CmoCh13G002910 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G002910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Location	Cmo_Chr13: 2820937 .. 2821311 (+)
RNA-Seq Expression	CmoCh13G002910
Synteny	CmoCh13G002910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTTATGCGGTGCTAATGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCTCCGGGAATTTCAACTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTTCCCAGCCCCTTCTCATCAATGGACTCCTGAAGTATACGAAGGAGTGCGGTTCGTTCGATAA

mRNA sequence

ATGTTTTTATGCGGTGCTAATGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCTCCGGGAATTTCAACTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTTCCCAGCCCCTTCTCATCAATGGACTCCTGAAGTATACGAAGGAGTGCGGTTCGTTCGATAA

Coding sequence (CDS)

ATGTTTTTATGCGGTGCTAATGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGTTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATCGAGCTTCAAGAAATAGTAAATGGTCTTCTCAATACACAAATGTATAACTCTCCGGGAATTTCAACTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTTCCCAGCCCCTTCTCATCAATGGACTCCTGAAGTATACGAAGGAGTGCGGTTCGTTCGATAA

Protein sequence

MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGVRFVR

Homology

[Close]

BLAST of CmoCh13G002910 vs. ExPASy Swiss-Prot
Match: P0CC48 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica OX=13443 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.0e-64
Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGAND ITIFVAPECFSLCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDFITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGL+NTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. ExPASy Swiss-Prot
Match: P0CC49 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica OX=13443 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.0e-64
Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGAND ITIFVAPECFSLCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDFITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGL+NTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. ExPASy Swiss-Prot
Match: P0CC50 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-62
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEG 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEG
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of CmoCh13G002910 vs. ExPASy Swiss-Prot
Match: P0CC51 (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-62
Identity = 116/119 (97.48%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEG 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEG
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of CmoCh13G002910 vs. ExPASy Swiss-Prot
Match: P0CC40 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Carica papaya OX=3649 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-62
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEG 120
           LYGSSGGEIELQEIVNGL+NTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEG
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of CmoCh13G002910 vs. ExPASy TrEMBL
Match: A0A6H1XI52 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Begonia versicolor OX=200056 GN=ndhB PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.9e-63
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. ExPASy TrEMBL
Match: A0A2H4T217 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=ndhB PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.9e-63
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. ExPASy TrEMBL
Match: A0A4Y5RD62 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Cucumis hystrix OX=396994 GN=ndhB PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 8.9e-63
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. ExPASy TrEMBL
Match: A0A343AT46 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Populus davidiana OX=266767 GN=ndhB PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGL+NTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. ExPASy TrEMBL
Match: A0A343AT61 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Populus davidiana OX=266767 GN=ndhB PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGL+NTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. NCBI nr
Match: WP_206438305.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 249.2 bits (635), Expect = 1.8e-62
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 123 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 182

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 183 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 242

Query: 121 RFVR 125
           RFVR
Sbjct: 243 RFVR 246

[Close]

BLAST of CmoCh13G002910 vs. NCBI nr
Match: YP_009775178.1 (NdhB [Begonia versicolor] >YP_009775193.1 NdhB [Begonia versicolor] >QJA15234.1 NdhB [Begonia versicolor] >QJA15249.1 NdhB [Begonia versicolor])

HSP 1 Score: 249.2 bits (635), Expect = 1.8e-62
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. NCBI nr
Match: YP_009447495.1 (NADH dehydrogenase subunit 2 [Cucurbita maxima] >QCY72887.1 NdhB [Cucumis hystrix] >QWV60884.1 NADH-plastoquinone oxidoreductase subunit 2 [Cucurbita ficifolia] >ATY69925.1 NADH dehydrogenase subunit 2 [Cucurbita maxima] >QWV60903.1 NADH-plastoquinone oxidoreductase subunit 2 [Cucurbita ficifolia] >QZL38825.1 NADH-plastoquinone oxidoreductase subunit 2 [Cucurbita ficifolia])

HSP 1 Score: 249.2 bits (635), Expect = 1.8e-62
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. NCBI nr
Match: WP_131767150.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 249.2 bits (635), Expect = 1.8e-62
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 141 MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 200

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGLLNTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 201 LYGSSGGEIELQEIVNGLLNTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 260

Query: 121 RFVR 125
           RFVR
Sbjct: 261 RFVR 264

[Close]

BLAST of CmoCh13G002910 vs. NCBI nr
Match: QHN96891.1 (NAD(P)H-quinone oxidoreductase subunit 2 A [Arachis hypogaea])

HSP 1 Score: 248.4 bits (633), Expect = 3.1e-62
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW
Sbjct: 63  MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 122

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEGV 120
           LYGSSGGEIELQEIVNGL+NTQMYNSPGIS ALIFITVGIGFKL PAPSHQWTP+VYEGV
Sbjct: 123 LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGV 182

Query: 121 RFVR 125
           RFVR
Sbjct: 183 RFVR 186

[Close]

BLAST of CmoCh13G002910 vs. TAIR 10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 232.3 bits (591), Expect = 2.2e-61
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKD+RSNEAT KYLLMGGASSSILVHGFSW
Sbjct: 18  MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDIRSNEATMKYLLMGGASSSILVHGFSW 77

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEG 120
           LYGSSGGEIELQEIVNGL+NTQMYNSPGIS ALIFITVGIGFKL  APSHQWTP+VYEG
Sbjct: 78  LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEG 136

[Close]

BLAST of CmoCh13G002910 vs. TAIR 10
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 232.3 bits (591), Expect = 2.2e-61
Identity = 112/119 (94.12%), Postives = 115/119 (96.64%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           MFLCGANDLITIFVAPECFSLCSYLLSGYTKKD+RSNEAT KYLLMGGASSSILVHGFSW
Sbjct: 18  MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDIRSNEATMKYLLMGGASSSILVHGFSW 77

Query: 61  LYGSSGGEIELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYEG 120
           LYGSSGGEIELQEIVNGL+NTQMYNSPGIS ALIFITVGIGFKL  APSHQWTP+VYEG
Sbjct: 78  LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEG 136

[Close]

BLAST of CmoCh13G002910 vs. TAIR 10
Match: ATMG00285.1 (NADH dehydrogenase 2A )

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           +F+  A+DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+ G S 
Sbjct: 137 LFMISAHDLIAMYLAIEPQSLCFYVIAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSM 196

Query: 61  LYGSSGGE--IELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYE 120
           +YGS+G     +L +I+ G   T    S GI   ++ I VG  FK+   P H W P++YE
Sbjct: 197 IYGSTGATHFDQLAKILTGYEITGA-RSSGIFMGILSIAVGFLFKITAVPFHMWAPDIYE 256

[Close]

BLAST of CmoCh13G002910 vs. TAIR 10
Match: ATMG01320.1 (NADH dehydrogenase 2B )

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-17
Identity = 48/121 (39.67%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 1   MFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSW 60
           +F+  A+DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+ G S 
Sbjct: 137 LFMISAHDLIAMYLAIEPQSLCFYVIAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSM 196

Query: 61  LYGSSGGE--IELQEIVNGLLNTQMYNSPGISTALIFITVGIGFKLFPAPSHQWTPEVYE 120
           +YGS+G     +L +I+ G   T    S GI   ++ I VG  FK+   P H W P++YE
Sbjct: 197 IYGSTGATHFDQLAKILTGYEITGA-RSSGIFMGILSIAVGFLFKITAVPFHMWAPDIYE 256

The following BLAST results are available for this feature:

BLAST of CmoCh13G002910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CC48	6.0e-64	95.16	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica OX=1...	[more]
P0CC49	6.0e-64	95.16	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica OX=1...	[more]
P0CC50	1.9e-62	97.48	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus OX=...	[more]
P0CC51	1.9e-62	97.48	NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Cucumis sativus OX=...	[more]
P0CC40	3.3e-62	96.64	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Carica papaya OX=36...	[more]

BLAST of CmoCh13G002910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H1XI52	8.9e-63	97.58	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Begonia versicolor OX...	[more]
A0A2H4T217	8.9e-63	97.58	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A4Y5RD62	8.9e-63	97.58	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Cucumis hystrix OX=39...	[more]
A0A343AT46	1.5e-62	96.77	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Populus davidiana OX=...	[more]
A0A343AT61	1.5e-62	96.77	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Populus davidiana OX=...	[more]

BLAST of CmoCh13G002910 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_206438305.1	1.8e-62	97.58	hypothetical protein [Candidatus Frankia datiscae]	[more]
YP_009775178.1	1.8e-62	97.58	NdhB [Begonia versicolor] >YP_009775193.1 NdhB [Begonia versicolor] >QJA15234.1 ...	[more]
YP_009447495.1	1.8e-62	97.58	NADH dehydrogenase subunit 2 [Cucurbita maxima] >QCY72887.1 NdhB [Cucumis hystri...	[more]
WP_131767150.1	1.8e-62	97.58	hypothetical protein [Candidatus Frankia datiscae]	[more]
QHN96891.1	3.1e-62	96.77	NAD(P)H-quinone oxidoreductase subunit 2 A [Arachis hypogaea]	[more]

BLAST of CmoCh13G002910 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00890.1	2.2e-61	94.12	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATCG01250.1	2.2e-61	94.12	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]
ATMG00285.1	1.5e-17	39.67	NADH dehydrogenase 2A	[more]
ATMG01320.1	1.5e-17	39.67	NADH dehydrogenase 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 6..119 e-value: 6.5E-28 score: 97.8
None	No IPR available	PANTHER	PTHR45564	FAMILY NOT NAMED	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002910.1	CmoCh13G002910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006412	translation
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0003735	structural constituent of ribosome