CmoCh13G000710 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G000710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCl574_1
LocationCmo_Chr13: 419437 .. 420685 (+)
RNA-Seq ExpressionCmoCh13G000710
SyntenyCmoCh13G000710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGCTCGATGGATCGTCGACCAAAACAATAGTCACGAGCAGCGTAGAGGCGTTGTTTCTGTATGCAAACACAAACAAAAAACAGAAAAGCACGCTCCCTACGCAGGCATTATCCTGTTCAGGTTCAAAGGGACTATCTCAGCCTGACCAGTTAGCCCCGGACGAGGAGCTACACTTGGTCGAGGCACCCCCGGTGCATTTCTTAAGTTAATATGATGAAAAGGACAAGGTCAAAACATAAAGCAAAGTAACAACTTTTTCTTAGTTCCAATAGATAGAGAAACAAAGCAGACGAACTTAAATACAGCCTGTGAAAGGGAATGAACAAGCTAAACTTTGTACTCTTCCATGGCCTGAAGCTGGAGACTCGAGCGAGTATTTAATTTCAGTTTTGGTCATCCAATCATCGATGCCGAGTCTCCTGCACTTCCAACCCTCTTCTTCGTGAGCAGTCCTGCATATTAGTATACCGTAAGAACCAACAAAAGGAATTAACTCATTCATATATATGAGTCTCTTTGTAAGAGCTCAACCCCACCGCTAGATGATATTGTTTGCTTTGACCTGTTACGTATCATCGTCAGCCTCACGGTTTTAAAACGTGTCTGCTAGGAAGAGGTTTCCACGCCCTTATAAGGAATGCTTCATCCCCTCTCCAACCGATGTAAGATCTCACAATTCACCCCCCCTTGGGAGCTAGCGTCCTTGCTGGCACACCGCCCAGTGACCGACTCTGATACCATTTGTAACAGTCAAGCCCACTGCTAGAATATATTGTTCGCTATGGCCTATTATGTATTGCTGGAAGCCTCATGGTTTTAAAACACGTTTGCTACGAATAGGTTTCCACCCCTTATAAGGAATGTTTCGTTCCCCTCTTCAACCGATGTGAAAGCTCACCCTTAAAGAACCAATATGAGAACGCGTGGTACCAAATCCTTTCAACCAAGGAGTAAAATCAAAAGGCCAAAAGTTTAGTGATTACTAACCTTCACCTCTTCAGGGAGTCCATGTAGCTTGCAGGCAAGTAGATTTCTCCACCAGTTTCACCATGTTGTTCACCACTAACGGTTTTCTTTGCAGCCAAGAACTCAGCACTCATAGCATCCATCCCTTGCTTCAGAGCTTCCTCTGCACTCCCGTACCCGTGTTCTTCAGCATACTTCCGCACATCCTCGGTTATCTTCATGGAGCAGAACTTAGGTCCACACATGGAACAGAAGTGAGCCACCTTGGCACCTTCTGA

mRNA sequence

ATGTACGCTCGATGGATCGTCGACCAAAACAATAGTCACGAGCAGCGTAGAGGCGTTGTTTCTGGACTATCTCAGCCTGACCAGTTAGCCCCGGACGAGGAGCTACACTTGGTCGAGGCACCCCCGCCTGTGAAAGGGAATGAACAAGCTAAACTTTGTACTCTTCCATGGCCTGAAGCTGGAGACTCGAGCGAGCAAGTAGATTTCTCCACCAGTTTCACCATGTTGTTCACCACTAACGGTTTTCTTTGCAGCCAAGAACTCAGCACTCATAGCATCCATCCCTTGCTTCAGAGCTTCCTCTGCACTCCCGTACCCGTGTTCTTCAGCATACTTCCGCACATCCTCGGTTATCTTCATGGAGCAGAACTTAGGTCCACACATGGAACAGAAGTGAGCCACCTTGGCACCTTCTGA

Coding sequence (CDS)

ATGTACGCTCGATGGATCGTCGACCAAAACAATAGTCACGAGCAGCGTAGAGGCGTTGTTTCTGGACTATCTCAGCCTGACCAGTTAGCCCCGGACGAGGAGCTACACTTGGTCGAGGCACCCCCGCCTGTGAAAGGGAATGAACAAGCTAAACTTTGTACTCTTCCATGGCCTGAAGCTGGAGACTCGAGCGAGCAAGTAGATTTCTCCACCAGTTTCACCATGTTGTTCACCACTAACGGTTTTCTTTGCAGCCAAGAACTCAGCACTCATAGCATCCATCCCTTGCTTCAGAGCTTCCTCTGCACTCCCGTACCCGTGTTCTTCAGCATACTTCCGCACATCCTCGGTTATCTTCATGGAGCAGAACTTAGGTCCACACATGGAACAGAAGTGAGCCACCTTGGCACCTTCTGA

Protein sequence

MYARWIVDQNNSHEQRRGVVSGLSQPDQLAPDEELHLVEAPPPVKGNEQAKLCTLPWPEAGDSSEQVDFSTSFTMLFTTNGFLCSQELSTHSIHPLLQSFLCTPVPVFFSILPHILGYLHGAELRSTHGTEVSHLGTF
Homology
[Close]
BLAST of CmoCh13G000710 vs. ExPASy TrEMBL
Match: A0A0A9QKT0 (Cl574_1 OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.8e-06
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 67  VDFSTSFTMLFTTNGFLCSQELSTHSIHPLLQSFLCTPVPVFFSILPHILGYLHGAELRS 126
           VD  + FTMLF TN F CSQ+ STHSIH L  SF+   V +F SIL +IL   H  +L  
Sbjct: 36  VDLPSCFTMLFPTNCFSCSQKFSTHSIHSLSHSFVYCSVTMFISILSNILCDFHRTKLGP 95

Query: 127 TH 129
           TH
Sbjct: 96  TH 97

[Close]
BLAST of CmoCh13G000710 vs. ExPASy TrEMBL
Match: A0A7C8Z932 (Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 0 

Query: 66  QVDFSTSFTMLFTTNGFLCSQELSTHSIHPLLQSFLCTPV 106
           QVDFSTSFT+LF+T+ FL S++LSTHS H LL SFLC  +
Sbjct: 61  QVDFSTSFTVLFSTHSFLSSKKLSTHSFHALLHSFLCITI 100

The following BLAST results are available for this feature:
BLAST of CmoCh13G000710 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9QKT03.8e-0653.23Cl574_1 OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7C8Z9323.2e-0567.50Uncharacterized protein (Fragment) OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
BLAST of CmoCh13G000710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G000710.1CmoCh13G000710.1mRNA