CmoCh13G000360 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G000360
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like
Location	Cmo_Chr13: 234779 .. 235432 (-)
RNA-Seq Expression	CmoCh13G000360
Synteny	CmoCh13G000360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGGTGTCTAAACCCGGTGGTGGGCCGTCGGAGGGATCATCTGCCGGAGCCTCGGCTGCTGCGACTACTCCGGCTCCGGCTCCGGCGAGCCGGTATGAATCTCAGAAGCGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTCTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTACATGCCTCGGGCTGCCCCTATTTCGGCCACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAAGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCCGCCCCGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAAGCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAGAAGCGGAAACGACACGCCGCCTCCGCCTCCGCCTCCGCCCCTGCTCCCACCGCTGCTATTCTGTCGGTGCCTCCAGAGACCCATGTTGTTTTGGCCGGTGAGGATCATCAGCCGGAAACATCTGATCCGAGTGGCGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

mRNA sequence

ATGGATCCGGTGTCTAAACCCGGTGGTGGGCCGTCGGAGGGATCATCTGCCGGAGCCTCGGCTGCTGCGACTACTCCGGCTCCGGCTCCGGCGAGCCGGTATGAATCTCAGAAGCGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTCTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTACATGCCTCGGGCTGCCCCTATTTCGGCCACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAAGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCCGCCCCGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAAGCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAGAAGCGGAAACGACACGCCGCCTCCGCCTCCGCCTCCGCCCCTGCTCCCACCGCTGCTATTCTGTCGGTGCCTCCAGAGACCCATGTTGTTTTGGCCGGTGAGGATCATCAGCCGGAAACATCTGATCCGAGTGGCGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

Coding sequence (CDS)

ATGGATCCGGTGTCTAAACCCGGTGGTGGGCCGTCGGAGGGATCATCTGCCGGAGCCTCGGCTGCTGCGACTACTCCGGCTCCGGCTCCGGCGAGCCGGTATGAATCTCAGAAGCGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTCTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTACATGCCTCGGGCTGCCCCTATTTCGGCCACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAAGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCCGCCCCGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAAGCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAGAAGCGGAAACGACACGCCGCCTCCGCCTCCGCCTCCGCCCCTGCTCCCACCGCTGCTATTCTGTCGGTGCCTCCAGAGACCCATGTTGTTTTGGCCGGTGAGGATCATCAGCCGGAAACATCTGATCCGAGTGGCGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

Protein sequence

MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAILSVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV

Homology

[Close]

BLAST of CmoCh13G000360 vs. ExPASy Swiss-Prot
Match: A2Y3I2 (Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-70
Identity = 142/197 (72.08%), Postives = 157/197 (79.70%), Query Frame = 0


Query: 22  AATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKV 81
           A   PA A  SRYESQKRRDWNTFLQYL+NHKPPL+L RCSGAHVIEFLKYLDQFGKTKV
Sbjct: 56  AQQAPAAAGLSRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKV 115

Query: 82  HASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFL 141
           HA GC YFG PNPPAPC CPL+QAWGSLDALIGRLRAAYEE+GGRPESNPFAARAVRI+L
Sbjct: 116 HADGCAYFGEPNPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYL 175

Query: 142 REVREAQAKARGIPYEKKKRKRHAASASASAPAPTA--AILSVPPETHVVL--AGEDHQP 201
           REVREAQAKARGIPYE KKRKR AA+A+A+ P   A   +++ P +       AGED   
Sbjct: 176 REVREAQAKARGIPYE-KKRKRGAAAAAAAPPVVVAPPPVVTAPDDATGTSGGAGEDDDD 235

Query: 202 ETSDPSGAPPPSTTAAS 215
           + +  SG    +T AAS
Sbjct: 236 DEATHSGEQQDTTPAAS 251

[Close]

BLAST of CmoCh13G000360 vs. ExPASy Swiss-Prot
Match: Q5W659 (Protein G1-like9 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L9 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-70
Identity = 142/197 (72.08%), Postives = 157/197 (79.70%), Query Frame = 0


Query: 22  AATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKV 81
           A   PA A  SRYESQKRRDWNTFLQYL+NHKPPL+L RCSGAHVIEFLKYLDQFGKTKV
Sbjct: 56  AQQAPAAAGLSRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKV 115

Query: 82  HASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFL 141
           HA GC YFG PNPPAPC CPL+QAWGSLDALIGRLRAAYEE+GGRPESNPFAARAVRI+L
Sbjct: 116 HADGCAYFGEPNPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYL 175

Query: 142 REVREAQAKARGIPYEKKKRKRHAASASASAPAPTA--AILSVPPETHVVL--AGEDHQP 201
           REVREAQAKARGIPYE KKRKR AA+A+A+ P   A   +++ P +       AGED   
Sbjct: 176 REVREAQAKARGIPYE-KKRKRGAAAAAAAPPVVVAPPPVVTAPDDATGTSGGAGEDDDD 235

Query: 202 ETSDPSGAPPPSTTAAS 215
           + +  SG    +T AAS
Sbjct: 236 DEATHSGEQQDTTPAAS 251

[Close]

BLAST of CmoCh13G000360 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-69
Identity = 137/186 (73.66%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTP-APAPASRYESQKRRDWNTFLQYLKNHKPPLSLA 60
           MDP    G GPS  ++ GA A A  P  PA  SRYESQKRRDWNTFLQYL+NH+PPL+LA
Sbjct: 1   MDP---SGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLA 60

Query: 61  RCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAA 120
           RCSGAHVIEFL+YLDQFGKTKVHASGC ++G P+PP PCPCPL+QAWGSLDALIGRLRAA
Sbjct: 61  RCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAA--------SASAS 178
           YEE+GG PESNPFAARAVRI+LREVR++QAKARGIPYEKKKRKR  A        S S+S
Sbjct: 121 YEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSS 180

[Close]

BLAST of CmoCh13G000360 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-69
Identity = 137/186 (73.66%), Postives = 152/186 (81.72%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTP-APAPASRYESQKRRDWNTFLQYLKNHKPPLSLA 60
           MDP    G GPS  ++ GA A A  P  PA  SRYESQKRRDWNTFLQYL+NH+PPL+LA
Sbjct: 1   MDP---SGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLA 60

Query: 61  RCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAA 120
           RCSGAHVIEFL+YLDQFGKTKVHASGC ++G P+PP PCPCPL+QAWGSLDALIGRLRAA
Sbjct: 61  RCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAA--------SASAS 178
           YEE+GG PESNPFAARAVRI+LREVR++QAKARGIPYEKKKRKR  A        S S+S
Sbjct: 121 YEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSS 180

[Close]

BLAST of CmoCh13G000360 vs. ExPASy Swiss-Prot
Match: Q9LMK2 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 8.2e-69
Identity = 130/162 (80.25%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 2   DPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARC 61
           DPV     GPS  SS           PA  SRYESQKRRDWNTFLQYLKNHKPPL+L+RC
Sbjct: 10  DPVKGDDPGPSFVSS----------PPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRC 69

Query: 62  SGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYE 121
           SGAHVIEFLKYLDQFGKTKVH + CPYFGH  PP+PC CPLKQAWGSLDALIGRLRAAYE
Sbjct: 70  SGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYE 129

Query: 122 ENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKR 164
           ENGGRP+SNPFAARAVRI+LREVRE+QAKARGIPYEKKKRKR
Sbjct: 130 ENGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKR 161

[Close]

BLAST of CmoCh13G000360 vs. ExPASy TrEMBL
Match: A0A6J1HK49 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464848 PE=3 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 3.8e-117
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 60
           MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR
Sbjct: 10  MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 69

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 70  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 129

Query: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180
           EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL
Sbjct: 130 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 189

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 218
           SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV
Sbjct: 190 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 226

[Close]

BLAST of CmoCh13G000360 vs. ExPASy TrEMBL
Match: A0A6J1HZM2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=LOC111469553 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.6e-107
Identity = 206/217 (94.93%), Postives = 209/217 (96.31%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 60
           MDPVSKPGGGPSE SSAGASAAATT  PAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR
Sbjct: 10  MDPVSKPGGGPSERSSAGASAAATT--PAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 69

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVH+SGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 70  CSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 129

Query: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180
           EENGGRPESNPFAARAVRIFLREVRE+QAKARGIPYEKKKRKRHAA ASA+APA  AAIL
Sbjct: 130 EENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPA--AAIL 189

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 218
           SVPPETHVVLA  DHQPETSDPSGAPPPSTTAASTAV
Sbjct: 190 SVPPETHVVLASVDHQPETSDPSGAPPPSTTAASTAV 222

[Close]

BLAST of CmoCh13G000360 vs. ExPASy TrEMBL
Match: A0A6J1GCE7 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN=LOC111452872 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.8e-82
Identity = 175/226 (77.43%), Postives = 184/226 (81.42%), Query Frame = 0


Query: 1   MDPVSKPGGGPS-----EGSSAGASA-AATTPAPAPASRYESQKRRDWNTFLQYLKNHKP 60
           MD V++ GGG S     EGSSAG SA  A   A AP SRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVTESGGGGSSEPTGEGSSAGGSAPLAAAAAAAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120
           PLSLARCSGAHVIEFLKYLDQFGKTKVH SGCPYFGHPNPPAPCPCPLKQAWGSLDALIG
Sbjct: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHGSGCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPA 180
           RLRAAYEENGGRPESNPFAARAVRI+LREVREAQAKARGIPYEKKKRKR  A+A+ S P 
Sbjct: 121 RLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKR--AAANVSVPP 180

Query: 181 PTAAILSVPPETHVVLAGEDHQPETS---DPSGAPPPSTTAASTAV 218
           PT   L+    +  V  G D QPET+   D +G  PPSTTAAST V
Sbjct: 181 PTDVSLAGSSSSATV--GADIQPETTAAGDQTGDAPPSTTAASTTV 222

[Close]

BLAST of CmoCh13G000360 vs. ExPASy TrEMBL
Match: A0A6J1KEN4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=LOC111493161 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.6e-81
Identity = 173/225 (76.89%), Postives = 182/225 (80.89%), Query Frame = 0


Query: 1   MDPVSKPGGGPS-----EGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPP 60
           MD V++ GGG S     EGSSAG SA     A AP SRYESQKRRDWNTFLQYLKNHKPP
Sbjct: 1   MDSVTESGGGGSSEPTGEGSSAGGSAPL---AAAPPSRYESQKRRDWNTFLQYLKNHKPP 60

Query: 61  LSLARCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGR 120
           LSLARCSGAHVIEFLKYLDQFGKTKVH SGCPYFGHPNPPAPCPCPLKQAWGSLDALIGR
Sbjct: 61  LSLARCSGAHVIEFLKYLDQFGKTKVHGSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGR 120

Query: 121 LRAAYEENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAP 180
           LRAAYEENGGRPESNPFAARAVRI+LREVREAQAKARGIPYEKKKRKR  A+ + S P P
Sbjct: 121 LRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKR--AATNVSVPPP 180

Query: 181 TAAILSVPPETHVVLAGEDHQPETS---DPSGAPPPSTTAASTAV 218
           T   L+    +  V  G D QPET+   D +G  PPSTTAAST V
Sbjct: 181 TDVSLAGSSSSATV--GGDIQPETTASGDQTGDAPPSTTAASTTV 218

[Close]

BLAST of CmoCh13G000360 vs. ExPASy TrEMBL
Match: A0A5A7UVV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00670 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.8e-80
Identity = 169/229 (73.80%), Postives = 177/229 (77.29%), Query Frame = 0


Query: 1   MDPVSKP-GGGPSEGSSAGASAA-----ATTPAPAPASRYESQKRRDWNTFLQYLKNHKP 60
           MD VS+  GGG SE +  G S+A     A     AP SRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120
           PL LARCSGAHVIEFLKYLDQFGKTKVHAS CPYFGHPNPPAPCPCPLKQAWGSLDALIG
Sbjct: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPA 180
           RLRAAYEENGGRPESNPFAARAVRI+LREVREAQAKARGIPYEKKKRKR         PA
Sbjct: 121 RLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKR---------PA 180

Query: 181 PTAAILSVPPETHVVLAGEDHQPETS------DPSGAPPPSTTAASTAV 218
           PTA        T       D+QPET+      DP+ APPPSTTAAST+V
Sbjct: 181 PTAPPPETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 220

[Close]

BLAST of CmoCh13G000360 vs. NCBI nr
Match: XP_022964866.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita moschata])

HSP 1 Score: 430.6 bits (1106), Expect = 7.8e-117
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 60
           MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR
Sbjct: 10  MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 69

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 70  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 129

Query: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180
           EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL
Sbjct: 130 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 189

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 218
           SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV
Sbjct: 190 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 226

[Close]

BLAST of CmoCh13G000360 vs. NCBI nr
Match: XP_023520079.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421.4 bits (1082), Expect = 4.7e-114
Identity = 212/217 (97.70%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 60
           MDPVSKPGGG SEGSSAGASAAATTPAPAP+SRYESQKRRDWNTFLQYLKNHKPPL LAR
Sbjct: 1   MDPVSKPGGGSSEGSSAGASAAATTPAPAPSSRYESQKRRDWNTFLQYLKNHKPPLGLAR 60

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120

Query: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180
           EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL
Sbjct: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 218
           SVPPETHVV AGEDHQPETSDPSGAPPPSTTAAS AV
Sbjct: 181 SVPPETHVVFAGEDHQPETSDPSGAPPPSTTAASAAV 217

[Close]

BLAST of CmoCh13G000360 vs. NCBI nr
Match: KAG7019116.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 414.8 bits (1065), Expect = 4.4e-112
Identity = 212/217 (97.70%), Postives = 212/217 (97.70%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 60
           MDPVSKPGGGPSEGSSAGASAAATTPA APASRYESQKRRDWNTFLQYLKNHKPPL LAR
Sbjct: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120

Query: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180
           EENGG PESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHA  ASASAPAPTAAIL
Sbjct: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHA--ASASAPAPTAAIL 180

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 218
           SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV
Sbjct: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 215

[Close]

BLAST of CmoCh13G000360 vs. NCBI nr
Match: KAG6583346.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 414.5 bits (1064), Expect = 5.8e-112
Identity = 211/217 (97.24%), Postives = 211/217 (97.24%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 60
           MDPVSKPGGGPSEGSSAGASAAAT PA APASRYESQKRRDWNTFLQYLKNHKPPL LAR
Sbjct: 1   MDPVSKPGGGPSEGSSAGASAAATAPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120

Query: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180
           EENGGRPESNPFAARAVRIFLREVRE QAKARGIPYEKKKRKRHA  ASASAPAPTAAIL
Sbjct: 121 EENGGRPESNPFAARAVRIFLREVREGQAKARGIPYEKKKRKRHA--ASASAPAPTAAIL 180

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 218
           SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV
Sbjct: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 215

[Close]

BLAST of CmoCh13G000360 vs. NCBI nr
Match: XP_022970622.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima])

HSP 1 Score: 398.7 bits (1023), Expect = 3.3e-107
Identity = 206/217 (94.93%), Postives = 209/217 (96.31%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 60
           MDPVSKPGGGPSE SSAGASAAATT  PAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR
Sbjct: 10  MDPVSKPGGGPSERSSAGASAAATT--PAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 69

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVH+SGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 70  CSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 129

Query: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180
           EENGGRPESNPFAARAVRIFLREVRE+QAKARGIPYEKKKRKRHAA ASA+APA  AAIL
Sbjct: 130 EENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPA--AAIL 189

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 218
           SVPPETHVVLA  DHQPETSDPSGAPPPSTTAASTAV
Sbjct: 190 SVPPETHVVLASVDHQPETSDPSGAPPPSTTAASTAV 222

[Close]

BLAST of CmoCh13G000360 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 261.5 bits (667), Expect = 5.8e-70
Identity = 130/162 (80.25%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 2   DPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARC 61
           DPV     GPS  SS           PA  SRYESQKRRDWNTFLQYLKNHKPPL+L+RC
Sbjct: 10  DPVKGDDPGPSFVSS----------PPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRC 69

Query: 62  SGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYE 121
           SGAHVIEFLKYLDQFGKTKVH + CPYFGH  PP+PC CPLKQAWGSLDALIGRLRAAYE
Sbjct: 70  SGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYE 129

Query: 122 ENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKR 164
           ENGGRP+SNPFAARAVRI+LREVRE+QAKARGIPYEKKKRKR
Sbjct: 130 ENGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKR 161

[Close]

BLAST of CmoCh13G000360 vs. TAIR 10
Match: AT5G58500.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 244.6 bits (623), Expect = 7.4e-65
Identity = 121/162 (74.69%), Postives = 142/162 (87.65%), Query Frame = 0


Query: 13  EGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKY 72
           EG +A  +AA+++ +P   SRYESQKRRDWNTFLQYL+NHKPPL+L+RCSGAHV+EFLKY
Sbjct: 2   EGETAAKAAASSSSSP---SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKY 61

Query: 73  LDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEE-NGGRPESNP 132
           LDQFGKTKVHA+ CP+FG PNPP+ C CPLKQAWGSLDALIGRLRAA+EE  GG PESNP
Sbjct: 62  LDQFGKTKVHATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNP 121

Query: 133 FAARAVRIFLREVREAQAKARGIPYEKKKRKR-HAASASASA 173
           FAA+AVRI+L+EVR+ QAKARGIPY+KKKRKR H  +A+  A
Sbjct: 122 FAAKAVRIYLKEVRQTQAKARGIPYDKKKRKRPHTDTATPIA 160

[Close]

BLAST of CmoCh13G000360 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 242.3 bits (617), Expect = 3.7e-64
Identity = 115/169 (68.05%), Postives = 146/169 (86.39%), Query Frame = 0


Query: 10  GPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEF 69
           G + G +    +++++P+ A +SRYE+QKRRDWNTF QYL+NH+PPLSL+RCSGAHV+EF
Sbjct: 32  GATGGEATQPLSSSSSPS-ANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEF 91

Query: 70  LKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPES 129
           L+YLDQFGKTKVH + C ++GHPNPPAPCPCPL+QAWGSLDALIGRLRAA+EENGG+PE+
Sbjct: 92  LRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPET 151

Query: 130 NPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAA 179
           NPF ARAVR++LREVR+ Q+KARG+ YEKKKRKR   S+S S+ +  A+
Sbjct: 152 NPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVAS 199

[Close]

BLAST of CmoCh13G000360 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-63
Identity = 114/160 (71.25%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 15  SSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLD 74
           +S+ +S+++        SRYE+QKRRDWNTF QYL+NH+PPLSL+RCSGAHV+EFL+YLD
Sbjct: 30  TSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLD 89

Query: 75  QFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAA 134
           QFGKTKVH   CP+FGHPNPPAPC CPL+QAWGSLDALIGRLRAA+EENGG PE+NPF A
Sbjct: 90  QFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGA 149

Query: 135 RAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPA 175
           RAVR++LREVR++QAKARGI YEKKKRKR       + PA
Sbjct: 150 RAVRLYLREVRDSQAKARGISYEKKKRKRPPPPLPPAQPA 189

[Close]

BLAST of CmoCh13G000360 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 233.0 bits (593), Expect = 2.2e-61
Identity = 107/152 (70.39%), Postives = 126/152 (82.89%), Query Frame = 0


Query: 22  AATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLARCSGAHVIEFLKYLDQFGKTKV 81
           ++T   P  +SRYE+QKRRDWNTF QYL+NH+PPLSL  CSGAHV+EFL+YLDQFGKTKV
Sbjct: 14  SSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKV 73

Query: 82  HASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGRPESNPFAARAVRIFL 141
           H   C +FG PNPPAPCPCPL+QAWGSLDALIGRLRAAYEENGG PE+NPF +RAVR+FL
Sbjct: 74  HHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFL 133

Query: 142 REVREAQAKARGIPYEKKKRKRHAASASASAP 174
           REVR+ QAKARG+ YEKK+++ +        P
Sbjct: 134 REVRDFQAKARGVSYEKKRKRVNRQKPQTQPP 165

The following BLAST results are available for this feature:

BLAST of CmoCh13G000360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Y3I2	1.5e-70	72.08	Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1	[more]
Q5W659	1.5e-70	72.08	Protein G1-like9 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L9 PE=1 SV=1	[more]
A2XED8	1.3e-69	73.66	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	1.3e-69	73.66	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q9LMK2	8.2e-69	80.25	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CmoCh13G000360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HK49	3.8e-117	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HZM2	1.6e-107	94.93	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GCE7	1.8e-82	77.43	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KEN4	2.6e-81	76.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7UVV8	4.8e-80	73.80	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of CmoCh13G000360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022964866.1	7.8e-117	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita moschata]	[more]
XP_023520079.1	4.7e-114	97.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Cucurbita pepo subsp. pepo]	[more]
KAG7019116.1	4.4e-112	97.70	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583346.1	5.8e-112	97.24	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_022970622.1	3.3e-107	94.93	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima]	[more]

BLAST of CmoCh13G000360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07090.1	5.8e-70	80.25	Protein of unknown function (DUF640)	[more]
AT5G58500.1	7.4e-65	74.69	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.7e-64	68.05	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.8e-63	71.25	Protein of unknown function (DUF640)	[more]
AT5G28490.1	2.2e-61	70.39	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 24..146 e-value: 4.9E-66 score: 220.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 33..160 score: 83.80558
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR31165:SF82	PROTEIN G1-LIKE9	coord: 14..173
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 14..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G000360.1	CmoCh13G000360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus