CmoCh12G013460 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013460
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Replication protein A subunit
Location	Cmo_Chr12: 11641987 .. 11646995 (+)
RNA-Seq Expression	CmoCh12G013460
Synteny	CmoCh12G013460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCGGATAATCATCTTTCTATTATCGGCAAGAGACTCCGATTTTTTTCTGTAATTACGCTTCATTTCCATCATCAATGCCTAATCGCTATCCCTATTCATTCGCATTGCTTCTCAATCTTGCTTTCTCTTCCATTTTCCTATGGTTTTCATTAGGTTCTTGGTGATCTTCTACATTCGTTTCACGATTCACTCTCAAGCTCTCCTGCTGTCGCGTTTTCACCGCACCGAATGCGATTCCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCTTCTGGTGCAGATCCTAGATGTCAAGATGATCGGTAACGCGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCCGTTAGTGCCGACGGATGGTTGTTCTCTTCTTTTGTGTTGTTAAAATCTGCGTATATGATCACATCATGGGGAAAATGGTTTTATTGTCGGTTTACGTTCTTGTTTGAAATGCTAGGTGAATGCATTAATTACTGACTGAGGTTATTAAATTTTAATCACTGACTATCTTTGTACTGTTTGGTTTAGGGTTTAGTGGCAATCTCTCATTTTCATGTACACATCATGAGAAAAAGTCCCATTGTTAGCTGTGTAAATAGTGCTGCTTTATGGGATATGCCCTCGTGATCATGTTAATTATAGTATCTAGATTCCCATTCCATTCCGACGTAGCTTTATAAACCAAGATTACTTGTAAAATGTCCAAGACAACCGTTTTCTTTCAGACTTATCAGTGAAATTGAGAGTGCTGAAACCAACTCTATTTTGGATGTTGTTAGTATGGTAACATCTACCAATCCATCAATTCCTGTGTTGAGCAAAACTGGTATGGAAACTCAAAGAAGAGTTCACAATTTGAAGGATGCATCTGGCAAGAGGTGTAGAGGAGTTGTGATTACAGATATCTTGTTCATGCCCAAATCCAAGACCATACTGGTTTGACATGGGTTTCCAGGAGTCTGGTGAAGAGATTCTAGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTATGAAGAGCATTTTTGATCAATTTCTGTCCAGGCTCAAAATTACTGAGGGGGTGTATTGGGATGAATAGAGTGTGATATCCCACCTTGGTTGAGGAGGAGAACGAAACACCCTTTATAAGGGTGTGGCAGACGCATTGAGGGGAAGCCCGAAAGAGAGAGTCCAAAAAAGATAATATCCGCTAGCGGTGGACTTGAGCCGTTACACAGAGCGTGAAAAATACGGTTATCTGGCATATTGATCCTTTGATGTGAAAAGTGTATAAAATTTATAGCTTCAGTTTGCCAAAGAATGGTTAGACTGTAGCCAGGTTACTGACATATTGTTGAGTGATCGCAAACTGAACGTATGGCATTGTAGGTTGAATGCCGTGGTGGGCTTCGGGCACATCAAGAAGATAAAGCAAACGTGGTCTACATTTCCGGTAAAAACAAATTCTTTGCTGCAAATGGAAACTTTAGATTCAATATGTTATATAGTTTGTGGTGAATTTACAGCAGGAGCCGCATATTACACACATAACACAGAAACAACCACTACAGACAATGGAACATGAGGGACGAAGAATGGAAAATGATAAGATAATTGGTCGAATGTCATCCTCCGACACTCAGGTCCGCTTTACGGGGTCGAAATTGGAGACACCGATAATTGCACCCAAGATAGCAGTGACAACTACTCCACCGGCGGCAATACTGAGCAAGAAATTCTTGAGAGAAGGGGTAACTCCAGCTCCTGCAGCTTCAGCCACCTCAGGAAGCACCATGGAGGCCGTCAGTGCAGTTGCAGCCAATCCAGCAATTGCCTTCTCCTTCACAGAAGCCCGCACTTGGAACTTGGCGCTGCTGGATTTTGATGCAGCAATTGGCTTGTTGGAAGGCCTCAAAGGCAATGCCTTAGCGAAGGCCTCGGTGCTCCTCACTCTCTTCTGGGTCGCATTAGTAATTGGCATAGCCATTGAAACTGCGGAAGTTGAAGCCATCTGATTCTCTCTTGCCTTCTCTTTCAAACTGGATTGAAGCAGCTTTTGTTTAGGTCTCTTCCTGAATTGATTTGAGGAAATAGAGTGAGAGGATAGATAGAGGTGGTGGAAGGGTGAGAGTTAGCGGTCCAAATTTGAGATATCATGTGGACTTAGTTTCTGTGCCTCTGCCCCATGTGGCAAGTTTTGCACTTGACATTGACGATAAGATTATCTTGTTGGTCCAATCACCTTCCAGGAATTGGTTTGCAAGACGTTGCGGCAATATCCTACTCGTATTATTATTTTTTTTCTCAAAAGCATTGTGGTATACTTTACATTCAGCATTAACTTGTTAATTAATTAGGATTTGTGCACTAAAATTTCGTTTAACTTGTGTTATATGCCCATTTTTAACACAGGAATTTGAAGATTGGCTCAAGTTTCATGCTTGTTCGGTAGGGTTGCGGCTACTTCTATAGCTGTGCTGGTTATGGAAAACTGGCTTCAATGAATCCAAAGAGCTTGAGGTACATTCAAATTTGCTTATTCGCTATTAGATAAGTGTGTAGACCAGGAGAAAGTGACTTCACTTTCATTATTTAATGAAGAGATGTGGAGCCAATATGGGTTAGATGAGGCCATTAGACACACTCTCAACCCAGCGGAGTAGGGAAATTGTGATATCCCACGTTGACGGGAGAGGAGAACGAAACACTCTTTATAACGGTGTGGAAACTTTTCCCTAGCAGATGCCTTTTAAAGTCTTGAAAGAAAAACCCGAAGAGGACAATATCTACTAGTTGTGGGTTGTTTGTCGAATGCAAGAGTTTTTGGTGGCTTAAAAAATGGACATCTGAAGTACTTAGTTTCCTTAGTAATTTGGATCTGGGCCAGTATTCACCTAGGTGGACTTAAACGGGCTATCGGGCTAAGGTCTGAAAACCCAGTGGTGCGCATTTGGTTCTTCCAGTCCTCTATTTTTCTTGAACTTCTATAAGACAGAGATAAAGTAAGCCGCCAGTCCACAGCTTCCCATTACTTGCTTGGTTTGTGCCAGTTTCGATATTGAAAGATTTCTCATTCTCTCACAGTCCTTCCATGTTGTCGGTTGTTGAGAAGCACTTCTCAGTCTCCACTAACATTTGTCCTCCACATTCTCTCCTTCTTCCTCCCCTCTGCTGTCCACTTCATTCCCGTATCAAGAACTCTTCAGTCTGTCTGATCCTGCAATTATTTTTTCTCATCAGATTCCTTAATTATAACTCTCCCTTTTGTCTCCCAAATGATCTCTTCCTTCATTTCCTCCCCATAATTCTCTTTTCTTTCTTTCACTTTACAGCATAATAGCCAGTTGCTGCTCCTTTAAGTTTCTGCGATGCCGAACATAATCCATATTTGTTTTGTTCACATGGGAAAACATTCCCTTCTCAAATCATTGTAAAATCTACGATTATCAAAAGCAGGACAAAGCATTCTTGGTGGAACAGTAGCATGTCTGTAACTCCCCTGTTTTCCTCCATCTCCATTATCTGTATATTACAAATTCAACAGGAATTTCCCCTTTTTCTCACTTTCCCTTGTTTCAAGACACTAAACTTAATCAAACTCATTCAATTAACCACATCATGGCCATGATTTTGCAGCAAAATTGATAACTTGGGCAGGCAATCTCTATGAACAGCCACATTCACTGGAGATACAAAAGGATTGATGCTTTGTGCCTCTGCTCAAATCGTAGCCCGTAGGTTGTTTCTTTCATGCCACTCCAGAAACATTCAAATAAGTTCAGGTTCAAGGTTTCTATTTACTAAAACTAACAGAGACTGTACTTCATACTTGAATTGAGAGAGGGAGGAAATCTCCGAACATCTGAATCTCTTCCATTCATATTAACACATTAGGAATTATAGTTTTACATCCACCATACTACAGTACATAGGCAAGGAAAAAAAAAAAAGAAAAAGTTAATTAAAAAATTAAAATCTAACATCGGCATATCGTGACTCGGTTTCACATGTATAAGTATACCCCCAAACATCATAATCTCTATATGCGAGACTTCTCACTAGCATGGCAATGGTCGTAGATTTTGCAAAGTACAGCCTCTTTCAAACTTTAGAAAAACACCCCTTGCCAACTTTCTTCTGTTTCCCTCACAAGTATTGCTCGTGTATCCTGGCTCGATTCTCTTCCCACCACACTTTTGCATGCATCTCCCCGAACTTTTCCCGGCTACAAAATTCAAAATGGACTTGACAATAAGAATTCTGGCTACGAAAATGAACTTGAATAAAACAAATCATGCTATTCCCCGACATAATGAACGCTGCTAGAAAGCCTGTGGGTCACCTGGCCTAGGACTACCTTTAGTTTAAATTATCTCCAAACGTACAAGAGCATGAAAGTAGACTAGCTGGAGGGACCATTAGAGCCATAGCAACCCATAAGACAGAACATTTGAAGAGATTTACAGGATATCTAAAAGTGTTATCTAGGGCAGAGGAATGAGTATTTTTATGACTATAGCATTATATCACCTCATAAATAGGCAGAAAGAGATCTTAATGACCATGATATATAATTGGCTTTTGATTGATTTTGGATCTATACTCGAGAAAAATATACTGGGTGGCAATATTAACTTCATGATATTTAGTCGATGTTTGGAAGACTTTCTGAAAGCAATGTTCGTTAACTACTTCCAAATCAAGATTATGTAGTATCTTCATACCTGAATCTGACTCTTCTTAGTTCCCTTTTGCCGCCAGGCAATGCTCTGATTGTAATATAAACCCCTGGTTCATCCTGTTCAACCCATTCAGACTCAAGATCACTAGCATTGCTGATGGATAGCTCTCCTGAACGATCTGCATCCCTAGATGAACTGCTTCTCATGGATGCATCAATGGAAGATGTTTCCGTCTTGGCACCACTGATGCTAGAGAGTTTCGGAGTAGAGGTCAGACCTGAATCTTGGTACTGGCGATACTGCATTGGCTGGTATTCAAGTGAATCTGAGGATGAATAG

mRNA sequence

ATGAGAGCGGATAATCATCTTTCTATTATCGGCAAGAGACTCCGATTTTTTTCTCTCTCCTGCTGTCGCGTTTTCACCGCACCGAATGCGATTCCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCTTCTGGTGCAGATCCTAGATGTCAAGATGATCGGTAACGCGCAGGAGAGACTTATCAGTGAAATTGAGAGTGCTGAAACCAACTCTATTTTGGATGTTGTTAGTATGGTAACATCTACCAATCCATCAATTCCTGTGTTGAGCAAAACTGGTATGGAAACTCAAAGAAGAGTTCACAATTTGAAGGATGCATCTGGCAAGAGGTGTAGAGGAGTTGTGATTACAGATATCTTGTTCATGCCCAAATCCAAGACCATACTGGAGTCTGGTGAAGAGATTCTAGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTTGAATGCCGTGGTGGGCTTCGGGCACATCAAGAAGATAAAGCAAACGTGGTCTACATTTCCGCAGGAGCCGCATATTACACACATAACACAGAAACAACCACTACAGACAATGGAACATGAGGGACGAAGAATGGAAAATGATAAGATAATTGGTCGAATGTCATCCTCCGACACTCAGGTCCGCTTTACGGGGTCGAAATTGGAGACACCGATAATTGCACCCAAGATAGCAGTGACAACTACTCCACCGGCGGCAATACTGAGCAAGAAATTCTTGAGAGAAGGGGTAACTCCAGCTCCTGCAGCTTCAGCCACCTCAGGAAGCACCATGGAGGCCGTCAGTGCAGTTGCAGCCAATCCAGCAATTGCCTTCTCCTTCACAGAAGCCCGCACTTGGAACTTGGCGCTGCTGGATTTTGATGCAGCAATTGGCTTGTTGGAAGGCCTCAAAGGCAATGCCTTAGCGAAGGCCTCGGTGCTCCTCACTCTCTTCTGGGTCGCATTAGGTTGCGGCTACTTCTATAGCTGTGCTGGTTATGGAAAACTGGCTTCAATGAATCCAAAGAGCTTGAGAGATAAAGTAAGCCGCCAGTCCACAGCTTCCCATTACTTGCTTGACTCAAGATCACTAGCATTGCTGATGGATAGCTCTCCTGAACGATCTGCATCCCTAGATGAACTGCTTCTCATGGATGCATCAATGGAAGATGTTTCCGTCTTGGCACCACTGATGCTAGAGAGTTTCGGAGTAGAGGTCAGACCTGAATCTTGGTACTGGCGATACTGCATTGGCTGGTATTCAAGTGAATCTGAGGATGAATAG

Coding sequence (CDS)

ATGAGAGCGGATAATCATCTTTCTATTATCGGCAAGAGACTCCGATTTTTTTCTCTCTCCTGCTGTCGCGTTTTCACCGCACCGAATGCGATTCCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCTTCTGGTGCAGATCCTAGATGTCAAGATGATCGGTAACGCGCAGGAGAGACTTATCAGTGAAATTGAGAGTGCTGAAACCAACTCTATTTTGGATGTTGTTAGTATGGTAACATCTACCAATCCATCAATTCCTGTGTTGAGCAAAACTGGTATGGAAACTCAAAGAAGAGTTCACAATTTGAAGGATGCATCTGGCAAGAGGTGTAGAGGAGTTGTGATTACAGATATCTTGTTCATGCCCAAATCCAAGACCATACTGGAGTCTGGTGAAGAGATTCTAGGTGTTTCAGCCAAGGAGTTGTACATGTTGAAGTTGAATGCCGTGGTGGGCTTCGGGCACATCAAGAAGATAAAGCAAACGTGGTCTACATTTCCGCAGGAGCCGCATATTACACACATAACACAGAAACAACCACTACAGACAATGGAACATGAGGGACGAAGAATGGAAAATGATAAGATAATTGGTCGAATGTCATCCTCCGACACTCAGGTCCGCTTTACGGGGTCGAAATTGGAGACACCGATAATTGCACCCAAGATAGCAGTGACAACTACTCCACCGGCGGCAATACTGAGCAAGAAATTCTTGAGAGAAGGGGTAACTCCAGCTCCTGCAGCTTCAGCCACCTCAGGAAGCACCATGGAGGCCGTCAGTGCAGTTGCAGCCAATCCAGCAATTGCCTTCTCCTTCACAGAAGCCCGCACTTGGAACTTGGCGCTGCTGGATTTTGATGCAGCAATTGGCTTGTTGGAAGGCCTCAAAGGCAATGCCTTAGCGAAGGCCTCGGTGCTCCTCACTCTCTTCTGGGTCGCATTAGGTTGCGGCTACTTCTATAGCTGTGCTGGTTATGGAAAACTGGCTTCAATGAATCCAAAGAGCTTGAGAGATAAAGTAAGCCGCCAGTCCACAGCTTCCCATTACTTGCTTGACTCAAGATCACTAGCATTGCTGATGGATAGCTCTCCTGAACGATCTGCATCCCTAGATGAACTGCTTCTCATGGATGCATCAATGGAAGATGTTTCCGTCTTGGCACCACTGATGCTAGAGAGTTTCGGAGTAGAGGTCAGACCTGAATCTTGGTACTGGCGATACTGCATTGGCTGGTATTCAAGTGAATCTGAGGATGAATAG

Protein sequence

MRADNHLSIIGKRLRFFSLSCCRVFTAPNAIPAIVAGDVNSKLLVQILDVKMIGNAQERLISEIESAETNSILDVVSMVTSTNPSIPVLSKTGMETQRRVHNLKDASGKRCRGVVITDILFMPKSKTILESGEEILGVSAKELYMLKLNAVVGFGHIKKIKQTWSTFPQEPHITHITQKQPLQTMEHEGRRMENDKIIGRMSSSDTQVRFTGSKLETPIIAPKIAVTTTPPAAILSKKFLREGVTPAPAASATSGSTMEAVSAVAANPAIAFSFTEARTWNLALLDFDAAIGLLEGLKGNALAKASVLLTLFWVALGCGYFYSCAGYGKLASMNPKSLRDKVSRQSTASHYLLDSRSLALLMDSSPERSASLDELLLMDASMEDVSVLAPLMLESFGVEVRPESWYWRYCIGWYSSESEDE

Homology

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BLAST of CmoCh12G013460 vs. ExPASy Swiss-Prot
Match: Q9SKI4 (Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.8e-11
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 59  RLISEIESAETNSILDVVSMVTSTNPSIPVLSKTGMETQRRVHNLKDASGK 110
           R IS+IE+AE N+ILDV+ +VTS NPS+P+L K GMET RR+ NLKD SGK
Sbjct: 318 RPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGK 368

HSP 2 Score: 44.3 bits (103), Expect = 4.0e-03
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 24 VFTAPNAIPAIVAGDVNSKLLVQILDVKMIGNAQER 60
          V   PNAI AI  GDVN K L+Q+L++KMIG +QER
Sbjct: 3  VSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQER 38

[Close]

BLAST of CmoCh12G013460 vs. ExPASy Swiss-Prot
Match: Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-07
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 38  DVNSKLLVQILDVKMIGNAQERLISEIESAETNSILDVVSMVTSTNPSIPVLSKTGMETQ 97
           D NS +  Q  D         R I+EIE A+ N+ILD++ +VTS NP   +  K GMETQ
Sbjct: 319 DENSSIPTQRFDF--------RPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQ 378

Query: 98  RRVHNLKDASGK 110
           +R  NLKD SG+
Sbjct: 379 KRTMNLKDMSGR 382

[Close]

BLAST of CmoCh12G013460 vs. ExPASy TrEMBL
Match: A0A7J7G758 (Replication protein A subunit OS=Camellia sinensis OX=4442 GN=HYC85_026397 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-24
Identity = 85/186 (45.70%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 130 ESGEEILGVSAKELYMLKLNAVVGFGHIKKIKQTWSTFPQEPHITHITQKQPLQTMEHEG 189
           ESGEEI+G SAKELY LK                   + ++  +      +     E+  
Sbjct: 529 ESGEEIVGCSAKELYFLK-------------------YEEQDDVRFAEIIRGSLFREYLF 588

Query: 190 RRMENDKIIGRMSSSDTQVRFTGSKLETPIIAPKIAVTTTPPAAILSKKFLREGVTPAPA 249
           R     KI   M   + +   TGSKL TP   P + V+TTPPA +LSKKFLREG TP PA
Sbjct: 589 RL----KIKEEMYGDEQRPLLTGSKLATPTTRPTMTVSTTPPATMLSKKFLREGETPDPA 648

Query: 250 ASATSGSTMEAVSAVAANPAIAFSFTEARTWNLALLDFDAAIGLLEGLKGNALAKASVLL 309
           ASATSG TMEAV A A NP   FSF EA T N  ++ FD     LEGL G+ L KA+ L 
Sbjct: 649 ASATSGITMEAVIAAAVNPVTTFSFIEALTSNFPMVVFDPTTAALEGLTGSGLKKAAELG 691

Query: 310 TLFWVA 316
            LFWVA
Sbjct: 709 NLFWVA 691

[Close]

BLAST of CmoCh12G013460 vs. ExPASy TrEMBL
Match: A0A7J7G758 (Replication protein A subunit OS=Camellia sinensis OX=4442 GN=HYC85_026397 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.3e-08
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 59  RLISEIESAETNSILDVVSMVTSTNPSIPVLSKTGMETQRRVHNLKDASGK 110
           R ISEIE AE NSI+D++ +V S NPS+P+L K GMETQRR+ NLKD SG+
Sbjct: 298 RPISEIEVAENNSIIDIIGVVISVNPSVPILRKNGMETQRRILNLKDQSGR 348

HSP 2 Score: 53.1 bits (126), Expect = 3.2e-03
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 28 PNAIPAIVAGDVNSKLLVQILDVKMIGNAQER 60
          PNAIPAI AGDVNSK +VQ+LD+K+IGN QER
Sbjct: 7  PNAIPAINAGDVNSKPVVQVLDIKLIGNNQER 38

HSP 3 Score: 113.2 bits (282), Expect = 2.6e-21
Identity = 113/298 (37.92%), Postives = 138/298 (46.31%), Query Frame = 0


Query: 28  PNAIPAIVAGDVNSKLLVQILDVKMIGNAQER---LISEIESAETNSILDVVSMVTSTNP 87
           PNAI AI  GDVNSK LVQ+LD+K+IG  QER   L+S+      +++     + T  N 
Sbjct: 7   PNAIAAINGGDVNSKPLVQVLDIKLIGTTQERYRLLLSD------SALTQHAMLATQLND 66

Query: 88  SIPVLSKTGMETQRRVHNLKDASGKRCRGVVITDILFMPKSKTILESGEEILGVSAKELY 147
            I    K+G   +  V  L D     C  V    I+ +   +TI+   E           
Sbjct: 67  QI----KSGRVKKGSVVQLIDYI---CSTVQNRKIIVVLNMETIIPDCE----------- 126

Query: 148 MLKLNAVVGFGHIKKIKQTWSTFPQEPHITHITQKQPLQTMEHEGRRMENDKIIGRMSSS 207
                 +VG   +     T              QK    T    G R  N  I  R    
Sbjct: 127 ------IVGNPRMCSESDT------------AAQKTLPNTSNGNGERTINSSIPVRNPVQ 186

Query: 208 DTQ--------------VRFTGSKLETPIIAPKIAVTTTPPAAILSKKFLREGVTPAPAA 267
           +TQ              VR TGSKL TPI AP I  +TTPPA IL +KFLREG TP PAA
Sbjct: 187 NTQSFQSAVGPQYQQHSVRLTGSKLATPITAPTITPSTTPPATILRRKFLREGDTPDPAA 246

Query: 268 SATSGSTMEAVSAVAANPAIAFSFTEARTWNLALLDFDAAI-GL-LEGLKGNALAKAS 307
           SATSG T+EAV A A +P +AFS  EA T N    DFDA   GL  + L G+ L K S
Sbjct: 247 SATSGITIEAVRAAAVSPVMAFSLREALTSNFP-PDFDAPTKGLFFDSLAGSGLKKHS 261

[Close]

BLAST of CmoCh12G013460 vs. ExPASy TrEMBL
Match: A0A498KLC5 (Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_018175 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.4e-20
Identity = 117/320 (36.56%), Postives = 160/320 (50.00%), Query Frame = 0


Query: 28  PNAIPAIVAGDVNSKLLVQILDVKMIGNAQER---LISEIESAETNSILDVVSMVTSTNP 87
           PNAI A++ GDVN K LVQ++D+K+IG  QER   ++S+  S +   I   ++    TN 
Sbjct: 7   PNAIAAMIGGDVNLKPLVQVVDIKLIG-TQERYRFMVSDGVSCQHAMISSQLNDRIKTN- 66

Query: 88  SIPVLSKTGMETQRRVHNLKDASGKRCRGVVITDILFMPKSKTILESGEEILGVSAKELY 147
                 + G   Q   + +      R   + ++++ F     + +ES  E++ +    L 
Sbjct: 67  ----RVQIGSVVQLTEY-ISTVLQNRQVLIHLSELRFW-NQMSAMESESELIKLVIVVLN 126

Query: 148 M--LKLNA-VVG----FGHIKKIKQT--WSTFPQEPHITHITQKQPLQTMEHEGRRMEND 207
           M  + LN+ V+G    +G      Q    +   Q     H+  + P+  +++        
Sbjct: 127 METIILNSDVIGNPKPYGPPDSAAQNALRNGSVQRSAGNHMISQNPVHNVQN-------- 186

Query: 208 KIIGRMSSSDTQVRFTGSKLETPIIAPKIAVTTTPPAAILSKKFLREGVTPAPAASATSG 267
             +   S S+       SKL TP  AP I  TTTPPAA+LSKKFLREG TP  AASATSG
Sbjct: 187 --LRPTSHSERPSVRPRSKLATPTTAPTITTTTTPPAAMLSKKFLREGETP-EAASATSG 246

Query: 268 STMEAVSAVAANPAIAFSFTEARTWNLALLDFDAA-IGLLEGLKGNALAKASVL-LTLFW 327
            T+EAVSA A  P  AFSF EA TW+L  LDFDAA     EGL G  L K S     LFW
Sbjct: 247 ITIEAVSAAAVIPVTAFSFKEALTWSLP-LDFDAAGANAFEGLSGIGLNKLSAEDWILFW 306

Query: 328 VALGCGYFYSCAGYGKLASM 334
           VAL  G     A    + S+
Sbjct: 307 VALVNGMAIVTAAVAAIFSL 306

[Close]

BLAST of CmoCh12G013460 vs. ExPASy TrEMBL
Match: A0A6A4KXL9 (Replication protein A subunit (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_19269 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-19
Identity = 84/197 (42.64%), Postives = 103/197 (52.28%), Query Frame = 0


Query: 130 ESGEEILGVSAKELYMLKLNAVVGFG----------HIKKIKQTWSTFPQEPHITHITQK 189
           ESG+EILG  AK+L+ LK    V F           ++ ++K     +  E  +     K
Sbjct: 464 ESGKEILGCPAKDLFFLKYEEDVKFAEIIRGSLFAEYLFRLKVKEELYGDEERVKITVVK 523

Query: 190 QPLQTMEHEGRRMENDKIIGRMSSSDTQVRFTGSKLETPIIAPKIAVTTTPPAAILSKKF 249
                   E +RM +  +I +M  +       GSKLETP  AP I  +T PPA +LSKKF
Sbjct: 524 AEKVNYSVESKRMLD--LIAKMIET-----ILGSKLETPTTAPIITTSTMPPAPMLSKKF 583

Query: 250 LREGVTPAPAASATSGSTMEAVSAVAANPAIAFSFTEARTWNL-ALLDFDAAIGLLEGLK 309
           LREG T   AASATSG  MEAV+AVA NP  AFS +EA T N   + D   A   LEGL 
Sbjct: 584 LREGET---AASATSGIIMEAVNAVAVNPVTAFSLSEALTTNFPVVFDATTADAALEGLT 643

Query: 310 GNALAKASVLLTLFWVA 316
           GN L  A     LFWVA
Sbjct: 644 GNGLKAAPEAGNLFWVA 650

[Close]

BLAST of CmoCh12G013460 vs. ExPASy TrEMBL
Match: A0A6A4KXL9 (Replication protein A subunit (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_19269 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-05
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0


Query: 59  RLISEIESAETNSILDVVSMVTSTNPSIPVLSKTGMETQRRVHNLKDASGK 110
           R ISEIE A  NSI+DV+ +VT+ NPS+ ++ K GMET+RR+ NL D S +
Sbjct: 223 RPISEIEIAXNNSIIDVIGIVTAVNPSVSIMRKNGMETKRRILNLNDQSSR 273

HSP 2 Score: 97.4 bits (241), Expect = 1.5e-16
Identity = 66/112 (58.93%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 208 VRFTGSKLETPIIAPKIAVTTTPPAAILSKKFLREGVTPAPAASATSGSTMEAVSAVAAN 267
           VR TGSKLETP  AP IA +TTPPAA+LSKK LR+G  P PAASATSG T+EAV+A A +
Sbjct: 335 VRLTGSKLETPTTAPIIATSTTPPAAMLSKKLLRDGDMPGPAASATSGITIEAVNAAAVS 394

Query: 268 PAIAFSFTEARTWNLAL-LDFDAAIGLLEGLKGNALAKASVL---LTLFWVA 316
           P  AFSF EA T NLA  LDF      ++GLK + L K   L     LFW A
Sbjct: 395 PVTAFSFKEACTSNLAPDLDFVEKPTAIDGLKVSGLRKDWELGGCSNLFWDA 446

[Close]

BLAST of CmoCh12G013460 vs. TAIR 10
Match: AT2G06510.2 (replication protein A 1A )

HSP 1 Score: 70.1 bits (170), Expect = 4.8e-12
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 59  RLISEIESAETNSILDVVSMVTSTNPSIPVLSKTGMETQRRVHNLKDASGK 110
           R IS+IE+AE N+ILDV+ +VTS NPS+P+L K GMET RR+ NLKD SGK
Sbjct: 295 RPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGK 345

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BLAST of CmoCh12G013460 vs. TAIR 10
Match: AT2G06510.1 (replication protein A 1A )

HSP 1 Score: 70.1 bits (170), Expect = 4.8e-12
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 59  RLISEIESAETNSILDVVSMVTSTNPSIPVLSKTGMETQRRVHNLKDASGK 110
           R IS+IE+AE N+ILDV+ +VTS NPS+P+L K GMET RR+ NLKD SGK
Sbjct: 318 RPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGK 368

HSP 2 Score: 44.3 bits (103), Expect = 2.8e-04
Identity = 22/36 (61.11%), Postives = 27/36 (75.00%), Query Frame = 0


Query: 24 VFTAPNAIPAIVAGDVNSKLLVQILDVKMIGNAQER 60
          V   PNAI AI  GDVN K L+Q+L++KMIG +QER
Sbjct: 3  VSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQER 38

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BLAST of CmoCh12G013460 vs. TAIR 10
Match: AT4G19130.1 (Replication factor-A protein 1-related )

HSP 1 Score: 45.1 bits (105), Expect = 1.7e-04
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 59  RLISEIESAETNSILDVVSMVTSTNPSIPVLSKTGMETQRRVHNLKDASGK 110
           R I +IES E N I+DV+ +V+S +P++ +  K G  T +R   LKD SG+
Sbjct: 349 RTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGR 399

The following BLAST results are available for this feature:

BLAST of CmoCh12G013460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKI4	6.8e-11	66.67	Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=37...	[more]
Q6YZ49	2.7e-07	45.83	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]

BLAST of CmoCh12G013460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7G758	7.3e-24	45.70	Replication protein A subunit OS=Camellia sinensis OX=4442 GN=HYC85_026397 PE=3 ...	[more]
A0A7J7G758	7.3e-08	64.71	Replication protein A subunit OS=Camellia sinensis OX=4442 GN=HYC85_026397 PE=3 ...	[more]
A0A498KLC5	6.4e-20	36.56	Rep-A_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_018175 PE=...	[more]
A0A6A4KXL9	1.4e-19	42.64	Replication protein A subunit (Fragment) OS=Rhododendron williamsianum OX=262921...	[more]
A0A6A4KXL9	9.9e-05	54.90	Replication protein A subunit (Fragment) OS=Rhododendron williamsianum OX=262921...	[more]

BLAST of CmoCh12G013460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06510.2	4.8e-12	66.67	replication protein A 1A	[more]
AT2G06510.1	4.8e-12	66.67	replication protein A 1A	[more]
AT4G19130.1	1.7e-04	43.14	Replication factor-A protein 1-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031657	Replication protein A, OB domain	PFAM	PF16900	REPA_OB_2	coord: 61..112 e-value: 3.3E-7 score: 30.2
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 27..59
None	No IPR available	PANTHER	PTHR23273:SF47	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A	coord: 27..59
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 59..111
None	No IPR available	PANTHER	PTHR23273:SF47	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A	coord: 59..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013460.1	CmoCh12G013460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003676	nucleic acid binding