CmoCh13G000150 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G000150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description28S ribosomal protein S29, mitochondrial
LocationCmo_Chr13: 160270 .. 161511 (-)
RNA-Seq ExpressionCmoCh13G000150
SyntenyCmoCh13G000150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGCAGTGGGCGCGCTCTTCAGAGTCCGGCGAAACCCGAAACCTCGCGTTCATCTTCATTCTCATTTCCGAGCGCCGGAAAACTTTGAGGTCAATTTTTTAGAGCATCAGCGCTGCCTCTAAGCACCACCTCTGCAATCGAAATCCTTCTCCTACCCTATCTCTTGTTTCAAATTACTCAGCTAAGACCACCAAATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCGATGATCCCTCCGCCTCCGCTGCTGCTTCAGACGAATTAGATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGGTCGCCCTCTCTTTACCTCCGCATCTTCACTCTCACAGCTCACTCGCAAGGATGCAGGCAATTATTTCTAATTCAAGTACGTATCTGAAGTCGTTTGGATCGCTAACTCATGTTTTTATTATTTTATTTTTGGTCTTTTTAACTCTCGAACCTTGTATGTGCATCAGATTTAGACATGTAGTTTATTGGTATATTTCCTAATTCTATTGACAAAAGTTAAATCTCTCTAACCATGTTTGGAATCTTAACAAGGGAAACGGTCTCTCATGATCATGATTGCTTAGGGTTGCTGGCTGGTTAATGTTTTATGCCAAGTGTTTACTGTCTTGTGATAAGCTTTCAGGAGATCATGTGAGGACTGTGGATAATATGAAACAGTGACCCATTCACTTTACATTGTCCTCTTTGAGCTCTCCCTTTTCAATCGCGTTTATTAGGGAGAGATTTCCACACCCTTATAAAGAATAGTTCGTTCCCCTCTCCAACTGATGTCAATTGCTATGGCTAAGTCAAATTTCTGAACCTATACCGTTGACAGAGGGCATTGGCGTTGGGATGGTGAAAGGGGCTGATTGCATGAGGATGCCTGTGGGTTCAACTGTATATATGACTTAATTGATACTGGAATCAAGCACACTCATGCGGCTGTTGGGGTGGTTGTTCGTTTAAGAAAAGAACTATCGCTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAGTGAGGCACAAATCTAAATCTACCCTTTTTTTGATTTCTAATAGTAAGTTTCTTGGATGAATTAAATCTTCCAAAATTAATTTTAATCGCAATAATAATTGTTACTTCTTGTACAGAATGACAACTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAG

mRNA sequence

TTAGCAGTGGGCGCGCTCTTCAGAGTCCGGCGAAACCCGAAACCTCGCGTTCATCTTCATTCTCATTTCCGAGCGCCGGAAAACTTTGAGGTCAATTTTTTAGAGCATCAGCGCTGCCTCTAAGCACCACCTCTGCAATCGAAATCCTTCTCCTACCCTATCTCTTGTTTCAAATTACTCAGCTAAGACCACCAAATCCACCGTTAAGAAGGGCAAGTCCAAGGCCGACGCTAAAGCCGCCGATGATCCCTCCGCCTCCGCTGCTGCTTCAGACGAATTAGATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGGTCGCCCTCTCTTTACCTCCGCATCTTCACTCTCACAGCTCACTCGCAAGGATGCAGGCAATTATTTCTAATTCAAAGGGCATTGGCGTTGGGATGGTGAAAGGGGCTGATTGCATGAGGATGCCTGTGGAACTATCGCTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAAATGACAACTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAG

Coding sequence (CDS)

ATGCGGCGCTTTCTGATGATGATCCCTCATTCGATGTTGGCACATATGGTCGCCCTCTCTTTACCTCCGCATCTTCACTCTCACAGCTCACTCGCAAGGATGCAGGCAATTATTTCTAATTCAAAGGGCATTGGCGTTGGGATGGTGAAAGGGGCTGATTGCATGAGGATGCCTGTGGAACTATCGCTTGTGAAAGATATTCCTGTGCTCATTGCTATTGATCAAAATGACAACTGGTTTACGTTCAGTGAGTATGAAGAACCAGTGACTGTTCGTTCTACTCCGCCAATACGTTGCTAG

Protein sequence

MRRFLMMIPHSMLAHMVALSLPPHLHSHSSLARMQAIISNSKGIGVGMVKGADCMRMPVELSLVKDIPVLIAIDQNDNWFTFSEYEEPVTVRSTPPIRC
Homology
BLAST of CmoCh13G000150 vs. ExPASy TrEMBL
Match: A0A5A7UZA8 (28S ribosomal protein S29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00370 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.0e-14
Identity = 48/83 (57.83%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G+GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 271 EGVGVGMAKGADSMRMPDGSTLYDLIDTGIKHTHAAVGVVVRLRKELSLVKDIPVLIAID 330

BLAST of CmoCh13G000150 vs. ExPASy TrEMBL
Match: A0A1S3C6G8 (28S ribosomal protein S29, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497026 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.0e-14
Identity = 48/83 (57.83%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G+GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 271 EGVGVGMAKGADSMRMPDGSTLYDLIDTGIKHTHAAVGVVVRLRKELSLVKDIPVLIAID 330

BLAST of CmoCh13G000150 vs. ExPASy TrEMBL
Match: A0A0A0LVC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533720 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 48/83 (57.83%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 272 EGAGVGMAKGADSMRMPEGSTLYDLIDTGIKHTHVAVGVVVRLRKELSLVKDIPVLIAID 331

BLAST of CmoCh13G000150 vs. ExPASy TrEMBL
Match: A0A0A0KG66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G310480 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 48/83 (57.83%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 272 EGAGVGMAKGADSMRMPEGSTLYDLIDTGIKHTHVAVGVVVRLRKELSLVKDIPVLIAID 331

BLAST of CmoCh13G000150 vs. ExPASy TrEMBL
Match: A0A2I0VVM1 (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca020378 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 46/87 (52.87%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 38  ISNSKGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVL 97
           IS  +G GVGM+KG D M MP                            ELSLVKD+PVL
Sbjct: 271 ISLGEGAGVGMMKGVDSMEMPEGSTLFDLIQTGIAYTHASVGVVVRLRKELSLVKDVPVL 330

BLAST of CmoCh13G000150 vs. NCBI nr
Match: KAG6583329.1 (hypothetical protein SDJN03_19261, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 16  MVALSLPPHLHSHSSLARMQAIISNSKGIGVGMVKGADCMRMPVELSLVKDIPVLIAIDQ 75
           MVALSLPPHLHSHSSLARMQAIISNSKGIGVGMVKGADCMRMPV   LVKDIPVLIAIDQ
Sbjct: 1   MVALSLPPHLHSHSSLARMQAIISNSKGIGVGMVKGADCMRMPVVRLLVKDIPVLIAIDQ 60

Query: 76  NDNWFTFSEYEEPVTVRSTPPIRC 100
           ND WFTFSEYEEPVTVRSTPPIRC
Sbjct: 61  NDKWFTFSEYEEPVTVRSTPPIRC 84

BLAST of CmoCh13G000150 vs. NCBI nr
Match: XP_008457304.1 (PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo] >KAA0059987.1 28S ribosomal protein S29 [Cucumis melo var. makuwa] >TYJ97246.1 28S ribosomal protein S29 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 48/83 (57.83%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G+GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 271 EGVGVGMAKGADSMRMPDGSTLYDLIDTGIKHTHAAVGVVVRLRKELSLVKDIPVLIAID 330

BLAST of CmoCh13G000150 vs. NCBI nr
Match: XP_011657272.1 (28S ribosomal protein S29, mitochondrial [Cucumis sativus] >KGN47392.1 hypothetical protein Csa_023053 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-13
Identity = 48/83 (57.83%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 272 EGAGVGMAKGADSMRMPEGSTLYDLIDTGIKHTHVAVGVVVRLRKELSLVKDIPVLIAID 331

BLAST of CmoCh13G000150 vs. NCBI nr
Match: XP_004145300.3 (28S ribosomal protein S29, mitochondrial [Cucumis sativus] >KAE8653293.1 hypothetical protein Csa_023268 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-13
Identity = 48/83 (57.83%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G GVGM KGAD MRMP                            ELSLVKDIPVLIAID
Sbjct: 272 EGAGVGMAKGADSMRMPEGSTLYDLIDTGIKHTHVAVGVVVRLRKELSLVKDIPVLIAID 331

BLAST of CmoCh13G000150 vs. NCBI nr
Match: XP_038895729.1 (28S ribosomal protein S29, mitochondrial [Benincasa hispida])

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-13
Identity = 47/83 (56.63%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G+GVGM+KGAD M MP                            ELSLVKDIPVLIAID
Sbjct: 272 EGVGVGMMKGADSMTMPDGSTLYDLIDTGIKHTHAAVGVVVRLRKELSLVKDIPVLIAID 331

BLAST of CmoCh13G000150 vs. TAIR 10
Match: AT1G16870.1 (mitochondrial 28S ribosomal protein S29-related )

HSP 1 Score: 67.8 bits (164), Expect = 5.7e-12
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 42  KGIGVGMVKGADCMRMP---------------------------VELSLVKDIPVLIAID 98
           +G GVG +KGAD M +P                            ELS+VKD+PVLI ID
Sbjct: 297 EGAGVGYLKGADAMPIPEDSTLYDLVQMGIKSTHAAVNVVVRLRKELSVVKDVPVLIVID 356

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UZA88.0e-1457.8328S ribosomal protein S29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3C6G88.0e-1457.8328S ribosomal protein S29, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497026... [more]
A0A0A0LVC22.3e-1357.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533720 PE=3 SV=1[more]
A0A0A0KG662.3e-1357.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G310480 PE=3 SV=1[more]
A0A2I0VVM11.2e-1252.87Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca020378 PE=3... [more]
Match NameE-valueIdentityDescription
KAG6583329.11.4e-3695.24hypothetical protein SDJN03_19261, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008457304.11.6e-1357.83PREDICTED: 28S ribosomal protein S29, mitochondrial [Cucumis melo] >KAA0059987.1... [more]
XP_011657272.14.8e-1357.8328S ribosomal protein S29, mitochondrial [Cucumis sativus] >KGN47392.1 hypotheti... [more]
XP_004145300.34.8e-1357.8328S ribosomal protein S29, mitochondrial [Cucumis sativus] >KAE8653293.1 hypothe... [more]
XP_038895729.16.3e-1356.6328S ribosomal protein S29, mitochondrial [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT1G16870.15.7e-1245.78mitochondrial 28S ribosomal protein S29-related [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G000150.1CmoCh13G000150.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0043229 intracellular organelle