CmoCh12G013190 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger CCCH domain-containing protein 20-like
Location	Cmo_Chr12: 11538984 .. 11540171 (+)
RNA-Seq Expression	CmoCh12G013190
Synteny	CmoCh12G013190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATCGATGAGCAACCTAACCGCCCTAACCAGAAGCTTCATGTTCCGCCATGGACGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCACTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTGCCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGCTTCAGGTCGGGAGGCGGATTCTCCGGTGGATACGTATTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTTTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACGGCGTGTGCCGATTTTAGGAAGGGGAACTGTACTAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCAGAGCAACTTAGGATTTTGCCTCAACAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCTATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCAATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCAGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTTGCGGCGAGGAACAGGCGATGGCGCGAGTGGAATCCGGGAGAGACTTACGAGCAAAAATGCTGGAGAAATTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAACCCGGCGGCGGAAGTGTGGACGTTGGTTGGATCTCGGAGCTTCTCAAGTAA

mRNA sequence

ATGATGATCGATGAGCAACCTAACCGCCCTAACCAGAAGCTTCATGTTCCGCCATGGACGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCACTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTGCCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGCTTCAGGTCGGGAGGCGGATTCTCCGGTGGATACGTATTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTTTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACGGCGTGTGCCGATTTTAGGAAGGGGAACTGTACTAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCAGAGCAACTTAGGATTTTGCCTCAACAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCTATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCAATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCAGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTTGCGGCGAGGAACAGGCGATGGCGCGAGTGGAATCCGGGAGAGACTTACGAGCAAAAATGCTGGAGAAATTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAACCCGGCGGCGGAAGTGTGGACGTTGGTTGGATCTCGGAGCTTCTCAAGTAA

Coding sequence (CDS)

ATGATGATCGATGAGCAACCTAACCGCCCTAACCAGAAGCTTCATGTTCCGCCATGGACGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCACTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTGCCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGCTTCAGGTCGGGAGGCGGATTCTCCGGTGGATACGTATTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTTTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACGGCGTGTGCCGATTTTAGGAAGGGGAACTGTACTAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATAGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCAGAGCAACTTAGGATTTTGCCTCAACAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCTATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATCGAGTCTCCGCCTCAATCGCCAATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCAGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTTGCGGCGAGGAACAGGCGATGGCGCGAGTGGAATCCGGGAGAGACTTACGAGCAAAAATGCTGGAGAAATTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAACCCGGCGGCGGAAGTGTGGACGTTGGTTGGATCTCGGAGCTTCTCAAGTAA

Protein sequence

MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK

Homology

[Close]

BLAST of CmoCh12G013190 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.5e-97
Identity = 200/400 (50.00%), Postives = 253/400 (63.25%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSP 60
           MMI E     N  +H+PPW   ED        SP  G S                     
Sbjct: 1   MMIGESHRGFNPTVHIPPWPLSEDLTVSDIYGSPDGGSS--------------------- 60

Query: 61  FYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSH 120
             + EALA LQ+YLPS E + +SD D SG   DSP+D Y+ D FRMYEFK+++C RGRSH
Sbjct: 61  --MMEALAELQRYLPSNEPDPDSDPDLSG--PDSPIDAYTCDHFRMYEFKVRRCARGRSH 120

Query: 121 DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYR 180
           DWTECP+AHPGEKARRRDPRK++YSGTAC +FRKG C +GDACEF+HGVFECWLHPARYR
Sbjct: 121 DWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYR 180

Query: 181 TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYD--GSPLRQAIEACAKQMP 240
           TQPCKDG +CRRRVCFFAH+P+Q+R+LP QSP     + S+D     +R+A +       
Sbjct: 181 TQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSP---DRVDSFDVLSPTIRRAFQFS----- 240

Query: 241 YLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSS 300
            +S S  S PVSPR +S     +   L+R   ++  N++VASLR+LQL+K      S SS
Sbjct: 241 -ISPSSNSPPVSPRGDSDSSCSL---LSRSLGSNLGNDVVASLRNLQLNK---VKSSLSS 300

Query: 301 LWNVQVG--SPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGR 360
            +N Q+G     FGSP  S    GF SLP TPT P   +++ W+ G  EE AM RVESGR
Sbjct: 301 SYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPG--FMNIWENGLEEEPAMERVESGR 358

Query: 361 DLRAKMLEKLRKENSVAC--GDQEKPGGGSVDVGWISELL 395
           +LRA++ EKL KEN +     D ++  G + DVGW+S+L+
Sbjct: 361 ELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVGWVSDLV 358

[Close]

BLAST of CmoCh12G013190 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 2.1e-91
Identity = 199/404 (49.26%), Postives = 247/404 (61.14%), Query Frame = 0


Query: 16  VPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSPFYLQEALAMLQQYLP 75
           VPPW           SH P SG    G G G        GD  +P+     +A L+ YLP
Sbjct: 11  VPPW-----------SHLPVSGVDVLGGGGG-------GGDEMTPY----VIAALRDYLP 70

Query: 76  SKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKAR 135
           + +  V +D +       + VD Y+ D+FRMYEFK+++C RGRSHDWTECPFAHPGEKAR
Sbjct: 71  ANDVGVGADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKAR 130

Query: 136 RRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVC 195
           RRDPRKY+YSGTAC DFRKG C +GDACE+AHGVFECWLHPARYRTQPCKDGT+CRRRVC
Sbjct: 131 RRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVC 190

Query: 196 FFAHTPEQLRILP--QQSPRSTSSIP---SYDGSPLRQAIEACAKQMPYLSSSGTST--- 255
           FFAHTP+QLR+LP  Q SPRS +S P   SYDGSPLR+           +SSS TST   
Sbjct: 191 FFAHTPDQLRVLPAQQSSPRSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMS 250

Query: 256 -PVSPRIESPPQSP----MFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNV 315
            P SP  ESPP SP      R  + P   S +N+++AS R L+L+K      SPS  W+ 
Sbjct: 251 PPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNK---VKSSPSGGWSY 310

Query: 316 QVGSPVFGSPGESSARSGFSSLPDTPTPPAVRY---------LDFWDLG-CGEEQAMARV 375
              S V+GSP    A +G  SLP TP                L+  DLG  G+E+ + RV
Sbjct: 311 PSSSAVYGSP---KAATGLYSLPTTPLASTATVTTASSFMPNLEPLDLGLIGDEEPVQRV 370

Query: 376 ESGRDLRAKMLEKLRKENSVACGDQE--KPGGGSVDVGWISELL 395
           ESGR LR K+ E+L ++ +++ GD       G  +DV W+S+L+
Sbjct: 371 ESGRALREKVFERLSRDGAIS-GDATAFATAGVGLDVDWVSDLI 385

[Close]

BLAST of CmoCh12G013190 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 8.2e-91
Identity = 187/336 (55.65%), Postives = 228/336 (67.86%), Query Frame = 0


Query: 65  EALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTE 124
           EALA LQ+YLPS E + ES  D  G   DSP+D YS D FRMY+FK+++C RGRSHDWTE
Sbjct: 43  EALAGLQRYLPSNEPDPESYPDLLG--PDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTE 102

Query: 125 CPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYRTQPC 184
           CP+AHPGEKARRRDPRKY+YSGTAC DFRKG C KGD+CEFAHGVFECWLHPARYRTQPC
Sbjct: 103 CPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPC 162

Query: 185 KDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYD-GSPLRQAIEACAKQMPYLSSS 244
           KDG +C R++CFFAH+P+QLR L  +SP     + S+D  SP+R    A A Q+     S
Sbjct: 163 KDGGNCLRKICFFAHSPDQLRFLHTRSP---DRVDSFDVSSPIR----ARAFQLSISPVS 222

Query: 245 GTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQ 304
           G S P+SPR +S   SPM +SL+R   + SIN++V S R+LQ           +S+ +  
Sbjct: 223 G-SPPMSPRADS-ESSPMTQSLSRSLGSCSINDVVPSFRNLQF----------NSVKSFP 282

Query: 305 VGSPV--FGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMAR-VESGRDLRA 364
             +P+  FGSP  S    GF SLP TPT P    LD W+ G  EE  M R VESGR+LR 
Sbjct: 283 RNNPLFGFGSPRGSILGPGFQSLPTTPTRPG--NLDIWEYGLEEEPVMERVVESGRELRE 342

Query: 365 KMLEKLRKENSV--ACGDQEKPGGGSVDVGWISELL 395
           KM EKL KEN +     D ++  G + DVGW+S+LL
Sbjct: 343 KMREKLHKENCMDRVAQDPDQNLGEAPDVGWVSDLL 355

[Close]

BLAST of CmoCh12G013190 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.7e-83
Identity = 194/417 (46.52%), Postives = 238/417 (57.07%), Query Frame = 0


Query: 15  HVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSPFYLQEALAMLQQYL 74
           H PPW          +  SP SG  G G        G  +    +P++L   L  L+ YL
Sbjct: 9   HAPPW--------QQHVASPVSGVEGGG--------GRESEVVAAPYHL---LDTLRHYL 68

Query: 75  PSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKA 134
           PS EA    D + +   A + VD Y+ D+FRMYEFK+++C RGRSHDWTECPFAHPGEKA
Sbjct: 69  PSNEAAAAEDEEEAAAVA-AAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKA 128

Query: 135 RRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRV 194
           RRRDPR+Y YSGTAC DFRKG C +GDACEFAHGVFECWLHPARYRTQPCKDGT+CRRRV
Sbjct: 129 RRRDPRRYCYSGTACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRV 188

Query: 195 CFFAHTPEQLRILPQQSPRSTSS----------------IPSYDGSPLRQAIEACAKQMP 254
           CFFAHTP+QLR+LP    + ++S                  SYDGSPLR+          
Sbjct: 189 CFFAHTPDQLRVLPPSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKS 248

Query: 255 YLSSSGTST----PVSPRIESPPQSPMFRSLNRPHA----TSSINEMVASLRSLQLHKEL 314
            +SSS TST    P SP  ESPP SP      R  A     S +N++  SLR L+    L
Sbjct: 249 IMSSSPTSTLVSPPRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLR----L 308

Query: 315 GKVQSPSSLWNVQVGSPVFGSPGE--SSARSGFSSLPDTPT----------PPAVRYLDF 374
           G  +S  S  +       +GSP    ++A +   SLP TPT            A   ++ 
Sbjct: 309 GSPRSAPSCASFLPAGYQYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTTASGATVTVEP 368

Query: 375 WDLG-CGEEQAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELL 395
            DLG   EEQ M RVESGR LR K+ E+L KE +V+        G + DVGW+S+L+
Sbjct: 369 LDLGLIEEEQPMERVESGRALREKVFERLSKEATVSTDAAAAAAGVAPDVGWVSDLI 401

[Close]

BLAST of CmoCh12G013190 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 2.0e-73
Identity = 168/376 (44.68%), Postives = 214/376 (56.91%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGD-GYS 60
           MMI E  NRP+  +H+P W  + DP +           + S   S V  +  S  D  +S
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTA-----------TISSPFSSVNLN--SVNDYPHS 60

Query: 61  PFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRS 120
           P    ++ A L +YLPS E   +SD  +SG E+    D++SSD+FR+YEFKI++C RGRS
Sbjct: 61  PSPYLDSFASLFRYLPSNELTNDSD-SSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRS 120

Query: 121 HDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARY 180
           HDWTECPFAHPGEKARRRDPRK++YSGTAC +FRKG+C +GD+CEF+HGVFECWLHP+RY
Sbjct: 121 HDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRY 180

Query: 181 RTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPY 240
           RTQPCKDGTSCRRR+CFFAHT EQLR+LP               SP              
Sbjct: 181 RTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSP-------------- 240

Query: 241 LSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSL 300
            +S   S   SP  ESPP SP            S  E++AS+R +QL+            
Sbjct: 241 -TSILVSPSFSPPSESPPLSP------------STGELIASMRKMQLNG----------- 300

Query: 301 WNVQVGSPVFGSPGESSARSGFSSL---PDTPTPPAVRYLDFWDLGCGEEQAMARVESGR 360
                G   + SP  S+ R  FSS        T P +R  +       E  AM  VESG+
Sbjct: 301 -----GGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEI-----EEAPAMEFVESGK 314

Query: 361 DLRAKMLEKLRKENSV 373
           +LRA+M  +L +ENS+
Sbjct: 361 ELRAEMYARLSRENSL 314

[Close]

BLAST of CmoCh12G013190 vs. ExPASy TrEMBL
Match: A0A6J1FG51 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111443876 PE=4 SV=1)

HSP 1 Score: 816.2 bits (2107), Expect = 5.8e-233
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSP 60
           MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSP
Sbjct: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSP 60

Query: 61  FYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSH 120
           FYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSH
Sbjct: 61  FYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSH 120

Query: 121 DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYR 180
           DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYR
Sbjct: 121 DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYR 180

Query: 181 TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYL 240
           TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYL
Sbjct: 181 TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYL 240

Query: 241 SSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLW 300
           SSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLW
Sbjct: 241 SSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLW 300

Query: 301 NVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRA 360
           NVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRA
Sbjct: 301 NVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRA 360

Query: 361 KMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 396
           KMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK
Sbjct: 361 KMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 395

[Close]

BLAST of CmoCh12G013190 vs. ExPASy TrEMBL
Match: A0A6J1HL92 (zinc finger CCCH domain-containing protein 20-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465573 PE=4 SV=1)

HSP 1 Score: 800.8 bits (2067), Expect = 2.5e-228
Identity = 389/397 (97.98%), Postives = 390/397 (98.24%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSG--GSGSGSGSGVKCDGCSTGDGY 60
           MMIDEQPNRPNQKLHVPPW FMEDPASDGYSHSPGSG  GSGSGSGSGVKCDGCS+GDGY
Sbjct: 1   MMIDEQPNRPNQKLHVPPWAFMEDPASDGYSHSPGSGGSGSGSGSGSGVKCDGCSSGDGY 60

Query: 61  SPFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGR 120
           SPFYLQEALAMLQQYLPSKEAEVESDLD SGRE DSPVDTYSSDQFRMYEFKIKKCLRGR
Sbjct: 61  SPFYLQEALAMLQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLRGR 120

Query: 121 SHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPAR 180
           SHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNC KGDACEFAHGVFECWLHPAR
Sbjct: 121 SHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPAR 180

Query: 181 YRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMP 240
           YRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMP
Sbjct: 181 YRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMP 240

Query: 241 YLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSS 300
           YLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSS
Sbjct: 241 YLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSS 300

Query: 301 LWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDL 360
           LWNVQVGSPVFGSPGESSARSGF SLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDL
Sbjct: 301 LWNVQVGSPVFGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDL 360

Query: 361 RAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 396
           RAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK
Sbjct: 361 RAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 397

[Close]

BLAST of CmoCh12G013190 vs. ExPASy TrEMBL
Match: A0A6J1HQ03 (zinc finger CCCH domain-containing protein 20-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465573 PE=4 SV=1)

HSP 1 Score: 785.0 bits (2026), Expect = 1.4e-223
Identity = 380/395 (96.20%), Postives = 381/395 (96.46%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSP 60
           MMIDEQPNRPNQKLHVPPW FMEDPASDGYSHSP         GSGVKCDGCS+GDGYSP
Sbjct: 1   MMIDEQPNRPNQKLHVPPWAFMEDPASDGYSHSP---------GSGVKCDGCSSGDGYSP 60

Query: 61  FYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSH 120
           FYLQEALAMLQQYLPSKEAEVESDLD SGRE DSPVDTYSSDQFRMYEFKIKKCLRGRSH
Sbjct: 61  FYLQEALAMLQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLRGRSH 120

Query: 121 DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYR 180
           DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNC KGDACEFAHGVFECWLHPARYR
Sbjct: 121 DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYR 180

Query: 181 TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYL 240
           TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYL
Sbjct: 181 TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYL 240

Query: 241 SSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLW 300
           SSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLW
Sbjct: 241 SSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLW 300

Query: 301 NVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRA 360
           NVQVGSPVFGSPGESSARSGF SLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRA
Sbjct: 301 NVQVGSPVFGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRA 360

Query: 361 KMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 396
           KMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK
Sbjct: 361 KMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 386

[Close]

BLAST of CmoCh12G013190 vs. ExPASy TrEMBL
Match: A0A5A7V3Q9 (Zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00680 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.3e-187
Identity = 325/400 (81.25%), Postives = 355/400 (88.75%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSH-SPGSGGSGSGSGSGVKCDGCSTGDGYS 60
           M++ EQP R N  + +PPWTF+ED   D YSH SPGSGGS   SGS VKCDGCS+G GYS
Sbjct: 1   MIVGEQPKRTNPTVQIPPWTFLEDAGMDVYSHSSPGSGGS---SGS-VKCDGCSSGGGYS 60

Query: 61  PFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRS 120
           P+YLQEALAML++YLPS EAE++SD+D SG+E DSPVD YSSDQFRMYEFKIKKC RGRS
Sbjct: 61  PYYLQEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTRGRS 120

Query: 121 HDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARY 180
           HDWTECPFAHPGEKARRRDPR+YYYSGTACADFRKG+C KGDACEFAHGVFECWLHPARY
Sbjct: 121 HDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARY 180

Query: 181 RTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPY 240
           RTQPCKDGTSCRRRVCFFAHTPEQLR+LPQQSPRST+SIPSYDGSPLRQAIEACAKQMPY
Sbjct: 181 RTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQMPY 240

Query: 241 LSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP--S 300
           LSS GTS PVSPRIESPPQSP+ +SLNRPHA SSINEM+ASLR+LQL+KEL KVQSP  S
Sbjct: 241 LSSPGTSPPVSPRIESPPQSPIIKSLNRPHAPSSINEMIASLRNLQLNKELCKVQSPSSS 300

Query: 301 SLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRD 360
           S WNVQVGSPVFGSP +S+ RSG  SLP+T TPP +RYLDFW+LG GEE AM RVESGRD
Sbjct: 301 SSWNVQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVESGRD 360

Query: 361 LRAKMLEKLRKENSVACGDQEKPGGGS--VDVGWISELLK 396
           LRAKM EKLRKENSV CGDQ+K  GG+  +DVGWISELLK
Sbjct: 361 LRAKMFEKLRKENSVGCGDQDKNSGGAGGLDVGWISELLK 396

[Close]

BLAST of CmoCh12G013190 vs. ExPASy TrEMBL
Match: A0A1S3C9K7 (zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103498342 PE=4 SV=1)

HSP 1 Score: 665.6 bits (1716), Expect = 1.3e-187
Identity = 325/400 (81.25%), Postives = 355/400 (88.75%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSH-SPGSGGSGSGSGSGVKCDGCSTGDGYS 60
           M++ EQP R N  + +PPWTF+ED   D YSH SPGSGGS   SGS VKCDGCS+G GYS
Sbjct: 1   MIVGEQPKRTNPTVQIPPWTFLEDTGMDVYSHSSPGSGGS---SGS-VKCDGCSSGGGYS 60

Query: 61  PFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRS 120
           P+YLQEALAML++YLPS EAE++SD+D SG+E DSPVD YSSDQFRMYEFKIKKC RGRS
Sbjct: 61  PYYLQEALAMLKRYLPSNEAEMDSDIDVSGKEMDSPVDAYSSDQFRMYEFKIKKCTRGRS 120

Query: 121 HDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARY 180
           HDWTECPFAHPGEKARRRDPR+YYYSGTACADFRKG+C KGDACEFAHGVFECWLHPARY
Sbjct: 121 HDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCVKGDACEFAHGVFECWLHPARY 180

Query: 181 RTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPY 240
           RTQPCKDGTSCRRRVCFFAHTPEQLR+LPQQSPRST+SIPSYDGSPLRQAIEACAKQMPY
Sbjct: 181 RTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTTSIPSYDGSPLRQAIEACAKQMPY 240

Query: 241 LSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSP--S 300
           LSS GTS PVSPRIESPPQSP+ +SLNRPHA SSINEM+ASLR+LQL+KEL KVQSP  S
Sbjct: 241 LSSPGTSPPVSPRIESPPQSPIIKSLNRPHAPSSINEMIASLRNLQLNKELCKVQSPSSS 300

Query: 301 SLWNVQVGSPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRD 360
           S WNVQVGSPVFGSP +S+ RSG  SLP+T TPP +RYLDFW+LG GEE AM RVESGRD
Sbjct: 301 SSWNVQVGSPVFGSPKDSTTRSGLPSLPETSTPPGIRYLDFWELGIGEEPAMERVESGRD 360

Query: 361 LRAKMLEKLRKENSVACGDQEKPGGGS--VDVGWISELLK 396
           LRAKM EKLRKENSV CGDQ+K  GG+  +DVGWISELLK
Sbjct: 361 LRAKMFEKLRKENSVGCGDQDKNSGGAGGLDVGWISELLK 396

[Close]

BLAST of CmoCh12G013190 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-98
Identity = 200/400 (50.00%), Postives = 253/400 (63.25%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGDGYSP 60
           MMI E     N  +H+PPW   ED        SP  G S                     
Sbjct: 1   MMIGESHRGFNPTVHIPPWPLSEDLTVSDIYGSPDGGSS--------------------- 60

Query: 61  FYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSH 120
             + EALA LQ+YLPS E + +SD D SG   DSP+D Y+ D FRMYEFK+++C RGRSH
Sbjct: 61  --MMEALAELQRYLPSNEPDPDSDPDLSG--PDSPIDAYTCDHFRMYEFKVRRCARGRSH 120

Query: 121 DWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYR 180
           DWTECP+AHPGEKARRRDPRK++YSGTAC +FRKG C +GDACEF+HGVFECWLHPARYR
Sbjct: 121 DWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYR 180

Query: 181 TQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYD--GSPLRQAIEACAKQMP 240
           TQPCKDG +CRRRVCFFAH+P+Q+R+LP QSP     + S+D     +R+A +       
Sbjct: 181 TQPCKDGGNCRRRVCFFAHSPDQIRVLPNQSP---DRVDSFDVLSPTIRRAFQFS----- 240

Query: 241 YLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSS 300
            +S S  S PVSPR +S     +   L+R   ++  N++VASLR+LQL+K      S SS
Sbjct: 241 -ISPSSNSPPVSPRGDSDSSCSL---LSRSLGSNLGNDVVASLRNLQLNK---VKSSLSS 300

Query: 301 LWNVQVG--SPVFGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGR 360
            +N Q+G     FGSP  S    GF SLP TPT P   +++ W+ G  EE AM RVESGR
Sbjct: 301 SYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPG--FMNIWENGLEEEPAMERVESGR 358

Query: 361 DLRAKMLEKLRKENSVAC--GDQEKPGGGSVDVGWISELL 395
           +LRA++ EKL KEN +     D ++  G + DVGW+S+L+
Sbjct: 361 ELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVGWVSDLV 358

[Close]

BLAST of CmoCh12G013190 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 335.5 bits (859), Expect = 5.8e-92
Identity = 187/336 (55.65%), Postives = 228/336 (67.86%), Query Frame = 0


Query: 65  EALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTE 124
           EALA LQ+YLPS E + ES  D  G   DSP+D YS D FRMY+FK+++C RGRSHDWTE
Sbjct: 43  EALAGLQRYLPSNEPDPESYPDLLG--PDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTE 102

Query: 125 CPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARYRTQPC 184
           CP+AHPGEKARRRDPRKY+YSGTAC DFRKG C KGD+CEFAHGVFECWLHPARYRTQPC
Sbjct: 103 CPYAHPGEKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPC 162

Query: 185 KDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYD-GSPLRQAIEACAKQMPYLSSS 244
           KDG +C R++CFFAH+P+QLR L  +SP     + S+D  SP+R    A A Q+     S
Sbjct: 163 KDGGNCLRKICFFAHSPDQLRFLHTRSP---DRVDSFDVSSPIR----ARAFQLSISPVS 222

Query: 245 GTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQ 304
           G S P+SPR +S   SPM +SL+R   + SIN++V S R+LQ           +S+ +  
Sbjct: 223 G-SPPMSPRADS-ESSPMTQSLSRSLGSCSINDVVPSFRNLQF----------NSVKSFP 282

Query: 305 VGSPV--FGSPGESSARSGFSSLPDTPTPPAVRYLDFWDLGCGEEQAMAR-VESGRDLRA 364
             +P+  FGSP  S    GF SLP TPT P    LD W+ G  EE  M R VESGR+LR 
Sbjct: 283 RNNPLFGFGSPRGSILGPGFQSLPTTPTRPG--NLDIWEYGLEEEPVMERVVESGRELRE 342

Query: 365 KMLEKLRKENSV--ACGDQEKPGGGSVDVGWISELL 395
           KM EKL KEN +     D ++  G + DVGW+S+LL
Sbjct: 343 KMREKLHKENCMDRVAQDPDQNLGEAPDVGWVSDLL 355

[Close]

BLAST of CmoCh12G013190 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 277.7 bits (709), Expect = 1.4e-74
Identity = 168/376 (44.68%), Postives = 214/376 (56.91%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGD-GYS 60
           MMI E  NRP+  +H+P W  + DP +           + S   S V  +  S  D  +S
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTA-----------TISSPFSSVNLN--SVNDYPHS 60

Query: 61  PFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRS 120
           P    ++ A L +YLPS E   +SD  +SG E+    D++SSD+FR+YEFKI++C RGRS
Sbjct: 61  PSPYLDSFASLFRYLPSNELTNDSD-SSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRS 120

Query: 121 HDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARY 180
           HDWTECPFAHPGEKARRRDPRK++YSGTAC +FRKG+C +GD+CEF+HGVFECWLHP+RY
Sbjct: 121 HDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRY 180

Query: 181 RTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPY 240
           RTQPCKDGTSCRRR+CFFAHT EQLR+LP               SP              
Sbjct: 181 RTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSP-------------- 240

Query: 241 LSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSL 300
            +S   S   SP  ESPP SP            S  E++AS+R +QL+            
Sbjct: 241 -TSILVSPSFSPPSESPPLSP------------STGELIASMRKMQLNG----------- 300

Query: 301 WNVQVGSPVFGSPGESSARSGFSSL---PDTPTPPAVRYLDFWDLGCGEEQAMARVESGR 360
                G   + SP  S+ R  FSS        T P +R  +       E  AM  VESG+
Sbjct: 301 -----GGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEI-----EEAPAMEFVESGK 314

Query: 361 DLRAKMLEKLRKENSV 373
           +LRA+M  +L +ENS+
Sbjct: 361 ELRAEMYARLSRENSL 314

[Close]

BLAST of CmoCh12G013190 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 277.7 bits (709), Expect = 1.4e-74
Identity = 168/376 (44.68%), Postives = 214/376 (56.91%), Query Frame = 0


Query: 1   MMIDEQPNRPNQKLHVPPWTFMEDPASDGYSHSPGSGGSGSGSGSGVKCDGCSTGD-GYS 60
           MMI E  NRP+  +H+P W  + DP +           + S   S V  +  S  D  +S
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTA-----------TISSPFSSVNLN--SVNDYPHS 60

Query: 61  PFYLQEALAMLQQYLPSKEAEVESDLDASGREADSPVDTYSSDQFRMYEFKIKKCLRGRS 120
           P    ++ A L +YLPS E   +SD  +SG E+    D++SSD+FR+YEFKI++C RGRS
Sbjct: 61  PSPYLDSFASLFRYLPSNELTNDSD-SSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRS 120

Query: 121 HDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCTKGDACEFAHGVFECWLHPARY 180
           HDWTECPFAHPGEKARRRDPRK++YSGTAC +FRKG+C +GD+CEF+HGVFECWLHP+RY
Sbjct: 121 HDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRY 180

Query: 181 RTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPY 240
           RTQPCKDGTSCRRR+CFFAHT EQLR+LP               SP              
Sbjct: 181 RTQPCKDGTSCRRRICFFAHTTEQLRVLPCSLDPDLGFFSGLATSP-------------- 240

Query: 241 LSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSL 300
            +S   S   SP  ESPP SP            S  E++AS+R +QL+            
Sbjct: 241 -TSILVSPSFSPPSESPPLSP------------STGELIASMRKMQLNG----------- 300

Query: 301 WNVQVGSPVFGSPGESSARSGFSSL---PDTPTPPAVRYLDFWDLGCGEEQAMARVESGR 360
                G   + SP  S+ R  FSS        T P +R  +       E  AM  VESG+
Sbjct: 301 -----GGCSWSSPMRSAVRLPFSSSLRPIQAATWPRIREFEI-----EEAPAMEFVESGK 314

Query: 361 DLRAKMLEKLRKENSV 373
           +LRA+M  +L +ENS+
Sbjct: 361 ELRAEMYARLSRENSL 314

[Close]

BLAST of CmoCh12G013190 vs. TAIR 10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 207.6 bits (527), Expect = 1.8e-53
Identity = 110/213 (51.64%), Postives = 137/213 (64.32%), Query Frame = 0


Query: 79  AEVESDLDASGRE-------ADSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPG 138
           +E E D + + RE       +DS  D Y+SD FRM+EFKI++C R RSHDWT+CPFAHPG
Sbjct: 52  SEHEEDNEDNNRENKEYCYDSDSD-DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPG 111

Query: 139 EKARRRDPRKYYYSGTACADFRK-GNCTKGDACEFAHGVFECWLHPARYRTQPCKDGTSC 198
           EKARRRDPR++ YSG  C +FR+ G+C++GD CEFAHGVFECWLHP RYRT+ CKDG  C
Sbjct: 112 EKARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHC 171

Query: 199 RRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTST--- 258
           +R+VCFFAH+P QLR+LP   P + S +     SP   A   C     + SSS TST   
Sbjct: 172 KRKVCFFAHSPRQLRVLP---PENVSGV---SASPSPAAKNPCCL---FCSSSPTSTLLG 231

Query: 259 PVSPRIESPPQSPMFRSLNRPHATSSINEMVAS 281
            +S    SP  SP     N+  A S +    AS
Sbjct: 232 NLSHLSRSPSLSPPMSPANKAAAFSRLRNRAAS 254

The following BLAST results are available for this feature:

BLAST of CmoCh12G013190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	1.5e-97	50.00	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	2.1e-91	49.26	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q9M0G2	8.2e-91	55.65	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q6L4N4	3.7e-83	46.52	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]
O82307	2.0e-73	44.68	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmoCh12G013190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FG51	5.8e-233	100.00	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HL92	2.5e-228	97.98	zinc finger CCCH domain-containing protein 20-like isoform X1 OS=Cucurbita maxim...	[more]
A0A6J1HQ03	1.4e-223	96.20	zinc finger CCCH domain-containing protein 20-like isoform X2 OS=Cucurbita maxim...	[more]
A0A5A7V3Q9	1.3e-187	81.25	Zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo var. makuwa O...	[more]
A0A1S3C9K7	1.3e-187	81.25	zinc finger CCCH domain-containing protein 20-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CmoCh12G013190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	1.1e-98	50.00	CCCH-type zinc finger family protein	[more]
AT4G29190.1	5.8e-92	55.65	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	1.4e-74	44.68	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	1.4e-74	44.68	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G03790.1	1.8e-53	51.64	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 143..169 e-value: 0.001 score: 28.4 coord: 178..201 e-value: 14.0 score: 7.1
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 148..168 e-value: 4.9E-5 score: 23.1
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 143..170 score: 12.905883
None	No IPR available	GENE3D	3.30.1370.210		coord: 143..206 e-value: 1.1E-8 score: 37.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..260
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 10..394
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 10..394

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013190.1	CmoCh12G013190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding