CmoCh13G001000 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G001000
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr13: 566329 .. 567269 (-)
RNA-Seq ExpressionCmoCh13G001000
SyntenyCmoCh13G001000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGTTGGTCAGATATCCGTACGAGTCATGTGGATAATAGAAATCTCTTCCTCGTATGGTTTGCTCATCTTAGATATGTGGAGAAGGGGATCAAGTGAGTCATGTCATCCTTGTAAACAGGAAAATTCATAGACCATTCCCGTCGTCGTAAGATCACCCCTTGGATGTGTTAAATATTTAGGGGTCACGAACCAACGATCAAATCCTGTTCGATAAGTGGAATGCATTGGTTGTCCACACTTTTGTGGGGTCGGTAGGTTCGTTTGGAAGAGTACACCATTGTTATTAGAAAGCCTTTGAAAGACCTTTAGCCCTTCAACGTCAGATGCTTGTTCATGTTAGTTCACTGCTGCTAACTAGTTTAGCCCTTTCTCTTGCATGGTTATGACTTCATTCTAATCTGATTACCTCGTATTACACATCATTTCAGTGAATTAATAGGACGTTTTGTCGGAGAACATTACTCCGGTTTTGTGATGTTTCCTGCTGCTGGAGCTGAAAGCAAAACGACGAAGCGTGACGATACAAAACTGCAATGAGATGGAGACATTATCAATGGCGTTTCTCGGGACAGGCGTCTTGGGATTCAAAGGAGAAGGTAAAGAAGATGGTGAAAACACCATAGCTTCGAATCAAATGCAGGTGTTTGTTTCCTATTAAGAGAGTATGCAGTTTGTTGGGAGTACAATTCCAGTTACCCGCCTTATTTATCTAACATTTAAAAATCTCCGCTCACGCTCTCCCCTATTAAACGGGGTTTCCACCTATTCAAAGCGAGTTCTCGACCTTGGAAGATAAATAGATATCTCTACCCGGACTCTTTTTTTTTTTTTTCTCTACATGTTATTCATAAATTTGTTTCCATTATTAGGGGATGAGATTTGAGGGAATATGCTTTGTTCCCTTCATCATAACTATCTCATATTCTCATTCTTCT

mRNA sequence

ATGAATAGTTGGTCAGATATCCGTACGAGTCATGTGGATAATAGAAATCTCTTCCTCGTATGGTTTGCTCATCTTAGATATGTGGAGAAGGGGATCAATGAATTAATAGGACGTTTTGTCGGAGAACATTACTCCGGTTTTGTGATGTTTCCTGCTGCTGGAGCTGAAAGCAAAACGACGAAGCGTGACGATACAAAACTGCAATGAGATGGAGACATTATCAATGGCGTTTCTCGGGACAGGCGTCTTGGGATTCAAAGGAGAAGGTAAAGAAGATGGTGAAAACACCATAGCTTCGAATCAAATGCAGGTGTTTGTTTCCTATTAAGAGAGTATGCAGTTTGTTGGGAGTACAATTCCAGTTACCCGCCTTATTTATCTAACATTTAAAAATCTCCGCTCACGCTCTCCCCTATTAAACGGGGTTTCCACCTATTCAAAGCGAGTTCTCGACCTTGGAAGATAAATAGATATCTCTACCCGGACTCTTTTTTTTTTTTTTCTCTACATGTTATTCATAAATTTGTTTCCATTATTAGGGGATGAGATTTGAGGGAATATGCTTTGTTCCCTTCATCATAACTATCTCATATTCTCATTCTTCT

Coding sequence (CDS)

ATGAATAGTTGGTCAGATATCCGTACGAGTCATGTGGATAATAGAAATCTCTTCCTCGTATGGTTTGCTCATCTTAGATATGTGGAGAAGGGGATCAATGAATTAATAGGACGTTTTGTCGGAGAACATTACTCCGGTTTTGTGATGTTTCCTGCTGCTGGAGCTGAAAGCAAAACGACGAAGCGTGACGATACAAAACTGCAATGA

Protein sequence

MNSWSDIRTSHVDNRNLFLVWFAHLRYVEKGINELIGRFVGEHYSGFVMFPAAGAESKTTKRDDTKLQ
Homology
[Close]
BLAST of CmoCh13G001000 vs. NCBI nr
Match: KAG7019168.1 (hypothetical protein SDJN02_18126, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MNSWSDIRTSHVDNRNLFLVWFAHLRYVEKGINELIGRFVGEHYSGFVMFPAAGAESKTT 60
          MNSWSDIRTSHVDNRNLFLVWFAHLRYVEKGINELIGRFVGEHYSGFVMFPAAGAESKTT
Sbjct: 1  MNSWSDIRTSHVDNRNLFLVWFAHLRYVEKGINELIGRFVGEHYSGFVMFPAAGAESKTT 60

Query: 61 KRDDTKLQ 69
          KRDDTKLQ
Sbjct: 61 KRDDTKLQ 68

[Close]
BLAST of CmoCh13G001000 vs. NCBI nr
Match: KAG6583403.1 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 32  INELIGRFVGEHYSGFVMFPAAGAESKTTKRDDTKLQ 69
           ++ELIGRFVGEHYSGFVMFPAAGAESKTTKRDDTKLQ
Sbjct: 223 LSELIGRFVGEHYSGFVMFPAAGAESKTTKRDDTKLQ 259

The following BLAST results are available for this feature:
BLAST of CmoCh13G001000 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G001000 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G001000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019168.11.6e-31100.00hypothetical protein SDJN02_18126, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6583403.11.5e-1094.59Protein THYLAKOID ASSEMBLY 8-like, chloroplastic, partial [Cucurbita argyrosperm... [more]
BLAST of CmoCh13G001000 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G001000.1CmoCh13G001000.1mRNA