CmoCh12G013000 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G013000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SNW/SKI-interacting protein-like
Location	Cmo_Chr12: 11433499 .. 11434813 (+)
RNA-Seq Expression	CmoCh12G013000
Synteny	CmoCh12G013000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCTAAGGTTCAGAAAGAAATGTTTATGAAGCAGAAGGAGAAGGAGTCAGAGCTTCGAGCGCTAGCTCAAAAGGCTCGGTCTGAGAGCACTGGAGCTGCCCCTGCTTCTGCAGCTCCTTATCCATCAGAGAGAAAGAGAGGTCGAAGAAGCCGATCCGTTTGGACTTGATCAGTTCTTGACCAGTGAAGAAAGGTAAGAAAGCTATGGATAAAGTTGGCAGTGGTGGAATGAGAGCGAGTGGTGGCTCATCGACATGTGATGGCTACGATGGTGGCTCCGGTAGAACTCTTATTGGATTCGAAAGAAGGCAGTAGAGGTACAATGCAAGGTACCAACTGAAACTGCTTCTGAATTGCAAGTTATATTTGTTTGCTTCTTTTATTGATTGCTATTTAATTATATGTCTTTCTTTTTTCTATTGCATTGGAAGATCCCTCGCTCATTTGGATTAAGTTTTTCGCTGCGACAGGTGGAAAAGTTGGGATCCTGATCGGGAGGACACTTTTGGGCGAAAATGAGCCAAATTTTCCACATATACCTTAAGGAGGTGACATTTTTGTTTAATGTTCTCTTTACTTGATCTGCCGATACTCTCATTTGATGAATCACTGATTCATGCATTTTCTTGAATTTCTATAATTATTATTTGTTTTTTTTTTTAAATTTGGAAATTTTCATTTTATGTACATGTTTTCTCTGGAATTTGCATGCATTTGTGCTTTCAAATAGAATGAATCTGACCTGAATTTACTTGGGAAAATTTCATGGAAATTTGTAGTATGCCCTTTTTCTTGATATGCTAGTCAATCGATTAAACTGATAATATTGGAATTGCAAATTGGGCTTTTTTTTTTATAAAAAAAAAGGAAAATTATTGAGAAACATTTGAGATTTGAATGTCATCATTTGTTTCCACATTGTTGCCTTCTTCAGCATTTGTTTCCACATTTGTTTCCACATATCCTTCACGGATCCTTTTAATTAACAACGCCCTTCTTTAGGACAGTTTCGTATCTTCCGGAATCATTGGCTTTTGAGGGCGAGGATGTCGGCAGGTATTCTCATTCACCCACTCCAATACAAATGTTAAACAAATTTACGTTTAACTACCGTCTTCCTTTTGGTGATCCACTCTAAAATTTGTGCTATAGTATGCATGTATGTATTAATTTTCCATTTACAACTTTTCTTTCCAATTTTTTTAACAGTTAATTTTATAAAAATACCCTTACATTTAACTTCAAACTTTGAAACTTGCAAAAGAATTTATAAATATCCAAAGTTTAAATTTTTATAATATTTTTAAAAA

mRNA sequence

ATGAGATCTAAGGTTCAGAAAGAAATGTTTATGAAGCAGAAGGAGAAGGAGTCAGAGCTTCGAGCGCTAGCTCAAAAGGCTCGGTCTGAGAGCACTGGAGCTGCCCCTGCTTCTGCAGCTCCTTATCCATCAGAGAGAAAGAGAGAGCGAGTGGTGGCTCATCGACATGTGATGGCTACGATGGTGGCTCCGGTAGAACTCTTATTGGATTCGAAAGAAGGCAGTAGAGGTACAATGCAAGGTGGAAAAGTTGGGATCCTGATCGGGAGGACACTTTTGGGCGAAAATGAGCCAAATTTTCCACATATACCTTAAGGAGTTTCGTATCTTCCGGAATCATTGGCTTTTGAGGGCGAGGATGTCGGCAGGTATTCTCATTCACCCACTCCAATACAAATGTTAAACAAATTTACGTTTAACTACCGTCTTCCTTTTGGTGATCCACTCTAAAATTTGTGCTATAGTATGCATGTATGTATTAATTTTCCATTTACAACTTTTCTTTCCAATTTTTTTAACAGTTAATTTTATAAAAATACCCTTACATTTAACTTCAAACTTTGAAACTTGCAAAAGAATTTATAAATATCCAAAGTTTAAATTTTTATAATATTTTTAAAAA

Coding sequence (CDS)

ATGAGATCTAAGGTTCAGAAAGAAATGTTTATGAAGCAGAAGGAGAAGGAGTCAGAGCTTCGAGCGCTAGCTCAAAAGGCTCGGTCTGAGAGCACTGGAGCTGCCCCTGCTTCTGCAGCTCCTTATCCATCAGAGAGAAAGAGAGAGCGAGTGGTGGCTCATCGACATGTGATGGCTACGATGGTGGCTCCGGTAGAACTCTTATTGGATTCGAAAGAAGGCAGTAGAGGTACAATGCAAGGTGGAAAAGTTGGGATCCTGATCGGGAGGACACTTTTGGGCGAAAATGAGCCAAATTTTCCACATATACCTTAA

Protein sequence

MRSKVQKEMFMKQKEKESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHRHVMATMVAPVELLLDSKEGSRGTMQGGKVGILIGRTLLGENEPNFPHIP

Homology

[Close]

BLAST of CmoCh12G013000 vs. ExPASy Swiss-Prot
Match: O80653 (SNW/SKI-interacting protein OS=Arabidopsis thaliana OX=3702 GN=SKIP PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.2e-05
Identity = 37/56 (66.07%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR 56
           MRSKVQKEM MK KE KE ELRALAQKARSE TGA  A + P  S+R R   V  R
Sbjct: 315 MRSKVQKEMVMKDKERKEQELRALAQKARSERTGA--AMSMPVSSDRGRSESVDPR 368

[Close]

BLAST of CmoCh12G013000 vs. ExPASy TrEMBL
Match: A0A6J1DKF4 (SNW/SKI-interacting protein-like OS=Momordica charantia OX=3673 GN=LOC111021906 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.3e-08
Identity = 42/50 (84.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRE 50
           MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP SA PYPSER  E
Sbjct: 314 MRSKVQKEMLMKQKEKKELELRALAQKARSERTGAAPPSAIPYPSERSAE 363

[Close]

BLAST of CmoCh12G013000 vs. ExPASy TrEMBL
Match: A0A6J1D8D9 (SNW/SKI-interacting protein-like OS=Momordica charantia OX=3673 GN=LOC111018201 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 39/47 (82.98%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER 47
           MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP S   YPSER
Sbjct: 312 MRSKVQKEMLMKQKEKKELELRALAQKARSERTGAAPPSVVAYPSER 358

[Close]

BLAST of CmoCh12G013000 vs. ExPASy TrEMBL
Match: A0A6J1KD39 (SNW/SKI-interacting protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493813 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 39/47 (82.98%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER 47
           MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP  A  YPSER
Sbjct: 312 MRSKVQKEMLMKQKEKKELELRALAQKARSERTGAAPPPAVSYPSER 358

[Close]

BLAST of CmoCh12G013000 vs. ExPASy TrEMBL
Match: A0A6J1G3R1 (SNW/SKI-interacting protein-like OS=Cucurbita moschata OX=3662 GN=LOC111450468 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 39/47 (82.98%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER 47
           MRSKVQKEM MKQKE KE ELRALAQKARSE TGAAP  A  YPSER
Sbjct: 312 MRSKVQKEMLMKQKEKKELELRALAQKARSERTGAAPPPAVSYPSER 358

[Close]

BLAST of CmoCh12G013000 vs. ExPASy TrEMBL
Match: A0A2K1WY04 (SKIP_SNW domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G086100 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSER 47
           MRSKVQKEM MK+KE KE ELRALAQKARSE TGAAP  +AP PSER
Sbjct: 392 MRSKVQKEMMMKEKERKEQELRALAQKARSERTGAAPPPSAPVPSER 438

[Close]

BLAST of CmoCh12G013000 vs. TAIR 10
Match: AT1G77180.1 (chromatin protein family )

HSP 1 Score: 48.5 bits (114), Expect = 3.7e-06
Identity = 37/56 (66.07%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR 56
           MRSKVQKEM MK KE KE ELRALAQKARSE TGA  A + P  S+R R   V  R
Sbjct: 315 MRSKVQKEMVMKDKERKEQELRALAQKARSERTGA--AMSMPVSSDRGRSESVDPR 368

[Close]

BLAST of CmoCh12G013000 vs. TAIR 10
Match: AT1G77180.2 (chromatin protein family )

HSP 1 Score: 48.5 bits (114), Expect = 3.7e-06
Identity = 37/56 (66.07%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR 56
           MRSKVQKEM MK KE KE ELRALAQKARSE TGA  A + P  S+R R   V  R
Sbjct: 315 MRSKVQKEMVMKDKERKEQELRALAQKARSERTGA--AMSMPVSSDRGRSESVDPR 368

[Close]

BLAST of CmoCh12G013000 vs. TAIR 10
Match: AT1G77180.3 (chromatin protein family )

HSP 1 Score: 48.5 bits (114), Expect = 3.7e-06
Identity = 37/56 (66.07%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MRSKVQKEMFMKQKE-KESELRALAQKARSESTGAAPASAAPYPSERKRERVVAHR 56
           MRSKVQKEM MK KE KE ELRALAQKARSE TGA  A + P  S+R R   V  R
Sbjct: 315 MRSKVQKEMVMKDKERKEQELRALAQKARSERTGA--AMSMPVSSDRGRSESVDPR 368

The following BLAST results are available for this feature:

BLAST of CmoCh12G013000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80653	5.2e-05	66.07	SNW/SKI-interacting protein OS=Arabidopsis thaliana OX=3702 GN=SKIP PE=1 SV=1	[more]

BLAST of CmoCh12G013000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKF4	5.3e-08	84.00	SNW/SKI-interacting protein-like OS=Momordica charantia OX=3673 GN=LOC111021906 ...	[more]
A0A6J1D8D9	2.2e-06	82.98	SNW/SKI-interacting protein-like OS=Momordica charantia OX=3673 GN=LOC111018201 ...	[more]
A0A6J1KD39	2.9e-06	82.98	SNW/SKI-interacting protein-like OS=Cucurbita maxima OX=3661 GN=LOC111493813 PE=...	[more]
A0A6J1G3R1	2.9e-06	82.98	SNW/SKI-interacting protein-like OS=Cucurbita moschata OX=3662 GN=LOC111450468 P...	[more]
A0A2K1WY04	2.9e-06	80.85	SKIP_SNW domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_018G0...	[more]

BLAST of CmoCh12G013000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77180.1	3.7e-06	66.07	chromatin protein family	[more]
AT1G77180.2	3.7e-06	66.07	chromatin protein family	[more]
AT1G77180.3	3.7e-06	66.07	chromatin protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G013000.1	CmoCh12G013000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex