein L2
LocationCmo_Chr13: 3259201 .. 3259672 (+)
RNA-Seq ExpressionCmoCh13G003000
SyntenyCmoCh13G003000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATCCTAAGACCTTATTCACACAGCGAAGAAAGGTCGAATGTCAGGGGGAAGTCAGCTGGCTGCTTCTTGGCCACGCCCCCCGCAACTAGATAGGAGATACTTGATCTAAATTCTCAAATAGGAAATTGCATACCATTCACCGATATACGTATAGGAACATGGGTACATGATATAGAATGTTATCCAGGTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAAGAATGAAGGAACCTACACACCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATGGAGCCGAGCTACTACTACTAAAGGAGGTAGGCCTTCGGTGTCACCTTGAGGGAAGCACACCAGGGATTTCGGGCGGGGGCGGAATCGAAGCGAAGAAATTCTGA

mRNA sequence

ATGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATCCTAAGACCTTATTCACACAGCGAAGAAAGGTCGAATGTCAGGGGGAAGAGATACTTGATCTAAATTCTCAAATAGGAAATTGCATACCATTCACCGATATACGTATAGGAACATGGGTACATGATATAGAATGTTATCCAGGTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAAGAATGAAGGAACCTACACACCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATGGAGCCGAGCTACTACTACTAAAGGAGGTAGGCCTTCGGTGTCACCTTGAGGGAAGCACACCAGGGATTTCGGGCGGGGGCGGAATCGAAGCGAAGAAATTCTGA

Coding sequence (CDS)

ATGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATCCTAAGACCTTATTCACACAGCGAAGAAAGGTCGAATGTCAGGGGGAAGAGATACTTGATCTAAATTCTCAAATAGGAAATTGCATACCATTCACCGATATACGTATAGGAACATGGGTACATGATATAGAATGTTATCCAGGTCAAAGCGCAAAGCTGGCTCGAGCCGCAGGAACTTTTGCTAAAAGAATGAAGGAACCTACACACCCTACACTCTCTCTTAGGCTTGTGCGGCTACCTTCGGGTGTTGAAAAACTCATTGATGGAGCCGAGCTACTACTACTAAAGGAGGTAGGCCTTCGGTGTCACCTTGAGGGAAGCACACCAGGGATTTCGGGCGGGGGCGGAATCGAAGCGAAGAAATTCTGA

Protein sequence

MIGPNLRPATYCDPPRMAIHPKTLFTQRRKVECQGEEILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRLVRLPSGVEKLIDGAELLLLKEVGLRCHLEGSTPGISGGGGIEAKKF
Homology
[Close]
BLAST of CmoCh13G003000 vs. ExPASy Swiss-Prot
Match: P0C8K6 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-23
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNS++GN IP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK +KEP     S  L
Sbjct: 352 EILDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPA----SQCL 411

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 412 VRLPSGVEKLID 419

[Close]
BLAST of CmoCh13G003000 vs. ExPASy Swiss-Prot
Match: Q2F969 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-23
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNS++GN IP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK +KEP     S  L
Sbjct: 352 EILDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPA----SQCL 411

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 412 VRLPSGVEKLID 419

[Close]
BLAST of CmoCh13G003000 vs. ExPASy Swiss-Prot
Match: P92812 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL2 PE=2 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-23
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNS++GN IP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK +KEP     S  L
Sbjct: 352 EILDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPA----SQCL 411

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 412 VRLPSGVEKLID 419

[Close]
BLAST of CmoCh13G003000 vs. ExPASy Swiss-Prot
Match: P26859 (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-14
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 0 

Query: 34  QGEEILDLNSQ-IGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTL 93
           + + ILD   Q +GNCIP   I IGTWVH+IE  PGQ AKL RAAGTFA+ +++  +   
Sbjct: 347 ENKYILDSYYQMVGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQ 406

Query: 94  SLRLVRLPSGVEKLID 109
              +VRLPSGV+KLID
Sbjct: 407 C--IVRLPSGVDKLID 420

[Close]
BLAST of CmoCh13G003000 vs. ExPASy Swiss-Prot
Match: Q19VA8 (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus OX=3144 GN=rpl2 PE=3 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.8e-09
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 0 

Query: 16  RMAIHPKTLFTQRRKVECQGEEIL---DLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAK 75
           R  +HP+ L          GEEI+   D   Q+GN +P + I +GT +H+IE  PGQ  K
Sbjct: 102 RYVLHPRGLMV--------GEEIIAGPDAPLQLGNALPLSKIPLGTGIHNIEVSPGQGGK 161

Query: 76  LARAAGTFAKRM-KEPTHPTLSLRLVRLPSGVEKLI 108
           L RAAG  A+ + KE ++ T     VRLPSG  +L+
Sbjct: 162 LVRAAGGVAQLVAKEGSYVT-----VRLPSGEVRLV 184

[Close]
BLAST of CmoCh13G003000 vs. ExPASy TrEMBL
Match: A0A6V7PYK1 (Ribosomal_L2_C domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS19041 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 63/101 (62.38%), Postives = 70/101 (69.31%), Query Frame = 0 

Query: 22  KTLFTQRRKVECQGE--------------EILDLNSQIGNCIPFTDIRIGTWVHDIECYP 81
           KTLF QR KV  +G+              EILDLNS+ GNCIP  DIR+GTWVHDIEC+P
Sbjct: 9   KTLFAQRIKVGLKGQSAGCFLATPPAYRYEILDLNSKAGNCIPLADIRMGTWVHDIECHP 68

Query: 82  GQSAKLARAAGTFAKRMKEPTHPTLSLRLVRLPSGVEKLID 109
           GQ AKLARAAGT+AK +KEP        LVRLPSGVEKLID
Sbjct: 69  GQGAKLARAAGTYAKIIKEPAPQC----LVRLPSGVEKLID 105

[Close]
BLAST of CmoCh13G003000 vs. ExPASy TrEMBL
Match: A0A443NYW5 (Ribosomal protein L2 mitochondrion OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01249600 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.9e-23
Identity = 58/72 (80.56%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNSQ+GNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 59  EILDLNSQVGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 118

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 119 VRLPSGVEKLID 126

[Close]
BLAST of CmoCh13G003000 vs. ExPASy TrEMBL
Match: A0A7D4V835 (Ribosomal protein L2 OS=Magnolia biondii OX=86725 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.9e-23
Identity = 58/72 (80.56%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNSQ+GNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 402 EILDLNSQVGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 461

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 462 VRLPSGVEKLID 469

[Close]
BLAST of CmoCh13G003000 vs. ExPASy TrEMBL
Match: A0A7G3UWZ0 (Ribosomal protein L2 OS=Petrosavia sakuraii OX=119983 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNSQ+GNCIP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK MKEP        L
Sbjct: 351 EILDLNSQVGNCIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIMKEPAPQC----L 410

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 411 VRLPSGVEKLID 418

[Close]
BLAST of CmoCh13G003000 vs. ExPASy TrEMBL
Match: A0A7G3V0Y4 (Ribosomal protein L2 (Fragment) OS=Japonolirion osense OX=112799 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNSQ+GNCIP  DIR+GTWVHDIEC+PGQ AKLARAAGT+AK MKEP        L
Sbjct: 351 EILDLNSQVGNCIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIMKEPAPQC----L 410

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 411 VRLPSGVEKLID 418

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: KAF7117261.1 (hypothetical protein RHSIM_RhsimMtG0002500 [Rhododendron simsii])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-26
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0 

Query: 38  ILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRLV 97
           ILDLNSQIGNCI  +DIRIGTWVHDIEC+PGQ AKLARAAGTFAK MKEP  PTLSLRLV
Sbjct: 32  ILDLNSQIGNCIQLSDIRIGTWVHDIECHPGQGAKLARAAGTFAKIMKEPAPPTLSLRLV 91

Query: 98  RLPSGVEKLID 109
           RLPSGVEK+ID
Sbjct: 92  RLPSGVEKVID 102

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: WP_165001736.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EIL LN QIGNCIP  DIRIGTWVHDIEC+P +SAKLARAAGTFAK MKEP  PTLSLRL
Sbjct: 20  EILYLNYQIGNCIPLADIRIGTWVHDIECHPSKSAKLARAAGTFAKIMKEPAPPTLSLRL 79

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEK+ID
Sbjct: 80  VRLPSGVEKVID 91

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: CAD1835830.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 119.0 bits (297), Expect = 3.3e-23
Identity = 63/101 (62.38%), Postives = 70/101 (69.31%), Query Frame = 0 

Query: 22  KTLFTQRRKVECQGE--------------EILDLNSQIGNCIPFTDIRIGTWVHDIECYP 81
           KTLF QR KV  +G+              EILDLNS+ GNCIP  DIR+GTWVHDIEC+P
Sbjct: 9   KTLFAQRIKVGLKGQSAGCFLATPPAYRYEILDLNSKAGNCIPLADIRMGTWVHDIECHP 68

Query: 82  GQSAKLARAAGTFAKRMKEPTHPTLSLRLVRLPSGVEKLID 109
           GQ AKLARAAGT+AK +KEP        LVRLPSGVEKLID
Sbjct: 69  GQGAKLARAAGTYAKIIKEPAPQC----LVRLPSGVEKLID 105

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: KAF8364944.1 (hypothetical protein HHK36_033023 [Tetracentron sinense] >KAF8376878.1 hypothetical protein HHK36_031383 [Tetracentron sinense])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 59/72 (81.94%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNSQIGNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 56  EILDLNSQIGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 115

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 116 VRLPSGVEKLID 123

[Close]
BLAST of CmoCh13G003000 vs. NCBI nr
Match: KAF8370023.1 (hypothetical protein HHK36_031946 [Tetracentron sinense])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-22
Identity = 59/72 (81.94%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 37  EILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRMKEPTHPTLSLRL 96
           EILDLNSQIGNCIP  DIRIGTWVHDIEC PGQ AKLARAAGTFAK MKEP        L
Sbjct: 477 EILDLNSQIGNCIPLADIRIGTWVHDIECNPGQGAKLARAAGTFAKIMKEPAPQC----L 536

Query: 97  VRLPSGVEKLID 109
           VRLPSGVEKLID
Sbjct: 537 VRLPSGVEKLID 544

[Close]
BLAST of CmoCh13G003000 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 26  TQRRKVECQGEE---ILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAK 85
           TQ + +  Q +E    +D+NS IG+ +P   +RIGT +H+IE  PGQ AK+ RAAGT AK
Sbjct: 37  TQNKSLVAQMKEEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAK 96

Query: 86  RMKEPTHPTLSLRLVRLPSGVEKLID 109
            +KEP        L++LPSG  K I+
Sbjct: 97  ILKEPAKGKC---LIKLPSGDTKWIN 119

[Close]
BLAST of CmoCh13G003000 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0 

Query: 26  TQRRKVECQGEE---ILDLNSQIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAK 85
           TQ + +  Q +E    +D+NS IG+ +P   +RIGT +H+IE  PGQ AK+ RAAGT AK
Sbjct: 37  TQNKSLVAQMKEEMLHMDINSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAK 96

Query: 86  RMKEPTHPTLSLRLVRLPSGVEKLID 109
            +KEP        L++LPSG  K I+
Sbjct: 97  ILKEPAKGKC---LIKLPSGDTKWIN 119

[Close]
BLAST of CmoCh13G003000 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 51.2 bits (121), Expect = 7.9e-07
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 44  QIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRM-KEPTHPTLSLRLVRLPSG 103
           ++GN +P TD+ +GT +H+IE   G+  +LARAAG  AK + KE    TL     +LPSG
Sbjct: 123 KMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATL-----KLPSG 182

Query: 104 VEKLI 108
             +LI
Sbjct: 183 EVRLI 182

[Close]
BLAST of CmoCh13G003000 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 51.2 bits (121), Expect = 7.9e-07
Identity = 29/65 (44.62%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 44  QIGNCIPFTDIRIGTWVHDIECYPGQSAKLARAAGTFAKRM-KEPTHPTLSLRLVRLPSG 103
           ++GN +P TD+ +GT +H+IE   G+  +LARAAG  AK + KE    TL     +LPSG
Sbjct: 123 KMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATL-----KLPSG 182

Query: 104 VEKLI 108
             +LI
Sbjct: 183 EVRLI 182

The following BLAST results are available for this feature:
BLAST of CmoCh13G003000 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0C8K62.0e-2375.0060S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=... [more]
Q2F9692.0e-2375.0060S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G... [more]
P928122.0e-2375.0060S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947... [more]
P268596.5e-1455.2660S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2... [more]
Q19VA82.8e-0940.6350S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus OX=3144 GN=r... [more]
BLAST of CmoCh13G003000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6V7PYK11.6e-2362.38Ribosomal_L2_C domain-containing protein OS=Ananas comosus var. bracteatus OX=29... [more]
A0A443NYW57.9e-2380.56Ribosomal protein L2 mitochondrion OS=Cinnamomum micranthum f. kanehirae OX=3374... [more]
A0A7D4V8357.9e-2380.56Ribosomal protein L2 OS=Magnolia biondii OX=86725 GN=rpl2 PE=3 SV=1[more]
A0A7G3UWZ01.3e-2277.78Ribosomal protein L2 OS=Petrosavia sakuraii OX=119983 GN=rpl2 PE=3 SV=1[more]
A0A7G3V0Y41.3e-2277.78Ribosomal protein L2 (Fragment) OS=Japonolirion osense OX=112799 GN=rpl2 PE=3 SV... [more]
BLAST of CmoCh13G003000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7117261.11.1e-2687.32hypothetical protein RHSIM_RhsimMtG0002500 [Rhododendron simsii][more]
WP_165001736.11.2e-2584.72hypothetical protein [Candidatus Frankia datiscae][more]
CAD1835830.13.3e-2362.38unnamed protein product [Ananas comosus var. bracteatus][more]
KAF8364944.11.3e-2281.94hypothetical protein HHK36_033023 [Tetracentron sinense] >KAF8376878.1 hypotheti... [more]
KAF8370023.11.3e-2281.94hypothetical protein HHK36_031946 [Tetracentron sinense][more]
BLAST of CmoCh13G003000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G44065.11.6e-1245.35Ribosomal protein L2 family [more]
AT2G44065.21.6e-1245.35Ribosomal protein L2 family [more]
ATCG00830.17.9e-0744.62ribosomal protein L2 [more]
ATCG01310.17.9e-0744.62ribosomal protein L2 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 43..141
e-value: 1.6E-5
score: -10.7
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 44..109
e-value: 1.4E-12
score: 47.9
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 39..111
e-value: 3.2E-16
score: 60.9
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 32..108
NoneNo IPR availablePANTHERPTHR13691:SF539S RIBOSOMAL PROTEIN L2, MITOCHONDRIALcoord: 32..108
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 45..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003000.1CmoCh13G003000.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome