CmoCh12G013110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein kinase domain-containing protein
Location	Cmo_Chr12: 11481007 .. 11482221 (+)
RNA-Seq Expression	CmoCh12G013110
Synteny	CmoCh12G013110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCATAAATACTATACACAATCTCCCAAAATTCTATCATTATTAAAATATTTGCATTTCTGTCTATGGTGATCCTACTCACCCTTCTTATTAAATATTCCAAACCCACATAAAAGAATCATTTTTTGGTCAATGCCCTTCCATTGCTTCCATTTTTAAGCTCCTTCCCCATTCCTTCTCTTCCAATCCTCTTCTTCTTTGGACATGGACATGGGTGGCAAAGACATGATTGAAGCTTTTGAAGCTTATAAAGCTATGGAGTTGCAAGAACTTAGTTTAGTGATGGTGGAAACCCGAGAAGATGATGTTTGTGAAGCTTCTATTTCGACTGAGAACTCGATCAGTTCATTCGAATCCTTTTCATCAGAATTGTTGGAAGATGCATCGTCTACTTCAACTTCAAATCTCTCATTATCGTCATTGTCTTCATCGCAGTCAAGTGGACCTCTCTATGAACTTTCCGAGCTCATGGACAATCTCCCCATCAAGTAAGAAGATACAACAAAACCCCTTTTTTTTTTCTTTTTTTTTTTAAGAAAAAGAAAAGGAATGATAAACTAATAACCCTTTTAATTAACTTGGCTTTTCCAGGAGAGGACTATCAAAATTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTGGAAGATCTTGCAAAGAAAGTGAATAATAATAATAATATTACTTCTCAAAAGAAAAAGATGAAGTGTTGTAAGAGCTATGGAGGAGGCTTAGATGCTCAAAGATCTTATTCTCCAAAGCCTTTGATTGCTAAAAAGGCTTCAAAGAGACGTAGTAGATTATTTGTCAGCCATTGATGTTCGATGCTTGTTCCTCTTCCTTTTTCTCACAGACTTTTGTGTACGTTTTTGAGGCAAAAATTATGTTTGTTCTAACGTTAATGATCGAGGGTTCGGAATCCTTTGAGAAAAGAAGAAGAAGAATGATCGATAGACGTTTATGGAGTGAAAGAGAGTTCAAACTTTTGTCGGATCCTTTTGGGTCAATCAATCTACTTTAACCCACGATCGATAGACATTTAGCTTGAGTTAACAAATCGTTATCGTTATAGTTTGATTCATTGACAAAATTTTTATATAAGATACTATTTGTAGCAGTACTGATATGAACTCAAAAGTATGTTATTACCTATAAAAACAATCGAAATATCCCAATAAATTGGAATTTGAACTTCATA

mRNA sequence

TACCATAAATACTATACACAATCTCCCAAAATTCTATCATTATTAAAATATTTGCATTTCTGTCTATGGTGATCCTACTCACCCTTCTTATTAAATATTCCAAACCCACATAAAAGAATCATTTTTTGGTCAATGCCCTTCCATTGCTTCCATTTTTAAGCTCCTTCCCCATTCCTTCTCTTCCAATCCTCTTCTTCTTTGGACATGGACATGGGTGGCAAAGACATGATTGAAGCTTTTGAAGCTTATAAAGCTATGGAGTTGCAAGAACTTAGTTTAGTGATGGTGGAAACCCGAGAAGATGATGTTTGTGAAGCTTCTATTTCGACTGAGAACTCGATCAGTTCATTCGAATCCTTTTCATCAGAATTGTTGGAAGATGCATCGTCTACTTCAACTTCAAATCTCTCATTATCGTCATTGTCTTCATCGCAGTCAAGTGGACCTCTCTATGAACTTTCCGAGCTCATGGACAATCTCCCCATCAAGAGAGGACTATCAAAATTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTGGAAGATCTTGCAAAGAAAGTGAATAATAATAATAATATTACTTCTCAAAAGAAAAAGATGAAGTGTTGTAAGAGCTATGGAGGAGGCTTAGATGCTCAAAGATCTTATTCTCCAAAGCCTTTGATTGCTAAAAAGGCTTCAAAGAGACGTAGTAGATTATTTGTCAGCCATTGATGTTCGATGCTTGTTCCTCTTCCTTTTTCTCACAGACTTTTGTGTACGTTTTTGAGGCAAAAATTATGTTTGTTCTAACGTTAATGATCGAGGGTTCGGAATCCTTTGAGAAAAGAAGAAGAAGAATGATCGATAGACGTTTATGGAGTGAAAGAGAGTTCAAACTTTTGTCGGATCCTTTTGGGTCAATCAATCTACTTTAACCCACGATCGATAGACATTTAGCTTGAGTTAACAAATCGTTATCGTTATAGTTTGATTCATTGACAAAATTTTTATATAAGATACTATTTGTAGCAGTACTGATATGAACTCAAAAGTATGTTATTACCTATAAAAACAATCGAAATATCCCAATAAATTGGAATTTGAACTTCATA

Coding sequence (CDS)

ATGGACATGGGTGGCAAAGACATGATTGAAGCTTTTGAAGCTTATAAAGCTATGGAGTTGCAAGAACTTAGTTTAGTGATGGTGGAAACCCGAGAAGATGATGTTTGTGAAGCTTCTATTTCGACTGAGAACTCGATCAGTTCATTCGAATCCTTTTCATCAGAATTGTTGGAAGATGCATCGTCTACTTCAACTTCAAATCTCTCATTATCGTCATTGTCTTCATCGCAGTCAAGTGGACCTCTCTATGAACTTTCCGAGCTCATGGACAATCTCCCCATCAAGAGAGGACTATCAAAATTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTGGAAGATCTTGCAAAGAAAGTGAATAATAATAATAATATTACTTCTCAAAAGAAAAAGATGAAGTGTTGTAAGAGCTATGGAGGAGGCTTAGATGCTCAAAGATCTTATTCTCCAAAGCCTTTGATTGCTAAAAAGGCTTCAAAGAGACGTAGTAGATTATTTGTCAGCCATTGA

Protein sequence

MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDASSTSTSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKKVNNNNNITSQKKKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH

Homology

[Close]

BLAST of CmoCh12G013110 vs. ExPASy TrEMBL
Match: A0A6J1FBB9 (uncharacterized protein LOC111443888 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443888 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.2e-83
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0


Query: 1   MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA 60
           MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA
Sbjct: 1   MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA 60

Query: 61  SSTSTSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLED 120
           SSTSTSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLED
Sbjct: 61  SSTSTSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLED 120

Query: 121 LAKKVNNNNNITSQKKKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH 176
           LAKKVNNNNNITSQKKKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH
Sbjct: 121 LAKKVNNNNNITSQKKKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH 175

[Close]

BLAST of CmoCh12G013110 vs. ExPASy TrEMBL
Match: A0A6J1HQ75 (uncharacterized protein LOC111465679 OS=Cucurbita maxima OX=3661 GN=LOC111465679 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 164/175 (93.71%), Postives = 170/175 (97.14%), Query Frame = 0


Query: 1   MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA 60
           MDMGGK MIEAF+ Y+A+ELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA
Sbjct: 22  MDMGGKQMIEAFQPYEALELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA 81

Query: 61  SSTSTSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLED 120
           SSTSTS+LSLSSLSSSQSSGPLYELSELM NLPIKRGLSKFYNGKSQSFTS+ASAKSLED
Sbjct: 82  SSTSTSSLSLSSLSSSQSSGPLYELSELMANLPIKRGLSKFYNGKSQSFTSVASAKSLED 141

Query: 121 LAKKVNNNNNITSQKKKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH 176
           LAKKV NNNNITSQ+KKMK CKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH
Sbjct: 142 LAKKV-NNNNITSQRKKMKSCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH 195

[Close]

BLAST of CmoCh12G013110 vs. ExPASy TrEMBL
Match: A0A6J1FAH9 (uncharacterized protein LOC111443888 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443888 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.2e-75
Identity = 165/175 (94.29%), Postives = 165/175 (94.29%), Query Frame = 0


Query: 1   MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA 60
           MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA
Sbjct: 1   MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASISTENSISSFESFSSELLEDA 60

Query: 61  SSTSTSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLED 120
           SSTSTSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLED
Sbjct: 61  SSTSTSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLED 120

Query: 121 LAKKVNNNNNITSQKKKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH 176
           LAKKV          KKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH
Sbjct: 121 LAKKV----------KKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSRLFVSH 165

[Close]

BLAST of CmoCh12G013110 vs. ExPASy TrEMBL
Match: A0A6J1DKH4 (uncharacterized protein LOC111021921 OS=Momordica charantia OX=3673 GN=LOC111021921 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.4e-55
Identity = 140/185 (75.68%), Postives = 153/185 (82.70%), Query Frame = 0


Query: 1   MDMGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEASIST-----ENSISSFESFSSE 60
           MD+GGK+ +EAFE   AMEL+ELS V++++ ED+VCEASIST     ENSISS ESFSSE
Sbjct: 1   MDIGGKEKLEAFE---AMELRELSWVIMKSGEDEVCEASISTMDSSSENSISSIESFSSE 60

Query: 61  LLEDASSTSTSNLSLSSLSS-SQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLAS 120
           L EDASS+STSN SLSS S  S SSGPLYELSELM NLPIKRGLSKFYNGKSQSFTSLAS
Sbjct: 61  LAEDASSSSTSNPSLSSFSPLSSSSGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLAS 120

Query: 121 AKSLEDLAKKVNNNNNITSQKKKMKCCKSYGGGLDAQRSYSPKPLIAKKAS----KRRSR 176
           AKSLEDLAK+V NNN I  Q+KKMKCCKSYGGGLDAQRSYSPK  IAKK S    KR +R
Sbjct: 121 AKSLEDLAKRV-NNNIIIPQRKKMKCCKSYGGGLDAQRSYSPKASIAKKPSKAVCKRNNR 180

[Close]

BLAST of CmoCh12G013110 vs. ExPASy TrEMBL
Match: A0A1S3C929 (uncharacterized protein LOC103498213 OS=Cucumis melo OX=3656 GN=LOC103498213 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.9e-42
Identity = 121/182 (66.48%), Postives = 141/182 (77.47%), Query Frame = 0


Query: 3   MGGKDMIEAFEAYKAMELQELSLVMVETREDDVCEA-SIST--ENSISSFESFSSELLED 62
           M GK+ I   E ++AMEL+EL+ V++E+RED+V EA S ST   +S++S ES +SELLED
Sbjct: 1   MEGKEQI--IEDFEAMELRELNWVIMESREDEVLEAFSTSTIDSSSMNSMESSASELLED 60

Query: 63  ASSTS-----TSNLSLSSLSSSQSSGPLYELSELMDNLPIKRGLSKFYNGKSQSFTSLAS 122
           ASS+S     +S+LSLS   SS   GPLYELSELM NLPIKRGLSKFYNGKSQSFTSLAS
Sbjct: 61  ASSSSLTSNFSSSLSLSPSLSSSDDGPLYELSELMANLPIKRGLSKFYNGKSQSFTSLAS 120

Query: 123 AKSLEDLAKKV--NNNNNITSQKKKMKCCKSYGGGLDAQRS---YSPKPLIAKKASKRRS 172
            KSLEDLAK+V  NNNN   SQ+KKMKCCKSYGG LDAQ+S   +SPKPLIAKK SK  S
Sbjct: 121 VKSLEDLAKRVNYNNNNYYNSQRKKMKCCKSYGGSLDAQKSSNYHSPKPLIAKKVSKPSS 180

[Close]

BLAST of CmoCh12G013110 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 67/146 (45.89%), Postives = 87/146 (59.59%), Query Frame = 0


Query: 28  VETREDDVCEAS--ISTENSISSFESFSSELLEDASSTSTSNLSLSSLSSSQSSGPLYEL 87
           ++  ED V E S   S E   SS  S SS +  D +     +     +SSS S+GPL +L
Sbjct: 23  IQEEEDIVQEVSTTFSDEEDNSSSCSLSSSMCSDFTEDDDDD----DVSSSSSNGPLEDL 82

Query: 88  SELMDNLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKKVNNNNNITSQKKKMKCCKSYG 147
           S+LM +LPIKRGLSKFY GKSQSFTSL + KSLEDL K+   + N  +   K K  +S G
Sbjct: 83  SDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGA---KRKSSRSTG 142

Query: 148 GGLDA--QRSYSPKPLIAKKASKRRS 170
           G LD   +R +SPK  I+KK ++  S
Sbjct: 143 GILDQSYKRVFSPKATISKKPNRTPS 161

[Close]

BLAST of CmoCh12G013110 vs. TAIR 10
Match: AT4G26288.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: oxidative stress 3 (TAIR:AT5G56550.1); Has 289 Blast hits to 232 proteins in 41 species: Archae - 0; Bacteria - 12; Metazoa - 36; Fungi - 21; Plants - 151; Viruses - 2; Other Eukaryotes - 67 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-12
Identity = 62/159 (38.99%), Postives = 87/159 (54.72%), Query Frame = 0


Query: 18  MELQELSLVMVETREDDVCEASISTE--NSISSFESFSSELLEDASSTSTSNLSLSSLSS 77
           M +++ +L+     E+ V   S S+   +S SS    SS+L EDASS+S+S       SS
Sbjct: 1   MNIRDGNLISTTKEEEGVIGVSGSSAKVSSSSSISMCSSDLTEDASSSSSS-------SS 60

Query: 78  SQSSGPLYELSELMDNLPI----KRGLSKFYNGKSQSFTSLASAKSLEDLAKKVNNNNNI 137
           S S+GP  +LS+L+  LPI    K GLSK+Y GKSQSFTSLA+  SL+DL K+ +   + 
Sbjct: 61  SSSNGPFDDLSDLISQLPIIQVKKGGLSKYYKGKSQSFTSLANVTSLQDLVKRGSRTKS- 120

Query: 138 TSQKKKMKCCKSYGGGLDAQRSYSPKPLIAKKASKRRSR 171
                   CCK           Y PK  I+ KA++  S+
Sbjct: 121 --------CCK-------RDYFYGPKATISMKATRTSSK 136

[Close]

BLAST of CmoCh12G013110 vs. TAIR 10
Match: AT3G03170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits to 184 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-05
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 95  KRGLSKFYNGKSQSFTSLASAKSLEDLAKKVNNNNNITSQKKKMKCCKSYGG 147
           +RGLSK Y GKSQSFT+LA A ++EDLAK  N  N    Q+++   C+   G
Sbjct: 56  RRGLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLKQRRESPHCRRLSG 107

The following BLAST results are available for this feature:

BLAST of CmoCh12G013110 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh12G013110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBB9	2.2e-83	100.00	uncharacterized protein LOC111443888 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HQ75	1.3e-75	93.71	uncharacterized protein LOC111465679 OS=Cucurbita maxima OX=3661 GN=LOC111465679...	[more]
A0A6J1FAH9	2.2e-75	94.29	uncharacterized protein LOC111443888 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DKH4	7.4e-55	75.68	uncharacterized protein LOC111021921 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A1S3C929	1.9e-42	66.48	uncharacterized protein LOC103498213 OS=Cucumis melo OX=3656 GN=LOC103498213 PE=...	[more]

BLAST of CmoCh12G013110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56550.1	1.3e-16	45.89	oxidative stress 3	[more]
AT4G26288.1	2.6e-12	38.99	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT3G03170.1	1.8e-05	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172	OS08G0516900 PROTEIN	coord: 27..171
None	No IPR available	PANTHER	PTHR33172:SF45	EMB\|CAB83157.1	coord: 27..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013110.1	CmoCh12G013110.1	mRNA